Wall clock time and date at job start Tue Mar 31 2020 17:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00089 * 2 1 4 4 C 1.37825 * 119.99895 * 179.97438 * 2 1 3 5 5 N 1.30217 * 124.72918 * 0.02903 * 4 2 1 6 6 C 1.30954 * 117.26961 * 179.70523 * 5 4 2 7 7 Cl 1.73595 * 123.01791 * 180.30273 * 6 5 4 8 8 C 1.36910 * 113.96972 * 0.48078 * 6 5 4 9 9 C 1.41785 * 126.12065 * 179.82432 * 8 6 5 10 10 O 1.21771 * 119.99462 * 359.71228 * 9 8 6 11 11 N 1.34777 * 120.00164 * 179.71599 * 9 8 6 12 12 C 1.47061 * 136.05655 * 359.62278 * 11 9 8 13 13 C 1.53756 * 87.88610 * 152.97095 * 12 11 9 14 14 O 1.42901 * 114.39215 * 272.67498 * 13 12 11 15 15 C 1.50701 * 114.26919 * 139.79264 * 13 12 11 16 16 H 1.07993 * 120.00091 * 266.47094 * 15 13 12 17 17 C 1.37882 * 119.99795 * 86.47584 * 15 13 12 18 18 N 1.31513 * 120.00049 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99552 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47259 * 90.00235 * 19 17 15 21 21 H 1.48508 * 109.46758 * 209.99837 * 19 17 15 22 22 H 1.48500 * 109.47536 * 329.99625 * 19 17 15 23 23 C 1.47067 * 136.05621 * 180.02562 * 11 9 8 24 24 S 1.70913 * 124.72023 * 179.97438 * 4 2 1 25 25 H 1.09007 * 109.46937 * 270.00154 * 1 2 3 26 26 H 1.08995 * 109.46755 * 30.00340 * 1 2 3 27 27 H 1.09002 * 109.46877 * 150.00126 * 1 2 3 28 28 H 1.09000 * 109.46690 * 270.00096 * 3 2 1 29 29 H 1.08997 * 109.46941 * 29.99926 * 3 2 1 30 30 H 1.09001 * 109.47223 * 150.00211 * 3 2 1 31 31 H 1.09006 * 113.47010 * 267.69566 * 12 11 9 32 32 H 1.08998 * 113.46825 * 38.13956 * 12 11 9 33 33 H 0.96700 * 114.00394 * 273.58447 * 14 13 12 34 34 H 0.96996 * 119.99862 * 179.97438 * 18 17 15 35 35 H 1.09001 * 113.46726 * 321.86204 * 23 11 9 36 36 H 1.09001 * 113.46737 * 92.24085 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1541 -1.1936 0.0005 5 7 1.5982 -2.3712 0.0005 6 6 2.3946 -3.4107 -0.0049 7 17 1.8145 -5.0468 -0.0134 8 6 3.7260 -3.0914 0.0006 9 6 4.8058 -4.0101 0.0002 10 8 4.5861 -5.2079 -0.0001 11 7 6.0755 -3.5579 0.0003 12 6 6.7305 -2.2412 -0.0060 13 6 7.9291 -2.8975 0.6987 14 8 7.8289 -2.9330 2.1238 15 6 9.2724 -2.4226 0.2077 16 1 9.7853 -2.9660 -0.5720 17 6 9.8466 -1.2944 0.7541 18 7 9.2218 -0.6324 1.7033 19 14 11.5113 -0.7053 0.1449 20 1 11.3191 0.2413 -0.9831 21 1 12.2284 -0.0195 1.2499 22 1 12.3100 -1.8692 -0.3162 23 6 7.4154 -4.1640 -0.0004 24 16 3.8574 -1.3343 0.0000 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3792 1.5833 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 6.9620 -1.8763 -1.0067 32 1 6.2185 -1.4987 0.6061 33 1 8.1534 -2.1338 2.5610 34 1 9.6259 0.1610 2.0879 35 1 7.4870 -5.0598 0.6164 36 1 7.8268 -4.3064 -0.9997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362366404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:08 Heat of formation + Delta-G solvation = 18.703351 kcal Electronic energy + Delta-G solvation = -23886.099748 eV Core-core repulsion = 20139.566936 eV Total energy + Delta-G solvation = -3746.532812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05239 -39.44143 -37.58013 -36.76537 -36.09085 -34.02533 -32.22279 -30.52589 -28.75970 -28.47646 -26.85691 -25.28518 -25.18857 -23.20630 -21.37422 -19.69746 -19.06259 -18.03708 -17.37374 -16.57575 -16.25096 -16.02072 -15.43525 -15.18863 -15.01852 -14.87881 -14.21616 -14.05672 -13.86883 -13.11292 -12.99480 -12.97713 -12.69427 -12.47010 -12.38051 -11.98280 -11.85698 -11.65639 -11.58667 -11.09869 -11.00002 -10.77105 -10.52355 -10.31328 -9.91510 -9.86649 -9.62963 -9.22654 -9.15739 -8.80974 -8.41734 -7.95626 -7.59755 -6.43847 -4.54150 0.48276 0.99302 1.36480 2.13552 2.54014 2.80390 3.11782 3.20470 3.24035 3.59051 3.74715 4.15538 4.49690 4.79056 4.83959 4.93134 4.94324 5.17148 5.26325 5.27896 5.41741 5.56364 5.58116 5.88353 6.19056 6.29566 6.37944 6.43793 6.61590 6.63447 6.65464 7.07459 7.57823 7.59610 7.77112 8.46348 8.50902 8.75860 9.17349 9.46602 10.62790 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.004144 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.239573 B = 6755.570050 C = 8357.475470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.578 5.578 3 C 0.086 3.914 4 C 0.307 3.693 5 N -0.554 5.554 6 C 0.236 3.764 7 Cl 0.020 6.980 8 C -0.318 4.318 9 C 0.616 3.384 10 O -0.541 6.541 11 N -0.636 5.636 12 C 0.066 3.934 13 C 0.245 3.755 14 O -0.569 6.569 15 C -0.533 4.533 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.112 3.888 24 S 0.208 5.792 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.274 0.726 35 H 0.069 0.931 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 6.991 -3.803 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.296 5.296 3 C -0.056 4.056 4 C -0.060 4.060 5 N -0.281 5.281 6 C 0.069 3.931 7 Cl 0.049 6.951 8 C -0.446 4.446 9 C 0.406 3.594 10 O -0.422 6.422 11 N -0.369 5.369 12 C -0.058 4.058 13 C 0.202 3.798 14 O -0.382 6.382 15 C -0.571 4.571 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.010 4.010 24 S 0.460 5.540 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.832 6.656 -3.784 15.810 hybrid contribution 0.411 0.141 -0.180 0.471 sum -13.421 6.797 -3.964 15.557 Atomic orbital electron populations 1.21742 0.77422 1.03405 1.02078 1.45693 1.06223 1.01013 1.76650 1.21945 0.97320 0.83559 1.02823 1.23775 0.95967 0.89251 0.97017 1.65506 1.38030 0.96045 1.28540 1.20451 0.86610 0.88592 0.97473 1.98413 1.88991 1.11704 1.95988 1.24093 0.97178 0.96445 1.26844 1.14800 0.80109 0.86822 0.77629 1.90829 1.83690 1.14873 1.52835 1.49597 1.03834 1.12447 1.71036 1.24421 0.94504 0.85501 1.01411 1.19554 0.90727 0.89146 0.80345 1.86066 1.87117 1.46803 1.18183 1.21444 1.03279 1.10868 1.21513 0.90797 1.25073 0.98205 0.95508 0.94173 1.69264 1.39005 1.19186 1.26419 0.86314 0.82662 0.78973 0.78492 1.20274 1.20875 1.19462 1.23293 0.78249 0.99372 1.00126 1.84532 0.98477 1.00560 1.70441 0.92589 0.90970 0.90053 0.91542 0.89538 0.90641 0.89766 0.91648 0.74996 0.91550 0.91250 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 10.54 59.85 0.63 1.43 16 2 N -0.58 -6.07 3.36 -192.02 -0.64 -6.71 16 3 C 0.09 0.62 10.39 59.85 0.62 1.24 16 4 C 0.31 4.38 7.71 -88.01 -0.68 3.70 16 5 N -0.55 -9.09 9.72 -11.84 -0.12 -9.21 16 6 C 0.24 4.30 7.41 -18.41 -0.14 4.16 16 7 Cl 0.02 0.36 27.26 -51.86 -1.41 -1.05 16 8 C -0.32 -6.11 6.32 -38.71 -0.24 -6.36 16 9 C 0.62 13.55 7.85 -14.90 -0.12 13.43 16 10 O -0.54 -12.92 15.77 5.13 0.08 -12.84 16 11 N -0.64 -13.85 3.69 -188.44 -0.69 -14.55 16 12 C 0.07 1.39 6.64 -8.38 -0.06 1.34 16 13 C 0.24 5.78 1.58 -91.11 -0.14 5.63 16 14 O -0.57 -14.56 13.55 -35.23 -0.48 -15.03 16 15 C -0.53 -12.97 8.70 -34.44 -0.30 -13.27 16 16 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 18 N -0.90 -21.95 11.01 55.43 0.61 -21.34 16 19 Si 0.91 18.80 29.54 -169.99 -5.02 13.77 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 C 0.11 2.45 8.02 -8.50 -0.07 2.38 16 24 S 0.21 3.22 18.31 -107.50 -1.97 1.25 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.08 0.78 7.59 -51.93 -0.39 0.39 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.60 7.01 -51.93 -0.36 0.24 16 31 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 32 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 33 H 0.39 10.10 6.33 45.56 0.29 10.38 16 34 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -29.78 334.21 -8.48 -38.26 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.29 Total: 7.07 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -0.59 Total: 15.34 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.84 Total: -51.80 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.40 Total: -27.88 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.97 Total: 1.25 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.41 Total: -1.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.78 -8.48 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362366404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.967 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds