Wall clock time and date at job start Tue Mar 31 2020 16:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99536 * 2 1 4 4 H 1.48504 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47170 * 299.99614 * 3 2 1 6 6 H 1.48502 * 109.47466 * 60.00071 * 3 2 1 7 7 C 1.37868 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00265 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46581 * 60.00126 * 9 7 2 11 11 N 1.46496 * 109.47113 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99867 * 204.99788 * 11 9 7 13 13 O 1.21530 * 119.99851 * 0.28265 * 12 11 9 14 14 C 1.48056 * 119.99913 * 179.97438 * 12 11 9 15 15 C 1.39521 * 119.46474 * 179.73040 * 14 12 11 16 16 C 1.38461 * 119.39109 * 179.76221 * 15 14 12 17 17 C 1.38668 * 118.36295 * 0.51174 * 16 15 14 18 18 O 1.35039 * 134.03433 * 179.76961 * 17 16 15 19 19 C 1.34379 * 108.12795 * 179.97438 * 18 17 16 20 20 O 1.35080 * 124.88722 * 180.02562 * 19 18 17 21 21 N 1.30717 * 110.21642 * 0.02562 * 19 18 17 22 22 C 1.36015 * 108.83358 * 359.97438 * 21 19 18 23 23 N 1.32533 * 133.38966 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47123 * 299.99974 * 9 7 2 25 25 F 1.39903 * 109.47154 * 300.00050 * 24 9 7 26 26 F 1.39905 * 109.47086 * 59.99481 * 24 9 7 27 27 F 1.39896 * 109.47042 * 179.97438 * 24 9 7 28 28 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00085 * 25.00393 * 11 9 7 30 30 H 1.08003 * 120.30934 * 0.02562 * 15 14 12 31 31 H 1.07999 * 120.82154 * 180.24813 * 16 15 14 32 32 H 0.96696 * 114.00401 * 269.98238 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6242 -2.5575 -0.8880 11 7 2.2032 -3.6126 0.0015 12 6 1.8367 -4.8124 -0.4910 13 8 0.7181 -4.9693 -0.9395 14 6 2.7991 -5.9376 -0.4917 15 6 2.4061 -7.1765 -0.9990 16 6 3.3089 -8.2262 -1.0035 17 6 4.5776 -8.0063 -0.4889 18 8 5.6750 -8.7781 -0.3351 19 6 6.6368 -8.0293 0.2308 20 8 7.8777 -8.4672 0.5357 21 7 6.1985 -6.8164 0.4436 22 6 4.9106 -6.7332 0.0141 23 7 4.0185 -5.7533 -0.0044 24 6 0.3720 -2.5794 1.2513 25 9 1.1768 -2.5045 2.3933 26 9 -0.5371 -1.5160 1.2510 27 9 -0.3278 -3.7908 1.2521 28 1 -0.4850 0.8400 0.0004 29 1 3.0973 -3.4863 0.3558 30 1 1.4082 -7.3143 -1.3886 31 1 3.0305 -9.1938 -1.3943 32 1 7.9567 -8.8371 1.4256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364184790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:21 Heat of formation + Delta-G solvation = -139.554661 kcal Electronic energy + Delta-G solvation = -28230.234287 eV Core-core repulsion = 23358.829036 eV Total energy + Delta-G solvation = -4871.405251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.36615 -46.02135 -45.62537 -43.76463 -40.12323 -38.64898 -37.97369 -35.16121 -34.76633 -32.95237 -32.28450 -30.28747 -28.41881 -25.28765 -24.55425 -24.03582 -22.58498 -21.94451 -20.37795 -20.12044 -18.94631 -18.07862 -17.78423 -17.23717 -16.81522 -16.78952 -16.60218 -15.90370 -15.50342 -14.98600 -14.94576 -14.54178 -14.44442 -14.04317 -13.69880 -13.27000 -13.07236 -12.94118 -12.91126 -12.51129 -12.40976 -12.28450 -11.99093 -11.83787 -11.80567 -11.35238 -11.18778 -10.86821 -10.82690 -10.44153 -10.09454 -9.84009 -9.66368 -9.46191 -9.10744 -8.73659 -8.34485 -6.24276 -4.47604 0.10454 0.35905 1.35138 1.80245 2.60050 2.81676 3.20011 3.27566 3.31390 3.48502 3.74845 3.81626 3.97998 4.21955 4.49714 4.53166 4.77419 4.79873 4.92822 5.02069 5.21585 5.47557 5.60557 5.80245 5.84848 5.94453 6.18871 6.49371 6.84866 6.89229 7.04573 7.36449 7.48383 7.62738 8.21527 8.47466 8.69599 9.20104 10.67577 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.003473 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.223159 B = 8061.103635 C = 8920.921002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.241 3.759 10 H 0.090 0.910 11 N -0.684 5.684 12 C 0.562 3.438 13 O -0.522 6.522 14 C 0.127 3.873 15 C -0.093 4.093 16 C -0.043 4.043 17 C -0.024 4.024 18 O -0.220 6.220 19 C 0.443 3.557 20 O -0.402 6.402 21 N -0.446 5.446 22 C 0.241 3.759 23 N -0.406 5.406 24 C 0.417 3.583 25 F -0.207 7.207 26 F -0.135 7.135 27 F -0.218 7.218 28 H 0.268 0.732 29 H 0.412 0.588 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -16.791 0.239 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.136 3.864 10 H 0.107 0.893 11 N -0.332 5.332 12 C 0.344 3.656 13 O -0.397 6.397 14 C -0.022 4.022 15 C -0.114 4.114 16 C -0.070 4.070 17 C -0.077 4.077 18 O -0.113 6.113 19 C 0.189 3.811 20 O -0.211 6.211 21 N -0.190 5.190 22 C 0.001 3.999 23 N -0.120 5.120 24 C 0.361 3.639 25 F -0.189 7.189 26 F -0.116 7.116 27 F -0.200 7.200 28 H 0.079 0.921 29 H 0.248 0.752 30 H 0.191 0.809 31 H 0.175 0.825 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 8.835 -15.326 0.017 17.690 hybrid contribution 0.373 -0.806 0.454 0.997 sum 9.208 -16.132 0.471 18.581 Atomic orbital electron populations 1.70402 1.05853 1.27338 1.43759 1.25073 0.95163 1.00146 0.93948 0.86138 0.79954 0.81807 0.77864 1.19273 1.20551 1.20539 1.20936 0.94022 0.87862 1.55927 0.90127 1.19881 0.88701 0.85728 0.92066 0.89291 1.46013 1.17939 1.09629 1.59651 1.17671 0.85920 0.82387 0.79579 1.90818 1.19580 1.82566 1.46751 1.21529 0.89849 0.95058 0.95771 1.22085 1.01392 0.90732 0.97205 1.20374 0.87245 1.01244 0.98093 1.21073 0.89016 0.92338 1.05302 1.84474 1.20015 1.40191 1.66580 1.22458 0.83467 0.83169 0.91977 1.84902 1.15217 1.80894 1.40059 1.70956 1.08603 1.16611 1.22863 1.19827 0.91259 0.89163 0.99669 1.66719 1.00522 1.31375 1.13408 1.23106 0.80827 0.72854 0.87125 1.93005 1.74330 1.96158 1.55399 1.93414 1.68304 1.53691 1.96193 1.93063 1.81479 1.48486 1.96984 0.92134 0.75187 0.80918 0.82465 0.71336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.82 9.50 55.43 0.53 -22.29 16 2 C 0.07 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.55 -14.15 8.46 -34.44 -0.29 -14.44 16 8 H 0.08 2.00 7.74 -52.48 -0.41 1.59 16 9 C 0.24 5.98 2.21 -69.08 -0.15 5.83 16 10 H 0.09 2.40 7.57 -51.93 -0.39 2.00 16 11 N -0.68 -14.55 4.97 -55.81 -0.28 -14.83 16 12 C 0.56 11.09 7.34 -12.23 -0.09 11.00 16 13 O -0.52 -11.35 14.88 5.34 0.08 -11.27 16 14 C 0.13 2.03 6.74 -83.03 -0.56 1.47 16 15 C -0.09 -1.13 9.61 -39.02 -0.38 -1.50 16 16 C -0.04 -0.42 10.17 -39.34 -0.40 -0.82 16 17 C -0.02 -0.29 7.44 -38.43 -0.29 -0.57 16 18 O -0.22 -2.33 10.78 -19.86 -0.21 -2.55 16 19 C 0.44 4.58 9.53 52.29 0.50 5.08 16 20 O -0.40 -2.54 13.62 -40.25 -0.55 -3.09 16 21 N -0.45 -6.23 11.37 -14.31 -0.16 -6.39 16 22 C 0.24 3.59 8.38 -157.08 -1.32 2.27 16 23 N -0.41 -6.74 9.57 -9.24 -0.09 -6.83 16 24 C 0.42 10.64 2.81 37.16 0.10 10.75 16 25 F -0.21 -5.17 16.94 2.25 0.04 -5.13 16 26 F -0.13 -3.70 12.91 2.25 0.03 -3.67 16 27 F -0.22 -5.42 15.69 2.25 0.04 -5.38 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.41 8.29 7.85 -40.82 -0.32 7.97 16 30 H 0.17 1.81 7.61 -52.48 -0.40 1.41 16 31 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.42 0.01 9.06 45.56 0.41 0.42 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -32.80 305.18 -4.63 -37.43 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -0.66 Total: 3.51 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: -2.96 Total: 20.67 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.00 Total: -50.34 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.68 Total: -16.91 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 0.10 Total: -14.18 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.80 -4.63 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364184790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.129 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds