Wall clock time and date at job start Tue Mar 31 2020 16:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47055 * 269.99851 * 3 2 1 5 5 H 1.48491 * 109.47400 * 30.00091 * 3 2 1 6 6 H 1.48503 * 109.47059 * 150.00373 * 3 2 1 7 7 C 1.37876 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 172.22988 * 7 2 1 9 9 C 1.50704 * 120.00251 * 352.23307 * 7 2 1 10 10 C 1.53000 * 115.54717 * 84.78039 * 9 7 2 11 11 S 1.81404 * 109.47089 * 65.20044 * 10 9 7 12 12 O 1.42097 * 110.54489 * 62.18479 * 11 10 9 13 13 O 1.42101 * 110.54072 * 285.43272 * 11 10 9 14 14 N 1.65597 * 104.45100 * 173.80878 * 11 10 9 15 15 C 1.46504 * 119.99865 * 64.99640 * 14 11 10 16 16 C 1.50702 * 109.46720 * 165.00220 * 15 14 11 17 17 N 1.32116 * 120.01255 * 90.00712 * 16 15 14 18 18 C 1.32140 * 120.01805 * 179.97438 * 17 16 15 19 19 C 1.38351 * 120.03213 * 359.97438 * 18 17 16 20 20 N 1.32140 * 120.02102 * 359.97438 * 19 18 17 21 21 C 1.32246 * 119.98371 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01820 * 180.02562 * 21 20 19 23 23 C 1.52996 * 117.50180 * 230.45344 * 9 7 2 24 24 C 1.53001 * 117.49695 * 299.11701 * 9 7 2 25 25 H 0.97002 * 119.99744 * 5.02939 * 1 2 3 26 26 H 1.08991 * 109.47355 * 305.19711 * 10 9 7 27 27 H 1.08998 * 109.47040 * 185.19239 * 10 9 7 28 28 H 0.96999 * 120.00131 * 244.99966 * 14 11 10 29 29 H 1.08995 * 109.47240 * 45.00339 * 15 14 11 30 30 H 1.08995 * 109.47190 * 284.99954 * 15 14 11 31 31 H 1.08004 * 119.98153 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.98668 * 179.72403 * 19 18 17 33 33 H 1.08998 * 117.50271 * 215.00009 * 23 9 7 34 34 H 1.09004 * 117.49831 * 0.02652 * 23 9 7 35 35 H 1.09000 * 117.49854 * 359.97263 * 24 9 7 36 36 H 1.08995 * 117.49675 * 144.97164 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0770 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1775 10 6 0.6667 -3.0923 -1.0986 11 16 2.0069 -3.5643 -2.2264 12 8 2.8264 -4.5639 -1.6363 13 8 2.5777 -2.4125 -2.8321 14 7 1.2436 -4.3447 -3.4716 15 6 0.3176 -3.6110 -4.3379 16 6 0.0486 -4.4170 -5.5825 17 7 -0.9550 -5.2758 -5.6096 18 6 -1.1912 -5.9823 -6.7011 19 6 -0.3881 -5.8229 -7.8163 20 7 0.6154 -4.9636 -7.7911 21 6 0.8525 -4.2562 -6.6992 22 17 2.1702 -3.1266 -6.6652 23 6 1.7802 -3.4650 1.2391 24 6 0.4824 -2.6897 1.4797 25 1 -0.4850 0.8368 -0.0736 26 1 0.0273 -2.3543 -1.5829 27 1 0.0774 -3.9737 -0.8458 28 1 1.4096 -5.2876 -3.6274 29 1 0.7593 -2.6534 -4.6135 30 1 -0.6186 -3.4398 -3.8066 31 1 -2.0120 -6.6838 -6.7228 32 1 -0.5791 -6.4039 -8.7065 33 1 1.6981 -4.5313 1.0285 34 1 2.6589 -3.1646 1.8099 35 1 0.5079 -1.8796 2.2085 36 1 -0.4537 -3.2456 1.4272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363871603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:08 Heat of formation + Delta-G solvation = -26.529261 kcal Electronic energy + Delta-G solvation = -23959.259073 eV Core-core repulsion = 20210.764828 eV Total energy + Delta-G solvation = -3748.494245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31543 -38.54788 -38.01910 -37.92544 -37.02532 -36.72151 -35.13474 -34.06032 -32.41645 -29.84023 -27.93663 -27.45418 -25.71560 -23.97816 -22.97180 -21.53627 -20.32581 -19.16040 -18.79562 -18.38888 -18.29891 -17.69694 -16.82178 -16.71421 -16.52146 -16.27278 -15.79697 -15.41363 -15.00217 -14.88116 -14.73763 -13.94206 -13.72757 -13.63878 -13.37288 -13.11038 -12.98091 -12.89371 -12.87986 -12.84879 -12.83330 -12.42104 -12.41253 -12.20576 -12.18595 -11.89287 -11.55003 -10.85276 -10.68096 -10.52173 -10.31755 -10.29277 -9.86387 -8.17101 -6.31187 -0.73028 -0.42847 -0.14377 0.57241 1.40138 1.43026 1.51004 1.95507 2.41576 2.46564 2.74320 2.93629 3.07437 3.10449 3.16408 3.40269 3.47927 3.77382 3.89659 4.00279 4.26304 4.30966 4.40399 4.45598 4.52347 4.60883 4.69128 4.87308 5.00052 5.12062 5.23708 5.48686 5.61092 5.74416 5.92012 5.99594 6.25067 6.47042 6.74700 7.41023 8.89930 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.003953 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.183227 B = 7082.037101 C = 7674.284086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.046 3.954 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.551 4.551 11 S 2.624 3.376 12 O -0.992 6.992 13 O -0.981 6.981 14 N -1.109 6.109 15 C 0.161 3.839 16 C 0.081 3.919 17 N -0.424 5.424 18 C 0.067 3.933 19 C 0.086 3.914 20 N -0.455 5.455 21 C 0.116 3.884 22 Cl -0.017 7.017 23 C -0.198 4.198 24 C -0.137 4.137 25 H 0.266 0.734 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.421 0.579 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.228 0.772 32 H 0.227 0.773 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 -13.366 -14.920 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.157 4.157 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.008 3.992 10 C -0.684 4.684 11 S 2.721 3.279 12 O -0.982 6.982 13 O -0.971 6.971 14 N -0.868 5.868 15 C 0.034 3.966 16 C -0.059 4.059 17 N -0.140 5.140 18 C -0.095 4.095 19 C -0.076 4.076 20 N -0.172 5.172 21 C -0.050 4.050 22 Cl 0.011 6.989 23 C -0.235 4.235 24 C -0.177 4.177 25 H 0.075 0.925 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.255 0.745 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.244 0.756 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.893 -12.740 -14.757 20.367 hybrid contribution 0.097 0.944 0.060 0.951 sum -5.796 -11.796 -14.697 19.716 Atomic orbital electron populations 1.70011 1.06533 1.27771 1.48333 1.25462 0.95566 1.01342 0.93335 0.85947 0.79369 0.80454 0.78474 1.20263 1.19900 1.19517 1.20687 0.93144 0.90578 1.52701 0.93324 1.18420 1.00328 0.94298 0.86145 1.29868 1.16623 1.09663 1.12221 1.04457 0.76220 0.72959 0.74271 1.93473 1.66347 1.59829 1.78545 1.93498 1.75886 1.52493 1.75184 1.55465 1.61898 1.22861 1.46601 1.20195 0.95105 0.93736 0.87542 1.21630 0.92542 0.96962 0.94796 1.68461 1.13952 1.03234 1.28345 1.24808 1.00205 0.96721 0.87771 1.24734 0.88246 0.92990 1.01660 1.67930 1.18806 1.05374 1.25080 1.22752 0.93400 0.96081 0.92723 1.98474 1.45135 1.57188 1.98060 1.23252 0.98182 0.96953 1.05131 1.22517 0.93840 1.00806 1.00491 0.92522 0.85421 0.84652 0.74461 0.88981 0.87535 0.75603 0.75636 0.88312 0.89999 0.91529 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.28 12.98 21.45 0.28 -48.00 16 2 C 0.05 2.50 5.38 84.65 0.46 2.95 16 3 Si 0.93 43.75 29.55 68.60 2.03 45.77 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.53 -29.25 8.18 25.60 0.21 -29.04 16 8 H 0.05 2.78 7.83 -2.91 -0.02 2.75 16 9 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 10 C -0.55 -22.05 5.93 71.98 0.43 -21.62 16 11 S 2.62 103.51 5.19 -56.49 -0.29 103.21 16 12 O -0.99 -42.60 18.08 -127.65 -2.31 -44.91 16 13 O -0.98 -46.13 17.17 -127.65 -2.19 -48.32 16 14 N -1.11 -32.47 5.88 -190.79 -1.12 -33.59 16 15 C 0.16 4.37 6.04 85.63 0.52 4.89 16 16 C 0.08 1.93 6.19 42.59 0.26 2.20 16 17 N -0.42 -8.18 10.42 -183.19 -1.91 -10.09 16 18 C 0.07 0.71 11.22 84.67 0.95 1.66 16 19 C 0.09 0.94 11.22 84.67 0.95 1.89 16 20 N -0.45 -9.33 10.49 -186.09 -1.95 -11.28 16 21 C 0.12 2.86 7.28 84.70 0.62 3.47 16 22 Cl -0.02 -0.48 27.48 -2.72 -0.07 -0.55 16 23 C -0.20 -8.43 9.96 30.62 0.30 -8.12 16 24 C -0.14 -6.07 9.49 30.62 0.29 -5.77 16 25 H 0.27 13.70 8.32 -92.71 -0.77 12.92 16 26 H 0.13 5.30 8.14 -2.39 -0.02 5.28 16 27 H 0.14 4.36 8.09 -2.39 -0.02 4.34 16 28 H 0.42 10.59 8.61 -96.75 -0.83 9.76 16 29 H 0.09 2.75 6.46 -2.39 -0.02 2.73 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.23 0.20 8.06 -2.91 -0.02 0.18 16 32 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 35 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 36 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -73.78 345.03 -2.33 -76.11 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.30 Total: 18.73 kcal Atomic # 6 Polarization: -51.98 SS G_CDS: 4.92 Total: -47.07 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -4.70 Total: -102.96 kcal Atomic # 8 Polarization: -88.74 SS G_CDS: -4.50 Total: -93.23 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.29 Total: 103.21 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.07 Total: -0.55 kcal Total: -73.78 -2.33 -76.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363871603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds