Wall clock time and date at job start Tue Mar 31 2020 15:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42103 * 110.54387 * 2 1 4 4 O 1.42103 * 110.54033 * 223.25009 * 2 1 3 5 5 C 1.76200 * 104.45242 * 111.62670 * 2 1 3 6 6 C 1.38283 * 119.93805 * 115.01786 * 5 2 1 7 7 C 1.38088 * 120.08550 * 179.97438 * 6 5 2 8 8 C 1.38904 * 119.95790 * 359.97438 * 7 6 5 9 9 N 1.39923 * 120.06693 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00458 * 33.29225 * 9 8 7 11 11 O 1.21286 * 119.99682 * 5.27902 * 10 9 8 12 12 C 1.50696 * 120.00623 * 185.27898 * 10 9 8 13 13 C 1.52998 * 109.47289 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46958 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99689 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47204 * 90.00213 * 18 16 14 20 20 H 1.48505 * 109.46834 * 210.00176 * 18 16 14 21 21 H 1.48500 * 109.47133 * 329.99907 * 18 16 14 22 22 C 1.38837 * 119.86980 * 359.74933 * 8 7 6 23 23 C 1.38248 * 119.91093 * 0.50533 * 22 8 7 24 24 Cl 1.73603 * 119.97175 * 179.76837 * 23 22 8 25 25 H 1.09008 * 109.46669 * 308.37198 * 1 2 3 26 26 H 1.08991 * 109.47320 * 68.36949 * 1 2 3 27 27 H 1.09000 * 109.47008 * 188.37833 * 1 2 3 28 28 H 1.07999 * 119.95511 * 0.02562 * 6 5 2 29 29 H 1.07999 * 120.02361 * 180.02562 * 7 6 5 30 30 H 0.97006 * 119.99585 * 213.29935 * 9 8 7 31 31 H 1.09004 * 109.46778 * 300.00423 * 12 10 9 32 32 H 1.09000 * 109.47156 * 59.99442 * 12 10 9 33 33 H 1.08998 * 109.46797 * 299.99274 * 13 12 10 34 34 H 1.08994 * 109.47719 * 59.99695 * 13 12 10 35 35 H 0.96995 * 119.99644 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.04422 * 180.27617 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2538 -0.6288 1.5861 6 6 2.9168 -1.8380 1.6896 7 6 3.2633 -2.3334 2.9311 8 6 2.9460 -1.6160 4.0774 9 7 3.2966 -2.1156 5.3365 10 6 4.4266 -2.8349 5.4855 11 8 5.1880 -2.9685 4.5509 12 6 4.7441 -3.4732 6.8132 13 6 6.0730 -4.2249 6.7129 14 6 6.3901 -4.8637 8.0405 15 1 5.7119 -4.7450 8.8726 16 6 7.5461 -5.5996 8.1927 17 7 7.8226 -6.1575 9.3512 18 14 8.7187 -5.8054 6.7533 19 1 9.7141 -4.7034 6.7642 20 1 9.4214 -7.1084 6.8698 21 1 7.9527 -5.7681 5.4816 22 6 2.2855 -0.3995 3.9712 23 6 1.9364 0.0889 2.7258 24 17 1.1051 1.6070 2.5915 25 1 -0.3633 0.6380 0.8058 26 1 -0.3633 0.3788 -0.9552 27 1 -0.3633 -1.0167 0.1497 28 1 3.1645 -2.3951 0.7982 29 1 3.7814 -3.2776 3.0107 30 1 2.7262 -1.9444 6.1023 31 1 4.8208 -2.7008 7.5785 32 1 3.9506 -4.1713 7.0798 33 1 5.9966 -4.9972 5.9476 34 1 6.8663 -3.5265 6.4465 35 1 8.6356 -6.6755 9.4582 36 1 2.0414 0.1627 4.8603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347454267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:07 Heat of formation + Delta-G solvation = -82.256422 kcal Electronic energy + Delta-G solvation = -22956.893379 eV Core-core repulsion = 19173.689871 eV Total energy + Delta-G solvation = -3783.203507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78446 -38.91951 -37.50362 -36.99068 -36.22776 -35.00854 -33.69784 -31.63358 -31.30777 -30.36579 -29.75576 -26.45710 -23.73917 -23.44351 -21.41052 -20.05906 -19.49089 -18.45494 -17.72558 -17.47055 -16.71003 -16.46174 -16.13200 -15.66080 -15.31207 -14.91990 -14.51572 -14.30889 -14.19617 -13.98830 -13.68377 -13.60126 -13.37201 -12.95447 -12.68147 -12.36882 -12.30749 -12.19199 -11.95303 -11.77048 -11.58188 -11.34000 -11.10139 -11.07206 -10.79019 -10.36173 -10.22387 -9.92289 -9.62495 -9.32107 -9.28985 -8.74272 -8.60641 -6.12790 -4.13044 -0.31043 0.31921 0.76175 1.37985 2.44405 2.55047 2.86859 3.11237 3.30934 3.38344 3.46733 3.49280 3.81700 4.23710 4.35932 4.41608 4.54898 4.71031 4.79941 4.89614 5.16891 5.21173 5.22316 5.24884 5.30143 5.64393 5.75287 5.83059 5.88036 6.01691 6.44226 6.47908 7.16923 7.19252 7.24908 7.65053 8.08671 8.40058 8.88736 9.49329 10.99774 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.002511 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.345296 B =11146.574565 C =11843.421032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.499 3.501 3 O -0.923 6.923 4 O -0.937 6.937 5 C -0.682 4.682 6 C 0.012 3.988 7 C -0.141 4.141 8 C 0.228 3.772 9 N -0.684 5.684 10 C 0.511 3.489 11 O -0.508 6.508 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.529 4.529 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.261 1.261 22 C -0.163 4.163 23 C 0.068 3.932 24 Cl -0.048 7.048 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.417 0.583 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.381 13.689 -15.682 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.677 3.323 3 O -0.921 6.921 4 O -0.934 6.934 5 C -0.769 4.769 6 C -0.007 4.007 7 C -0.163 4.163 8 C 0.131 3.869 9 N -0.330 5.330 10 C 0.301 3.699 11 O -0.381 6.381 12 C -0.160 4.160 13 C -0.037 4.037 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.185 4.185 23 C 0.040 3.960 24 Cl -0.018 7.018 25 H 0.150 0.850 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.175 0.825 29 H 0.171 0.829 30 H 0.254 0.746 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.136 13.788 -16.803 28.960 hybrid contribution -0.153 -0.149 0.674 0.707 sum -19.290 13.639 -16.130 28.606 Atomic orbital electron populations 1.30297 1.25533 1.12322 1.12132 1.05275 0.78074 0.74952 0.74013 1.93634 1.76995 1.35776 1.85650 1.93579 1.77543 1.61786 1.60491 1.30288 1.18888 1.07996 1.19752 1.20873 0.89713 0.91259 0.98881 1.21511 1.02009 1.01897 0.90853 1.17976 0.91808 0.90561 0.86594 1.44169 1.25883 1.54160 1.08739 1.22029 0.78644 0.76493 0.92712 1.90708 1.47184 1.57641 1.42526 1.21758 1.02938 1.00451 0.90833 1.19406 0.90654 0.95462 0.98205 1.21040 1.07426 1.32145 0.96088 0.90840 1.24970 0.97678 0.94827 0.95666 1.69903 1.26025 1.34266 1.23683 0.86796 0.81372 0.77577 0.83784 1.20170 1.21324 1.18577 1.20809 1.05159 0.95430 0.97091 1.20072 0.95165 0.87080 0.93723 1.98425 1.75861 1.29587 1.97960 0.85013 0.84731 0.84723 0.82460 0.82886 0.74638 0.88911 0.88737 0.95643 0.96086 0.92569 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.97 10.61 101.05 1.07 -1.89 16 2 S 2.50 22.54 5.23 -107.50 -0.56 21.98 16 3 O -0.92 -11.07 16.45 -57.54 -0.95 -12.02 16 4 O -0.94 -10.84 16.73 -57.54 -0.96 -11.80 16 5 C -0.68 -7.01 5.58 -39.51 -0.22 -7.23 16 6 C 0.01 0.14 9.49 -39.62 -0.38 -0.24 16 7 C -0.14 -1.78 8.66 -39.39 -0.34 -2.12 16 8 C 0.23 2.66 6.28 -83.70 -0.53 2.14 16 9 N -0.68 -7.72 5.34 -9.87 -0.05 -7.77 16 10 C 0.51 8.00 7.57 -10.99 -0.08 7.92 16 11 O -0.51 -9.87 13.67 5.55 0.08 -9.80 16 12 C -0.12 -2.02 5.64 -27.89 -0.16 -2.18 16 13 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 14 C -0.53 -14.38 9.66 -34.44 -0.33 -14.72 16 15 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 18 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 22 C -0.16 -1.60 9.75 -39.36 -0.38 -1.99 16 23 C 0.07 0.68 6.28 -39.53 -0.25 0.43 16 24 Cl -0.05 -0.42 24.81 -51.86 -1.29 -1.71 16 25 H 0.13 0.54 6.30 -51.92 -0.33 0.21 16 26 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.16 1.53 7.20 -52.49 -0.38 1.15 16 29 H 0.15 2.12 6.41 -52.49 -0.34 1.78 16 30 H 0.42 3.13 8.82 -40.82 -0.36 2.77 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.03 0.61 7.15 -51.93 -0.37 0.24 16 34 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -36.52 333.07 -8.26 -44.78 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.86 Total: -1.47 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.79 Total: -18.03 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.72 Total: -34.11 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.83 Total: -33.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 22.54 SS G_CDS: -0.56 Total: 21.98 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.29 Total: -1.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.52 -8.26 -44.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347454267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.472 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds