Wall clock time and date at job start Tue Mar 31 2020 16:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47055 * 269.99851 * 3 2 1 5 5 H 1.48491 * 109.47400 * 30.00091 * 3 2 1 6 6 H 1.48503 * 109.47059 * 150.00373 * 3 2 1 7 7 C 1.37876 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 172.22988 * 7 2 1 9 9 C 1.50704 * 120.00251 * 352.23307 * 7 2 1 10 10 C 1.53000 * 115.54717 * 84.78039 * 9 7 2 11 11 S 1.81404 * 109.47089 * 65.20044 * 10 9 7 12 12 O 1.42097 * 110.54489 * 62.18479 * 11 10 9 13 13 O 1.42101 * 110.54072 * 285.43272 * 11 10 9 14 14 N 1.65597 * 104.45100 * 173.80878 * 11 10 9 15 15 C 1.46504 * 119.99865 * 64.99640 * 14 11 10 16 16 C 1.50702 * 109.46720 * 165.00220 * 15 14 11 17 17 N 1.32116 * 120.01255 * 90.00712 * 16 15 14 18 18 C 1.32140 * 120.01805 * 179.97438 * 17 16 15 19 19 C 1.38351 * 120.03213 * 359.97438 * 18 17 16 20 20 N 1.32140 * 120.02102 * 359.97438 * 19 18 17 21 21 C 1.32246 * 119.98371 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01820 * 180.02562 * 21 20 19 23 23 C 1.52996 * 117.50180 * 230.45344 * 9 7 2 24 24 C 1.53001 * 117.49695 * 299.11701 * 9 7 2 25 25 H 0.97002 * 119.99744 * 5.02939 * 1 2 3 26 26 H 1.08991 * 109.47355 * 305.19711 * 10 9 7 27 27 H 1.08998 * 109.47040 * 185.19239 * 10 9 7 28 28 H 0.96999 * 120.00131 * 244.99966 * 14 11 10 29 29 H 1.08995 * 109.47240 * 45.00339 * 15 14 11 30 30 H 1.08995 * 109.47190 * 284.99954 * 15 14 11 31 31 H 1.08004 * 119.98153 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.98668 * 179.72403 * 19 18 17 33 33 H 1.08998 * 117.50271 * 215.00009 * 23 9 7 34 34 H 1.09004 * 117.49831 * 0.02652 * 23 9 7 35 35 H 1.09000 * 117.49854 * 359.97263 * 24 9 7 36 36 H 1.08995 * 117.49675 * 144.97164 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0770 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1775 10 6 0.6667 -3.0923 -1.0986 11 16 2.0069 -3.5643 -2.2264 12 8 2.8264 -4.5639 -1.6363 13 8 2.5777 -2.4125 -2.8321 14 7 1.2436 -4.3447 -3.4716 15 6 0.3176 -3.6110 -4.3379 16 6 0.0486 -4.4170 -5.5825 17 7 -0.9550 -5.2758 -5.6096 18 6 -1.1912 -5.9823 -6.7011 19 6 -0.3881 -5.8229 -7.8163 20 7 0.6154 -4.9636 -7.7911 21 6 0.8525 -4.2562 -6.6992 22 17 2.1702 -3.1266 -6.6652 23 6 1.7802 -3.4650 1.2391 24 6 0.4824 -2.6897 1.4797 25 1 -0.4850 0.8368 -0.0736 26 1 0.0273 -2.3543 -1.5829 27 1 0.0774 -3.9737 -0.8458 28 1 1.4096 -5.2876 -3.6274 29 1 0.7593 -2.6534 -4.6135 30 1 -0.6186 -3.4398 -3.8066 31 1 -2.0120 -6.6838 -6.7228 32 1 -0.5791 -6.4039 -8.7065 33 1 1.6981 -4.5313 1.0285 34 1 2.6589 -3.1646 1.8099 35 1 0.5079 -1.8796 2.2085 36 1 -0.4537 -3.2456 1.4272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363871603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:09 Heat of formation + Delta-G solvation = -0.767442 kcal Electronic energy + Delta-G solvation = -23958.141957 eV Core-core repulsion = 20210.764828 eV Total energy + Delta-G solvation = -3747.377129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55258 -37.04836 -36.76057 -36.34908 -35.90227 -35.08894 -34.25966 -32.04350 -31.55321 -28.17866 -26.98587 -25.45230 -24.94728 -23.10242 -21.21417 -19.78690 -18.77846 -18.33517 -17.74495 -17.28701 -16.68339 -16.27637 -15.74971 -15.22628 -15.12452 -14.72420 -14.40003 -14.11386 -13.79895 -13.64513 -13.17150 -12.91946 -12.48245 -12.09980 -11.95419 -11.83721 -11.62634 -11.42271 -11.30711 -11.27621 -11.15018 -11.01425 -10.93577 -10.58012 -10.45775 -10.13003 -9.77251 -9.61278 -9.49578 -9.30343 -8.95563 -8.56258 -8.10249 -6.14081 -4.24511 0.13607 0.56183 1.06292 1.44574 3.05026 3.31273 3.36977 3.42095 3.48301 3.58035 3.83320 3.85557 4.37529 4.47858 4.59755 4.61027 4.75920 4.98175 5.14072 5.20441 5.31859 5.46420 5.59558 5.74291 5.91467 5.98720 6.25702 6.36845 6.60763 6.66054 6.72343 6.97999 7.10276 7.20163 7.24455 7.39143 7.80565 8.20248 8.81075 9.46786 10.93566 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.003953 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.183227 B = 7082.037101 C = 7674.284086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.553 4.553 11 S 2.605 3.395 12 O -0.970 6.970 13 O -0.942 6.942 14 N -1.126 6.126 15 C 0.167 3.833 16 C 0.095 3.905 17 N -0.408 5.408 18 C 0.051 3.949 19 C 0.070 3.930 20 N -0.433 5.433 21 C 0.133 3.867 22 Cl 0.011 6.989 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.263 0.737 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.410 0.590 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -11.213 -13.710 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.686 4.686 11 S 2.702 3.298 12 O -0.960 6.960 13 O -0.932 6.932 14 N -0.882 5.882 15 C 0.039 3.961 16 C -0.048 4.048 17 N -0.123 5.123 18 C -0.109 4.109 19 C -0.091 4.091 20 N -0.150 5.150 21 C -0.034 4.034 22 Cl 0.039 6.961 23 C -0.246 4.246 24 C -0.180 4.180 25 H 0.073 0.927 26 H 0.153 0.847 27 H 0.119 0.881 28 H 0.242 0.758 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.198 0.802 32 H 0.197 0.803 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.083 -10.611 -13.580 17.711 hybrid contribution -0.356 0.449 -0.184 0.602 sum -4.439 -10.163 -13.764 17.676 Atomic orbital electron populations 1.69975 1.06028 1.27192 1.47783 1.24938 0.94785 0.99178 0.93296 0.86594 0.80150 0.82848 0.78684 1.20013 1.21099 1.19441 1.20519 0.93700 0.88560 1.52515 0.91335 1.18285 0.99044 0.94358 0.84284 1.29979 1.16407 1.08615 1.13638 1.05302 0.76498 0.73795 0.74174 1.93515 1.65280 1.59545 1.77677 1.93545 1.74725 1.50601 1.74345 1.56024 1.61915 1.22497 1.47741 1.20121 0.95262 0.93990 0.86678 1.22024 0.91362 0.95770 0.95596 1.68453 1.14412 1.02912 1.26539 1.23973 0.99935 0.97831 0.89184 1.23865 0.90342 0.94767 1.00143 1.67921 1.17124 1.04423 1.25488 1.22861 0.93402 0.95323 0.91810 1.98492 1.43710 1.55948 1.97938 1.23203 0.98702 0.96043 1.06631 1.22556 0.92577 1.01021 1.01830 0.92724 0.84717 0.88060 0.75763 0.87583 0.88847 0.80217 0.80254 0.90676 0.89513 0.89568 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.61 12.98 55.43 0.72 -22.89 16 2 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 3 Si 0.89 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.88 8.18 -34.44 -0.28 -14.16 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C 0.04 1.02 1.32 -155.66 -0.21 0.82 16 10 C -0.55 -11.27 5.93 37.16 0.22 -11.05 16 11 S 2.60 51.27 5.19 -107.50 -0.56 50.72 16 12 O -0.97 -20.97 18.08 -57.54 -1.04 -22.01 16 13 O -0.94 -21.50 17.17 -57.54 -0.99 -22.49 16 14 N -1.13 -16.77 5.88 -11.66 -0.07 -16.83 16 15 C 0.17 2.28 6.04 -5.19 -0.03 2.25 16 16 C 0.10 1.18 6.19 -82.36 -0.51 0.68 16 17 N -0.41 -4.49 10.42 -9.26 -0.10 -4.59 16 18 C 0.05 0.39 11.22 -17.38 -0.20 0.19 16 19 C 0.07 0.52 11.22 -17.38 -0.20 0.33 16 20 N -0.43 -4.87 10.49 -10.17 -0.11 -4.98 16 21 C 0.13 1.69 7.28 -17.27 -0.13 1.56 16 22 Cl 0.01 0.14 27.48 -51.86 -1.42 -1.28 16 23 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 24 C -0.14 -3.16 9.49 -26.69 -0.25 -3.42 16 25 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 26 H 0.13 2.80 8.14 -51.93 -0.42 2.38 16 27 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 28 H 0.41 5.36 8.61 -34.47 -0.30 5.06 16 29 H 0.11 1.52 6.46 -51.93 -0.34 1.19 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 35 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -33.44 345.03 -9.30 -42.74 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.98 Total: 5.77 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.94 Total: -25.47 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.45 Total: -49.28 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -2.03 Total: -44.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 51.27 SS G_CDS: -0.56 Total: 50.72 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.42 Total: -1.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.44 -9.30 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363871603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.973 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds