Wall clock time and date at job start Tue Mar 31 2020 15:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42103 * 110.54387 * 2 1 4 4 O 1.42103 * 110.54033 * 223.25009 * 2 1 3 5 5 C 1.76200 * 104.45242 * 111.62670 * 2 1 3 6 6 C 1.38283 * 119.93805 * 115.01786 * 5 2 1 7 7 C 1.38088 * 120.08550 * 179.97438 * 6 5 2 8 8 C 1.38904 * 119.95790 * 359.97438 * 7 6 5 9 9 N 1.39923 * 120.06693 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00458 * 33.29225 * 9 8 7 11 11 O 1.21286 * 119.99682 * 5.27902 * 10 9 8 12 12 C 1.50696 * 120.00623 * 185.27898 * 10 9 8 13 13 C 1.52998 * 109.47289 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46958 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99689 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47204 * 90.00213 * 18 16 14 20 20 H 1.48505 * 109.46834 * 210.00176 * 18 16 14 21 21 H 1.48500 * 109.47133 * 329.99907 * 18 16 14 22 22 C 1.38837 * 119.86980 * 359.74933 * 8 7 6 23 23 C 1.38248 * 119.91093 * 0.50533 * 22 8 7 24 24 Cl 1.73603 * 119.97175 * 179.76837 * 23 22 8 25 25 H 1.09008 * 109.46669 * 308.37198 * 1 2 3 26 26 H 1.08991 * 109.47320 * 68.36949 * 1 2 3 27 27 H 1.09000 * 109.47008 * 188.37833 * 1 2 3 28 28 H 1.07999 * 119.95511 * 0.02562 * 6 5 2 29 29 H 1.07999 * 120.02361 * 180.02562 * 7 6 5 30 30 H 0.97006 * 119.99585 * 213.29935 * 9 8 7 31 31 H 1.09004 * 109.46778 * 300.00423 * 12 10 9 32 32 H 1.09000 * 109.47156 * 59.99442 * 12 10 9 33 33 H 1.08998 * 109.46797 * 299.99274 * 13 12 10 34 34 H 1.08994 * 109.47719 * 59.99695 * 13 12 10 35 35 H 0.96995 * 119.99644 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.04422 * 180.27617 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2538 -0.6288 1.5861 6 6 2.9168 -1.8380 1.6896 7 6 3.2633 -2.3334 2.9311 8 6 2.9460 -1.6160 4.0774 9 7 3.2966 -2.1156 5.3365 10 6 4.4266 -2.8349 5.4855 11 8 5.1880 -2.9685 4.5509 12 6 4.7441 -3.4732 6.8132 13 6 6.0730 -4.2249 6.7129 14 6 6.3901 -4.8637 8.0405 15 1 5.7119 -4.7450 8.8726 16 6 7.5461 -5.5996 8.1927 17 7 7.8226 -6.1575 9.3512 18 14 8.7187 -5.8054 6.7533 19 1 9.7141 -4.7034 6.7642 20 1 9.4214 -7.1084 6.8698 21 1 7.9527 -5.7681 5.4816 22 6 2.2855 -0.3995 3.9712 23 6 1.9364 0.0889 2.7258 24 17 1.1051 1.6070 2.5915 25 1 -0.3633 0.6380 0.8058 26 1 -0.3633 0.3788 -0.9552 27 1 -0.3633 -1.0167 0.1497 28 1 3.1645 -2.3951 0.7982 29 1 3.7814 -3.2776 3.0107 30 1 2.7262 -1.9444 6.1023 31 1 4.8208 -2.7008 7.5785 32 1 3.9506 -4.1713 7.0798 33 1 5.9966 -4.9972 5.9476 34 1 6.8663 -3.5265 6.4465 35 1 8.6356 -6.6755 9.4582 36 1 2.0414 0.1627 4.8603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347454267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:07 Heat of formation + Delta-G solvation = -109.751880 kcal Electronic energy + Delta-G solvation = -22958.085671 eV Core-core repulsion = 19173.689871 eV Total energy + Delta-G solvation = -3784.395800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82468 -39.93409 -38.28978 -37.77778 -37.01978 -36.06044 -35.58917 -33.44222 -32.13829 -31.32318 -30.29573 -28.13768 -24.86622 -24.33311 -22.91818 -21.37765 -20.24051 -19.40130 -19.18595 -18.48905 -17.99889 -17.26662 -17.16866 -16.73691 -16.30301 -16.16656 -15.88028 -15.36076 -15.14041 -15.04983 -14.68923 -14.63827 -14.37031 -14.08462 -13.92935 -13.45809 -13.19795 -13.16256 -13.03542 -12.94155 -12.70951 -12.54292 -12.16794 -12.03529 -12.00125 -11.83844 -11.77620 -11.71364 -11.41836 -10.96808 -10.79113 -10.11418 -9.67054 -8.32515 -6.35443 -0.96068 -0.54194 -0.07080 0.60736 1.32583 1.35675 1.36483 1.48483 1.73581 1.90597 2.22668 2.33406 2.83214 3.03790 3.15186 3.50733 3.70987 3.83910 3.98880 4.06225 4.16517 4.25017 4.33080 4.44350 4.45678 4.49491 4.78008 4.90559 4.92584 4.96380 5.10252 5.32862 5.41246 5.55776 5.59657 6.18716 6.26160 6.71517 6.97629 7.30205 8.82958 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.002511 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.345296 B =11146.574565 C =11843.421032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.494 3.506 3 O -0.959 6.959 4 O -0.970 6.970 5 C -0.680 4.680 6 C 0.004 3.996 7 C -0.158 4.158 8 C 0.212 3.788 9 N -0.662 5.662 10 C 0.519 3.481 11 O -0.552 6.552 12 C -0.113 4.113 13 C 0.002 3.998 14 C -0.528 4.528 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.151 4.151 23 C 0.061 3.939 24 Cl -0.032 7.032 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.160 0.840 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.436 0.564 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.777 15.230 -16.625 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.676 3.324 3 O -0.956 6.956 4 O -0.967 6.967 5 C -0.766 4.766 6 C -0.015 4.015 7 C -0.180 4.180 8 C 0.115 3.885 9 N -0.309 5.309 10 C 0.310 3.690 11 O -0.429 6.429 12 C -0.152 4.152 13 C -0.036 4.036 14 C -0.566 4.566 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.584 5.584 18 Si 0.761 3.239 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.173 4.173 23 C 0.033 3.967 24 Cl -0.003 7.003 25 H 0.161 0.839 26 H 0.181 0.819 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.152 0.848 30 H 0.277 0.723 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.540 15.354 -17.725 31.842 hybrid contribution 0.411 -0.546 0.942 1.164 sum -21.129 14.808 -16.783 30.780 Atomic orbital electron populations 1.30110 1.18982 1.14620 1.14306 1.05317 0.80519 0.73602 0.73011 1.93590 1.79430 1.36876 1.85749 1.93538 1.79820 1.62262 1.61124 1.30496 1.18073 1.07316 1.20707 1.20942 0.90026 0.91938 0.98610 1.21478 1.02667 1.01773 0.92050 1.18027 0.92980 0.91470 0.86057 1.43711 1.24738 1.52814 1.09619 1.21604 0.79355 0.76601 0.91473 1.90705 1.49025 1.59565 1.43557 1.21547 1.00262 1.01071 0.92358 1.19264 0.93790 0.95285 0.95301 1.21411 1.06574 1.31329 0.97244 0.92814 1.25784 0.99663 0.95050 0.97897 1.70018 1.26960 1.35763 1.25626 0.85871 0.79463 0.77788 0.80823 1.19647 1.20648 1.18307 1.21042 1.03562 0.94503 0.98163 1.20199 0.95233 0.87598 0.93690 1.98432 1.75419 1.28521 1.97939 0.83922 0.81869 0.82154 0.82017 0.84807 0.72275 0.86925 0.86753 0.96832 0.97201 0.92416 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.29 10.61 113.37 1.20 -2.08 16 2 S 2.49 41.52 5.23 -56.49 -0.30 41.22 16 3 O -0.96 -22.11 16.45 -127.65 -2.10 -24.21 16 4 O -0.97 -22.03 16.73 -127.65 -2.14 -24.17 16 5 C -0.68 -13.12 5.58 22.31 0.12 -13.00 16 6 C 0.00 0.09 9.49 22.24 0.21 0.31 16 7 C -0.16 -3.98 8.66 22.39 0.19 -3.78 16 8 C 0.21 4.63 6.28 38.15 0.24 4.87 16 9 N -0.66 -13.68 5.34 -303.51 -1.62 -15.30 16 10 C 0.52 15.75 7.57 87.66 0.66 16.41 16 11 O -0.55 -21.57 13.67 -3.05 -0.04 -21.62 16 12 C -0.11 -3.66 5.64 29.85 0.17 -3.49 16 13 C 0.00 0.07 3.33 29.85 0.10 0.17 16 14 C -0.53 -28.90 9.66 25.60 0.25 -28.65 16 15 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 16 C 0.01 0.80 5.47 84.65 0.46 1.26 16 17 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 18 Si 0.94 45.46 27.47 68.60 1.88 47.35 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 22 C -0.15 -2.59 9.75 22.42 0.22 -2.37 16 23 C 0.06 1.10 6.28 22.31 0.14 1.24 16 24 Cl -0.03 -0.49 24.81 -2.72 -0.07 -0.55 16 25 H 0.14 0.57 6.30 -2.39 -0.02 0.56 16 26 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.16 3.26 7.20 -2.91 -0.02 3.24 16 29 H 0.13 3.87 6.41 -2.91 -0.02 3.85 16 30 H 0.44 5.27 8.82 -92.70 -0.82 4.45 16 31 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.01 0.64 7.15 -2.39 -0.02 0.63 16 34 H 0.01 0.46 7.53 -2.39 -0.02 0.45 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.05 333.07 0.16 -80.90 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.26 Total: 2.88 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.97 Total: -29.12 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.32 Total: -72.68 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -4.28 Total: -70.00 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -0.30 Total: 41.22 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.07 Total: -0.55 kcal Total: -81.05 0.16 -80.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347454267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.855 kcal (2) G-P(sol) polarization free energy of solvation -81.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds