Wall clock time and date at job start Tue Mar 31 2020 16:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35945 * 117.00258 * 2 1 4 4 N 1.30343 * 121.63766 * 359.97201 * 3 2 1 5 5 S 1.69584 * 107.17500 * 180.02562 * 4 3 2 6 6 C 1.72029 * 95.78237 * 359.97438 * 5 4 3 7 7 C 1.35066 * 105.59807 * 0.02562 * 6 5 4 8 8 S 1.76197 * 122.63692 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40258 * 228.56613 * 8 7 6 10 10 O 1.42093 * 106.40371 * 1.48458 * 8 7 6 11 11 N 1.65594 * 107.21832 * 115.02772 * 8 7 6 12 12 C 1.46507 * 120.00121 * 269.99939 * 11 8 7 13 13 C 1.50699 * 109.47062 * 94.99901 * 12 11 8 14 14 H 1.08000 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00000 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00068 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47055 * 90.00314 * 17 15 13 19 19 H 1.48499 * 109.47247 * 210.00329 * 17 15 13 20 20 H 1.48501 * 109.46878 * 330.00410 * 17 15 13 21 21 C 1.46496 * 120.00358 * 89.99864 * 11 8 7 22 22 C 1.52997 * 109.47604 * 94.99812 * 21 11 8 23 23 C 1.47193 * 109.47743 * 179.97438 * 22 21 11 24 24 N 5.39921 * 96.85220 * 164.02355 * 2 1 3 25 25 H 1.08994 * 109.47213 * 60.00543 * 1 2 3 26 26 H 1.09004 * 109.47035 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47186 * 299.99784 * 1 2 3 28 28 H 1.07998 * 127.20258 * 179.73747 * 6 5 4 29 29 H 1.08990 * 109.47255 * 214.99920 * 12 11 8 30 30 H 1.08997 * 109.46642 * 335.00236 * 12 11 8 31 31 H 0.97000 * 119.99912 * 179.97438 * 16 15 13 32 32 H 1.08995 * 109.47591 * 215.00250 * 21 11 8 33 33 H 1.09008 * 109.47218 * 335.00071 * 21 11 8 34 34 H 1.08999 * 109.47425 * 300.01067 * 22 21 11 35 35 H 1.09008 * 109.46622 * 59.99894 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3243 -0.0005 5 16 2.4908 3.5951 -0.0011 6 6 3.8881 2.5916 0.0002 7 6 3.4243 1.3231 0.0004 8 16 4.4915 -0.0789 0.0010 9 8 4.0170 -0.9448 -1.0209 10 8 5.8188 0.4271 0.0365 11 7 4.2556 -0.8739 1.4343 12 6 5.0659 -0.5292 2.6052 13 6 4.3239 0.4721 3.4525 14 1 3.3463 0.8168 3.1494 15 6 4.8929 0.9480 4.6146 16 7 4.2455 1.8222 5.3538 17 14 6.5835 0.3512 5.1393 18 1 7.6236 1.2390 4.5601 19 1 6.6798 0.3771 6.6209 20 1 6.7911 -1.0367 4.6539 21 6 3.2367 -1.9220 1.5317 22 6 3.8863 -3.2879 1.3014 23 6 2.8626 -4.3410 1.3998 24 7 2.0732 -5.1536 1.4755 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.9203 2.9094 -0.0035 29 1 5.2594 -1.4280 3.1906 30 1 6.0120 -0.0980 2.2781 31 1 4.6458 2.1568 6.1716 32 1 2.7838 -1.8975 2.5228 33 1 2.4685 -1.7531 0.7769 34 1 4.3393 -3.3124 0.3103 35 1 4.6545 -3.4567 2.0561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363767558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:38 Heat of formation + Delta-G solvation = -53.914666 kcal Electronic energy + Delta-G solvation = -24957.593634 eV Core-core repulsion = 21209.955575 eV Total energy + Delta-G solvation = -3747.638059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25617 -38.51730 -38.22449 -37.75943 -37.09876 -36.86620 -34.60528 -32.54624 -32.26751 -29.28186 -28.96960 -25.50176 -25.13131 -23.47775 -22.30464 -20.47639 -19.42284 -19.12392 -18.80466 -18.52262 -18.12575 -17.34507 -17.15139 -16.78406 -16.27749 -16.03513 -15.79493 -15.34961 -14.90915 -14.74755 -14.64169 -14.41708 -13.94598 -13.72744 -13.50833 -13.32853 -13.25457 -13.17486 -12.95702 -12.89409 -12.82807 -12.57952 -12.46498 -12.24327 -12.17333 -11.98832 -11.70542 -11.59628 -11.54191 -11.15194 -10.68075 -9.87377 -9.59755 -8.19814 -6.24924 -0.73462 -0.51092 0.32158 0.54790 0.93766 1.48422 1.51139 1.57849 1.75366 1.87172 2.01621 2.03208 2.44091 2.72393 3.08476 3.17590 3.30206 3.77730 3.98063 4.08708 4.18140 4.24603 4.32122 4.33600 4.49557 4.62902 4.67643 4.92113 5.02418 5.03835 5.18479 5.41104 5.55034 5.73713 5.84318 6.37424 6.63010 6.81381 7.39722 8.95581 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.007512 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.009421 B = 3726.626825 C = 5448.420531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.371 3.629 4 N -0.563 5.563 5 S 0.381 5.619 6 C -0.070 4.070 7 C -0.772 4.772 8 S 2.729 3.271 9 O -0.960 6.960 10 O -0.971 6.971 11 N -0.968 5.968 12 C 0.213 3.787 13 C -0.534 4.534 14 H 0.042 0.958 15 C 0.019 3.981 16 N -0.944 5.944 17 Si 0.923 3.077 18 H -0.269 1.269 19 H -0.292 1.292 20 H -0.226 1.226 21 C 0.126 3.874 22 C -0.047 4.047 23 C 0.246 3.754 24 N -0.490 5.490 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.056 0.944 28 H 0.230 0.770 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -0.910 -11.076 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.207 6.207 3 C 0.158 3.842 4 N -0.404 5.404 5 S 0.530 5.470 6 C -0.219 4.219 7 C -0.875 4.875 8 S 2.814 3.186 9 O -0.950 6.950 10 O -0.961 6.961 11 N -0.806 5.806 12 C 0.089 3.911 13 C -0.574 4.574 14 H 0.060 0.940 15 C -0.179 4.179 16 N -0.584 5.584 17 Si 0.746 3.254 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.148 1.148 21 C -0.001 4.001 22 C -0.088 4.088 23 C -0.071 4.071 24 N -0.168 5.168 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.978 -0.916 -11.471 11.676 hybrid contribution 0.884 -0.234 1.112 1.440 sum -1.095 -1.149 -10.358 10.479 Atomic orbital electron populations 1.23274 0.74751 1.05702 1.02672 1.86242 1.25085 1.21832 1.87551 1.19303 0.87987 0.85960 0.90909 1.76293 1.27554 1.01692 1.34863 1.83504 0.88617 1.11601 1.63290 1.27037 1.09266 0.95378 0.90221 1.30222 1.07225 1.20303 1.29761 1.00996 0.72646 0.72447 0.72537 1.93543 1.82261 1.63874 1.55317 1.93516 1.34489 1.81246 1.86878 1.57044 1.48648 1.47019 1.27846 1.19612 0.90663 0.97264 0.83599 1.21634 1.04238 1.24509 1.06988 0.94019 1.25686 1.01300 0.94623 0.96313 1.70051 1.40380 1.32390 1.15589 0.86076 0.80180 0.81768 0.77351 1.19431 1.21873 1.14796 1.21210 0.89714 0.84263 1.04920 1.19950 0.93676 0.87185 1.08027 1.29150 0.93392 0.93358 0.91211 1.81186 1.11694 1.12686 1.11208 0.91339 0.85033 0.92484 0.75320 0.91228 0.92917 0.92698 0.89295 0.88850 0.85163 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.47 113.37 1.19 1.90 16 2 O -0.30 -9.36 7.60 -92.81 -0.71 -10.07 16 3 C 0.37 12.61 7.39 84.92 0.63 13.24 16 4 N -0.56 -18.42 11.14 -176.09 -1.96 -20.38 16 5 S 0.38 10.29 23.71 -56.49 -1.34 8.96 16 6 C -0.07 -2.02 10.81 67.09 0.73 -1.30 16 7 C -0.77 -25.99 5.87 21.54 0.13 -25.87 16 8 S 2.73 92.01 5.42 -56.49 -0.31 91.70 16 9 O -0.96 -32.49 16.61 -126.41 -2.10 -34.59 16 10 O -0.97 -35.37 16.02 -128.00 -2.05 -37.42 16 11 N -0.97 -32.10 2.77 -519.86 -1.44 -33.54 16 12 C 0.21 8.12 4.50 85.63 0.39 8.51 16 13 C -0.53 -26.01 9.94 25.60 0.25 -25.76 16 14 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 15 C 0.02 1.00 5.47 84.65 0.46 1.46 16 16 N -0.94 -53.89 13.96 21.45 0.30 -53.59 16 17 Si 0.92 38.23 27.47 68.60 1.88 40.12 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.23 -7.99 6.54 99.48 0.65 -7.34 16 21 C 0.13 3.51 5.25 86.38 0.45 3.97 16 22 C -0.05 -0.99 6.02 28.79 0.17 -0.82 16 23 C 0.25 6.19 15.43 89.45 1.38 7.57 16 24 N -0.49 -14.90 18.53 20.00 0.37 -14.52 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.23 5.29 7.94 -2.91 -0.02 5.27 16 29 H 0.07 2.35 7.17 -2.39 -0.02 2.33 16 30 H 0.05 2.03 6.34 -2.39 -0.02 2.01 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 33 H 0.09 2.57 5.31 -2.38 -0.01 2.56 16 34 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.14 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -68.88 337.06 -0.48 -69.36 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.09 Total: 11.07 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 5.78 Total: -17.09 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -2.73 Total: -122.04 kcal Atomic # 8 Polarization: -77.22 SS G_CDS: -4.86 Total: -82.08 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.88 Total: 40.12 kcal Atomic # 16 Polarization: 102.30 SS G_CDS: -1.65 Total: 100.66 kcal Total: -68.88 -0.48 -69.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363767558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.449 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds