Wall clock time and date at job start Tue Mar 31 2020 16:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39963 * 120.47026 * 55.52086 * 3 2 1 5 5 C 1.38351 * 118.36856 * 179.72655 * 4 3 2 6 6 C 1.39374 * 119.23754 * 0.49276 * 5 4 3 7 7 C 1.48181 * 119.55295 * 179.77140 * 6 5 4 8 8 O 1.21528 * 119.99719 * 359.72805 * 7 6 5 9 9 N 1.34778 * 119.99998 * 179.72618 * 7 6 5 10 10 C 1.40048 * 119.99661 * 180.02562 * 9 7 6 11 11 C 1.40431 * 125.97710 * 359.97438 * 10 9 7 12 12 C 1.35227 * 107.86358 * 179.77684 * 11 10 9 13 13 N 1.34972 * 107.87044 * 0.42171 * 12 11 10 14 14 C 1.46500 * 125.97758 * 179.83774 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71469 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31242 * 125.97404 * 180.02562 * 10 9 7 24 24 N 1.32779 * 120.89644 * 359.49389 * 6 5 4 25 25 C 1.31484 * 121.77554 * 0.25610 * 24 6 5 26 26 Cl 1.73604 * 119.66543 * 179.97438 * 25 24 6 27 27 H 1.07997 * 120.81728 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.38006 * 180.26453 * 5 4 3 29 29 H 0.96995 * 120.00062 * 0.02562 * 9 7 6 30 30 H 1.07998 * 126.06594 * 0.03611 * 11 10 9 31 31 H 1.08003 * 126.07092 * 180.28647 * 12 11 10 32 32 H 1.09004 * 109.47078 * 4.72231 * 14 13 12 33 33 H 1.08993 * 109.47364 * 244.72002 * 14 13 12 34 34 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2780 -0.6820 -0.9944 5 6 4.6606 -0.6478 -0.9559 6 6 5.2960 0.0506 0.0693 7 6 6.7765 0.0875 0.1202 8 8 7.4282 -0.4930 -0.7256 9 7 7.4003 0.7648 1.1044 10 6 8.7995 0.8000 1.1521 11 6 9.6719 0.1775 0.2447 12 6 10.9381 0.4519 0.6317 13 7 10.8753 1.2106 1.7463 14 6 12.0195 1.7295 2.4998 15 6 11.9016 3.2268 2.6244 16 1 11.0585 3.7403 2.1865 17 6 12.8700 3.9410 3.2974 18 7 13.8940 3.3150 3.8352 19 14 12.7236 5.7968 3.4524 20 1 13.8803 6.3222 4.2213 21 1 12.7107 6.4071 2.0986 22 1 11.4632 6.1363 4.1605 23 7 9.5248 1.4199 2.0533 24 7 4.5928 0.6880 0.9978 25 6 3.2779 0.6845 0.9945 26 17 2.4133 1.5360 2.2360 27 1 2.7595 -1.2180 -1.7754 28 1 5.2408 -1.1596 -1.7094 29 1 6.8801 1.2278 1.7796 30 1 9.3827 -0.4121 -0.6128 31 1 11.8399 0.1209 0.1381 32 1 12.9425 1.4802 1.9763 33 1 12.0332 1.2822 3.4936 34 1 13.9700 2.3513 3.7550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360628072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:32 Heat of formation + Delta-G solvation = 94.272106 kcal Electronic energy + Delta-G solvation = -23368.593296 eV Core-core repulsion = 19522.186191 eV Total energy + Delta-G solvation = -3846.407105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48175 -41.86459 -40.32133 -38.00871 -37.86826 -36.52690 -35.61994 -34.24246 -33.00576 -32.45607 -31.03403 -28.47100 -27.10284 -25.11590 -25.01628 -23.37413 -22.24202 -21.22937 -20.59975 -19.35301 -19.15887 -18.64484 -17.99874 -16.98338 -16.82251 -16.70303 -16.15833 -15.84940 -15.72076 -15.54724 -15.14137 -14.99734 -14.66629 -14.51582 -14.26255 -14.14205 -13.91290 -13.72850 -13.58874 -13.22116 -13.00543 -12.61989 -12.60883 -12.07991 -11.95194 -11.80395 -11.51255 -11.31592 -11.00901 -10.99426 -10.68389 -10.40439 -9.85072 -9.23092 -8.76636 -6.54465 -1.24593 -0.28078 0.35983 0.76596 1.15628 1.23963 1.34084 1.52018 1.58173 1.73851 1.79574 2.06912 2.14890 2.34600 2.49395 2.51185 2.79727 3.02311 3.28604 3.48154 3.72804 3.86213 3.90740 4.15669 4.46658 4.57044 4.63434 4.70311 4.79715 4.82843 5.01357 5.02526 5.56033 5.78247 5.89604 5.93494 6.12888 6.20378 6.28143 6.42773 6.76352 6.95223 7.20704 8.59910 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002411 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.030508 B =11610.884151 C =12893.774258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.271 3.729 3 C -0.034 4.034 4 C 0.014 3.986 5 C -0.085 4.085 6 C 0.119 3.881 7 C 0.580 3.420 8 O -0.513 6.513 9 N -0.610 5.610 10 C 0.264 3.736 11 C -0.284 4.284 12 C 0.057 3.943 13 N -0.342 5.342 14 C 0.259 3.741 15 C -0.621 4.621 16 H 0.045 0.955 17 C -0.019 4.019 18 N -0.923 5.923 19 Si 1.118 2.882 20 H -0.275 1.275 21 H -0.270 1.270 22 H -0.277 1.277 23 N -0.345 5.345 24 N -0.469 5.469 25 C 0.209 3.791 26 Cl -0.012 7.012 27 H 0.214 0.786 28 H 0.195 0.805 29 H 0.427 0.573 30 H 0.180 0.820 31 H 0.205 0.795 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.107 -10.348 -12.269 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.045 4.045 3 C -0.041 4.041 4 C -0.013 4.013 5 C -0.105 4.105 6 C -0.019 4.019 7 C 0.365 3.635 8 O -0.387 6.387 9 N -0.258 5.258 10 C 0.009 3.991 11 C -0.315 4.315 12 C -0.091 4.091 13 N -0.124 5.124 14 C 0.139 3.861 15 C -0.659 4.659 16 H 0.063 0.937 17 C -0.219 4.219 18 N -0.559 5.559 19 Si 0.939 3.061 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.202 1.202 23 N -0.176 5.176 24 N -0.182 5.182 25 C 0.038 3.962 26 Cl 0.017 6.983 27 H 0.231 0.769 28 H 0.212 0.788 29 H 0.265 0.735 30 H 0.197 0.803 31 H 0.222 0.778 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.168 -8.166 -10.375 25.802 hybrid contribution -0.723 -1.733 -0.762 2.027 sum -22.891 -9.899 -11.137 27.313 Atomic orbital electron populations 1.81336 1.12387 1.07711 1.07351 1.24984 0.91796 0.93878 0.93877 1.16768 0.85527 1.03335 0.98441 1.22240 0.92505 0.91570 0.94971 1.22457 0.94957 0.95796 0.97319 1.20832 0.91715 0.96337 0.92975 1.18044 0.86629 0.78317 0.80473 1.90745 1.65441 1.43931 1.38554 1.42369 1.01884 1.51447 1.30077 1.19392 0.85093 0.98649 0.95955 1.21782 0.89764 1.13457 1.06506 1.23256 1.01222 0.95241 0.89425 1.48603 1.03880 1.38342 1.21525 1.19436 0.80782 0.94952 0.90887 1.22279 1.11219 0.92049 1.40325 0.93703 1.27232 0.91585 1.11208 0.91847 1.70948 1.30667 1.11054 1.43242 0.82897 0.76590 0.69041 0.77558 1.20030 1.19551 1.20245 1.77317 0.88639 1.26693 1.24931 1.66824 1.07019 1.18674 1.25712 1.21666 0.88820 0.94605 0.91079 1.98480 1.72659 1.75291 1.51883 0.76928 0.78768 0.73459 0.80312 0.77821 0.92539 0.96561 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.25 18.54 19.00 0.35 -6.90 16 2 C 0.27 3.45 14.41 88.33 1.27 4.72 16 3 C -0.03 -0.33 5.75 -21.18 -0.12 -0.45 16 4 C 0.01 0.05 9.89 22.71 0.22 0.27 16 5 C -0.08 -0.64 9.61 22.57 0.22 -0.42 16 6 C 0.12 1.95 6.75 41.92 0.28 2.23 16 7 C 0.58 13.99 7.78 86.89 0.68 14.66 16 8 O -0.51 -13.69 13.43 -3.80 -0.05 -13.74 16 9 N -0.61 -18.12 5.43 -309.85 -1.68 -19.80 16 10 C 0.26 10.06 8.10 133.36 1.08 11.15 16 11 C -0.28 -10.10 9.60 22.11 0.21 -9.89 16 12 C 0.06 2.08 11.43 83.52 0.95 3.04 16 13 N -0.34 -15.60 3.67 -351.84 -1.29 -16.89 16 14 C 0.26 13.07 5.57 85.64 0.48 13.55 16 15 C -0.62 -35.00 9.24 25.60 0.24 -34.76 16 16 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 17 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 18 N -0.92 -53.58 13.65 21.45 0.29 -53.28 16 19 Si 1.12 49.58 29.90 68.60 2.05 51.63 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.35 -15.87 12.42 -54.49 -0.68 -16.55 16 24 N -0.47 -8.41 9.49 -174.83 -1.66 -10.07 16 25 C 0.21 3.15 7.31 85.18 0.62 3.77 16 26 Cl -0.01 -0.20 28.18 -2.72 -0.08 -0.28 16 27 H 0.21 -1.15 8.06 -2.91 -0.02 -1.17 16 28 H 0.20 0.73 7.62 -2.91 -0.02 0.71 16 29 H 0.43 11.82 8.14 -92.71 -0.75 11.06 16 30 H 0.18 5.71 5.91 -2.91 -0.02 5.69 16 31 H 0.21 5.72 8.06 -2.91 -0.02 5.70 16 32 H 0.06 2.71 7.94 -2.39 -0.02 2.69 16 33 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 34 H 0.26 14.95 7.22 -92.71 -0.67 14.28 16 Total: -1.00 -73.43 335.72 4.40 -69.03 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.55 Total: 9.60 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.60 Total: 7.26 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.67 Total: -123.50 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.05 Total: -13.74 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -73.43 4.40 -69.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360628072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.300 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds