Wall clock time and date at job start Tue Mar 31 2020 16:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99536 * 2 1 4 4 H 1.48504 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47170 * 299.99614 * 3 2 1 6 6 H 1.48502 * 109.47466 * 60.00071 * 3 2 1 7 7 C 1.37868 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00265 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46581 * 60.00126 * 9 7 2 11 11 N 1.46496 * 109.47113 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99867 * 204.99788 * 11 9 7 13 13 O 1.21530 * 119.99851 * 0.28265 * 12 11 9 14 14 C 1.48056 * 119.99913 * 179.97438 * 12 11 9 15 15 C 1.39521 * 119.46474 * 179.73040 * 14 12 11 16 16 C 1.38461 * 119.39109 * 179.76221 * 15 14 12 17 17 C 1.38668 * 118.36295 * 0.51174 * 16 15 14 18 18 O 1.35039 * 134.03433 * 179.76961 * 17 16 15 19 19 C 1.34379 * 108.12795 * 179.97438 * 18 17 16 20 20 O 1.35080 * 124.88722 * 180.02562 * 19 18 17 21 21 N 1.30717 * 110.21642 * 0.02562 * 19 18 17 22 22 C 1.36015 * 108.83358 * 359.97438 * 21 19 18 23 23 N 1.32533 * 133.38966 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47123 * 299.99974 * 9 7 2 25 25 F 1.39903 * 109.47154 * 300.00050 * 24 9 7 26 26 F 1.39905 * 109.47086 * 59.99481 * 24 9 7 27 27 F 1.39896 * 109.47042 * 179.97438 * 24 9 7 28 28 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00085 * 25.00393 * 11 9 7 30 30 H 1.08003 * 120.30934 * 0.02562 * 15 14 12 31 31 H 1.07999 * 120.82154 * 180.24813 * 16 15 14 32 32 H 0.96696 * 114.00401 * 269.98238 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6242 -2.5575 -0.8880 11 7 2.2032 -3.6126 0.0015 12 6 1.8367 -4.8124 -0.4910 13 8 0.7181 -4.9693 -0.9395 14 6 2.7991 -5.9376 -0.4917 15 6 2.4061 -7.1765 -0.9990 16 6 3.3089 -8.2262 -1.0035 17 6 4.5776 -8.0063 -0.4889 18 8 5.6750 -8.7781 -0.3351 19 6 6.6368 -8.0293 0.2308 20 8 7.8777 -8.4672 0.5357 21 7 6.1985 -6.8164 0.4436 22 6 4.9106 -6.7332 0.0141 23 7 4.0185 -5.7533 -0.0044 24 6 0.3720 -2.5794 1.2513 25 9 1.1768 -2.5045 2.3933 26 9 -0.5371 -1.5160 1.2510 27 9 -0.3278 -3.7908 1.2521 28 1 -0.4850 0.8400 0.0004 29 1 3.0973 -3.4863 0.3558 30 1 1.4082 -7.3143 -1.3886 31 1 3.0305 -9.1938 -1.3943 32 1 7.9567 -8.8371 1.4256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364184790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:20 Heat of formation + Delta-G solvation = -167.860315 kcal Electronic energy + Delta-G solvation = -28231.461712 eV Core-core repulsion = 23358.829036 eV Total energy + Delta-G solvation = -4872.632676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43240 -48.06882 -47.73418 -44.66013 -41.37329 -39.76976 -38.82715 -36.64360 -36.00520 -34.60403 -33.53863 -31.44843 -30.13168 -26.70728 -26.28494 -24.98682 -23.66444 -23.45387 -21.99196 -20.87849 -20.29346 -19.22931 -18.94829 -18.80567 -18.67286 -18.54759 -18.04199 -17.64350 -16.88464 -16.38920 -16.10427 -15.96545 -15.82709 -15.11993 -14.98726 -14.85439 -14.67224 -14.48835 -14.47933 -14.32368 -14.21375 -14.03468 -13.87328 -13.62037 -13.08442 -12.81211 -12.69839 -12.65595 -12.27696 -12.22443 -11.58479 -11.49859 -10.81204 -10.71635 -10.69163 -10.20563 -10.02614 -8.23034 -6.53218 -0.74904 -0.70703 0.56185 0.94317 1.44724 1.46672 1.51120 1.59518 1.64783 2.03871 2.36854 2.44766 2.58785 2.88001 2.92415 3.02565 3.51227 3.64175 3.76773 3.83118 3.92697 4.08008 4.18020 4.42917 4.61414 4.70369 4.87389 5.03136 5.28561 5.49294 5.62744 5.93149 6.15689 6.31616 6.50241 6.61709 7.04486 7.20157 8.69984 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.003473 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.223159 B = 8061.103635 C = 8920.921002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.020 3.980 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.249 3.751 10 H 0.061 0.939 11 N -0.688 5.688 12 C 0.562 3.438 13 O -0.548 6.548 14 C 0.104 3.896 15 C -0.089 4.089 16 C -0.012 4.012 17 C -0.018 4.018 18 O -0.209 6.209 19 C 0.472 3.528 20 O -0.394 6.394 21 N -0.492 5.492 22 C 0.218 3.782 23 N -0.440 5.440 24 C 0.415 3.585 25 F -0.204 7.204 26 F -0.147 7.147 27 F -0.216 7.216 28 H 0.270 0.730 29 H 0.416 0.584 30 H 0.189 0.811 31 H 0.209 0.791 32 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -18.870 -0.025 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.600 4.600 8 H 0.103 0.897 9 C 0.142 3.858 10 H 0.079 0.921 11 N -0.337 5.337 12 C 0.347 3.653 13 O -0.425 6.425 14 C -0.043 4.043 15 C -0.110 4.110 16 C -0.039 4.039 17 C -0.072 4.072 18 O -0.102 6.102 19 C 0.218 3.782 20 O -0.207 6.207 21 N -0.237 5.237 22 C -0.022 4.022 23 N -0.155 5.155 24 C 0.359 3.641 25 F -0.186 7.186 26 F -0.128 7.128 27 F -0.198 7.198 28 H 0.080 0.920 29 H 0.253 0.747 30 H 0.206 0.794 31 H 0.226 0.774 32 H 0.322 0.678 Dipole moment (debyes) X Y Z Total from point charges 10.627 -17.445 -0.220 20.428 hybrid contribution -0.025 -0.337 0.571 0.663 sum 10.602 -17.782 0.351 20.706 Atomic orbital electron populations 1.70506 1.07243 1.28224 1.44454 1.25921 0.95930 1.03412 0.93338 0.85137 0.78922 0.77568 0.77876 1.18518 1.19887 1.20427 1.21204 0.94355 0.88471 1.55994 0.89668 1.19498 0.88828 0.86996 0.90471 0.92139 1.45908 1.17498 1.09689 1.60613 1.18210 0.86360 0.82642 0.78122 1.90782 1.20986 1.83141 1.47627 1.20985 0.89525 0.95002 0.98742 1.22237 1.02546 0.89623 0.96591 1.20831 0.85365 1.02252 0.95402 1.21254 0.89970 0.91311 1.04682 1.84523 1.19644 1.39545 1.66497 1.22533 0.83801 0.82422 0.89400 1.84901 1.12666 1.80767 1.42412 1.70921 1.08890 1.18608 1.25285 1.19968 0.91587 0.90092 1.00543 1.66464 1.01143 1.33121 1.14754 1.23217 0.80774 0.72593 0.87555 1.92996 1.74213 1.96151 1.55270 1.93385 1.68787 1.54373 1.96288 1.93057 1.81470 1.48235 1.97002 0.91970 0.74714 0.79357 0.77386 0.67835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.17 9.50 21.44 0.20 -47.97 16 2 C 0.02 1.03 5.20 84.65 0.44 1.47 16 3 Si 0.98 41.56 29.54 68.60 2.03 43.59 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.56 -29.53 8.46 25.60 0.22 -29.31 16 8 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 9 C 0.25 12.76 2.21 44.25 0.10 12.86 16 10 H 0.06 3.44 7.57 -2.39 -0.02 3.42 16 11 N -0.69 -30.36 4.97 -448.78 -2.23 -32.59 16 12 C 0.56 22.82 7.34 86.85 0.64 23.46 16 13 O -0.55 -24.54 14.88 -3.81 -0.06 -24.60 16 14 C 0.10 3.34 6.74 41.94 0.28 3.62 16 15 C -0.09 -1.99 9.61 22.63 0.22 -1.77 16 16 C -0.01 -0.20 10.17 22.43 0.23 0.03 16 17 C -0.02 -0.39 7.44 23.02 0.17 -0.22 16 18 O -0.21 -3.73 10.78 11.66 0.13 -3.60 16 19 C 0.47 8.53 9.53 130.41 1.24 9.77 16 20 O -0.39 -3.66 13.62 -61.27 -0.83 -4.50 16 21 N -0.49 -13.18 11.37 -427.50 -4.86 -18.04 16 22 C 0.22 6.32 8.38 134.44 1.13 7.44 16 23 N -0.44 -14.74 9.57 -183.14 -1.75 -16.49 16 24 C 0.41 21.76 2.81 71.98 0.20 21.96 16 25 F -0.20 -10.39 16.94 44.97 0.76 -9.63 16 26 F -0.15 -8.29 12.91 44.97 0.58 -7.70 16 27 F -0.22 -10.99 15.69 44.97 0.71 -10.28 16 28 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.42 17.43 7.85 -92.71 -0.73 16.71 16 30 H 0.19 3.56 7.61 -2.91 -0.02 3.54 16 31 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.45 -1.69 9.06 -74.06 -0.67 -2.36 16 Total: -1.00 -73.31 305.18 -0.60 -73.92 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.13 Total: 8.58 kcal Atomic # 6 Polarization: 44.47 SS G_CDS: 4.86 Total: 49.33 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -8.64 Total: -115.10 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.77 Total: -32.70 kcal Atomic # 9 Polarization: -29.66 SS G_CDS: 2.05 Total: -27.62 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -73.31 -0.60 -73.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364184790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.944 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds