Wall clock time and date at job start Tue Mar 31 2020 16:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00540 * 2 1 4 4 H 1.48501 * 109.47124 * 265.16247 * 3 2 1 5 5 H 1.48504 * 109.46636 * 25.16145 * 3 2 1 6 6 H 1.48499 * 109.47289 * 145.16153 * 3 2 1 7 7 C 1.37886 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 354.02445 * 7 2 1 9 9 C 1.50697 * 120.00135 * 174.03099 * 7 2 1 10 10 H 1.08992 * 109.47163 * 56.78368 * 9 7 2 11 11 N 1.46505 * 109.46811 * 296.78512 * 9 7 2 12 12 C 1.34775 * 119.99881 * 155.00247 * 11 9 7 13 13 O 1.21530 * 120.00138 * 359.97438 * 12 11 9 14 14 C 1.48051 * 119.99961 * 180.02562 * 12 11 9 15 15 C 1.39524 * 119.46607 * 179.73322 * 14 12 11 16 16 C 1.38463 * 119.39025 * 179.74671 * 15 14 12 17 17 C 1.38655 * 118.36193 * 0.48100 * 16 15 14 18 18 O 1.35048 * 134.03368 * 179.77116 * 17 16 15 19 19 C 1.34380 * 108.13093 * 180.02562 * 18 17 16 20 20 O 1.35083 * 124.89188 * 180.02562 * 19 18 17 21 21 N 1.30719 * 110.22089 * 0.02562 * 19 18 17 22 22 C 1.36031 * 108.82370 * 359.97438 * 21 19 18 23 23 N 1.32528 * 133.38194 * 180.02562 * 22 21 19 24 24 C 1.52994 * 109.47184 * 176.78845 * 9 7 2 25 25 F 1.39904 * 109.47374 * 185.24889 * 24 9 7 26 26 F 1.39905 * 109.47361 * 65.24865 * 24 9 7 27 27 F 1.39900 * 109.47211 * 305.25004 * 24 9 7 28 28 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99870 * 335.00442 * 11 9 7 30 30 H 1.08001 * 120.30620 * 359.97438 * 15 14 12 31 31 H 1.08000 * 120.82221 * 180.26206 * 16 15 14 32 32 H 0.96700 * 113.99843 * 269.98808 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3993 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1942 -0.0005 8 1 1.4688 -2.1270 0.0964 9 6 3.5053 -1.1977 -0.1362 10 1 3.9433 -0.5921 0.6571 11 7 3.8792 -0.6408 -1.4387 12 6 5.0921 -0.0783 -1.6080 13 8 5.8757 -0.0326 -0.6801 14 6 5.4697 0.4850 -2.9241 15 6 6.7262 1.0698 -3.0854 16 6 7.0797 1.5914 -4.3184 17 6 6.1584 1.5206 -5.3522 18 8 6.1632 1.9185 -6.6427 19 6 4.9798 1.5878 -7.1867 20 8 4.6231 1.8300 -8.4669 21 7 4.2234 0.9979 -6.2986 22 6 4.9036 0.9230 -5.1229 23 7 4.6059 0.4313 -3.9288 24 6 4.0238 -2.6330 -0.0276 25 9 5.4228 -2.6253 -0.0334 26 9 3.5571 -3.3810 -1.1139 27 9 3.5656 -3.2054 1.1639 28 1 -0.4850 0.8401 0.0004 29 1 3.2536 -0.6769 -2.1792 30 1 7.4181 1.1118 -2.2572 31 1 8.0478 2.0454 -4.4702 32 1 4.1897 2.6842 -8.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364184795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:24 Heat of formation + Delta-G solvation = -159.136196 kcal Electronic energy + Delta-G solvation = -28460.986204 eV Core-core repulsion = 23588.731835 eV Total energy + Delta-G solvation = -4872.254370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.10967 -46.62775 -46.58402 -43.75236 -40.16779 -38.69799 -38.01088 -35.21362 -34.93068 -32.89552 -32.28838 -30.38347 -29.01016 -25.28525 -25.02565 -24.04391 -22.57537 -21.81903 -20.55756 -20.10733 -18.93761 -18.19906 -17.99591 -17.58002 -17.41663 -17.07639 -16.80583 -16.43964 -15.46905 -15.33827 -15.00497 -14.55387 -14.42960 -14.02982 -13.68482 -13.51145 -13.45912 -13.32171 -13.05855 -12.97193 -12.89844 -12.78784 -12.69039 -12.65338 -11.87527 -11.74023 -11.32780 -11.18142 -10.70520 -10.26457 -10.20319 -9.90687 -9.83863 -9.51985 -9.11218 -8.97930 -8.55471 -6.51050 -4.64485 0.11360 0.34826 1.36054 1.81106 2.61002 2.74879 3.10890 3.19971 3.25794 3.38787 3.66030 3.81757 3.88320 3.98529 4.11283 4.48666 4.63474 4.79162 4.94736 4.95009 5.02884 5.18501 5.20725 5.34901 5.47636 5.63160 5.92401 6.33834 6.51168 6.84894 6.90551 6.95195 7.40215 7.84064 8.15433 8.48741 8.60553 9.02623 10.57338 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004325 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.061432 B = 6472.542120 C = 7153.821581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.100 3.900 3 Si 0.869 3.131 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.098 0.902 9 C 0.199 3.801 10 H 0.095 0.905 11 N -0.689 5.689 12 C 0.555 3.445 13 O -0.526 6.526 14 C 0.120 3.880 15 C -0.095 4.095 16 C -0.043 4.043 17 C -0.023 4.023 18 O -0.220 6.220 19 C 0.443 3.557 20 O -0.402 6.402 21 N -0.444 5.444 22 C 0.241 3.759 23 N -0.402 5.402 24 C 0.444 3.556 25 F -0.194 7.194 26 F -0.187 7.187 27 F -0.182 7.182 28 H 0.275 0.725 29 H 0.415 0.585 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 6.656 -11.897 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.110 4.110 3 Si 0.695 3.305 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.575 4.575 8 H 0.116 0.884 9 C 0.096 3.904 10 H 0.113 0.887 11 N -0.342 5.342 12 C 0.338 3.662 13 O -0.402 6.402 14 C -0.028 4.028 15 C -0.116 4.116 16 C -0.070 4.070 17 C -0.076 4.076 18 O -0.113 6.113 19 C 0.189 3.811 20 O -0.210 6.210 21 N -0.188 5.188 22 C 0.001 3.999 23 N -0.117 5.117 24 C 0.388 3.612 25 F -0.175 7.175 26 F -0.169 7.169 27 F -0.163 7.163 28 H 0.085 0.915 29 H 0.254 0.746 30 H 0.190 0.810 31 H 0.176 0.824 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 11.217 5.644 -11.420 16.974 hybrid contribution 1.263 1.780 -0.829 2.335 sum 12.480 7.424 -12.250 18.998 Atomic orbital electron populations 1.69862 1.06347 1.28316 1.44560 1.24880 0.94762 0.99123 0.92223 0.86910 0.80777 0.83031 0.79794 1.19253 1.20947 1.18044 1.20786 0.86315 0.96696 1.53726 0.88439 1.20395 0.99117 0.85501 0.85382 0.88726 1.47592 1.14858 1.55929 1.15825 1.18038 0.83406 0.79180 0.85573 1.90788 1.50830 1.58348 1.40267 1.21585 0.90767 0.97275 0.93205 1.22082 0.96998 0.95183 0.97312 1.20359 0.98717 0.99453 0.88472 1.21067 0.99956 1.03447 0.83160 1.84475 1.37979 1.66528 1.22280 1.22468 0.79664 0.92619 0.86302 1.84903 1.78124 1.43661 1.14340 1.70984 1.28468 1.20996 0.98381 1.19835 0.88901 0.99249 0.91866 1.66714 1.33519 1.14402 0.97027 1.21370 0.74533 0.92010 0.73261 1.93144 1.30986 1.97139 1.96244 1.93104 1.88536 1.79535 1.55706 1.93114 1.88838 1.86756 1.47631 0.91466 0.74630 0.80964 0.82439 0.71323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.81 13.96 55.43 0.77 -23.04 16 2 C 0.10 2.63 5.46 -17.82 -0.10 2.53 16 3 Si 0.87 20.29 26.13 -169.99 -4.44 15.85 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.26 -5.97 6.55 56.52 0.37 -5.60 16 7 C -0.54 -13.89 8.64 -34.44 -0.30 -14.18 16 8 H 0.10 2.73 7.91 -52.48 -0.42 2.31 16 9 C 0.20 4.58 1.41 -69.08 -0.10 4.49 16 10 H 0.10 2.25 6.29 -51.93 -0.33 1.92 16 11 N -0.69 -14.82 3.19 -55.82 -0.18 -15.00 16 12 C 0.55 11.07 7.20 -12.24 -0.09 10.98 16 13 O -0.53 -11.09 14.87 5.34 0.08 -11.01 16 14 C 0.12 2.04 6.74 -83.03 -0.56 1.48 16 15 C -0.09 -1.20 9.61 -39.02 -0.38 -1.57 16 16 C -0.04 -0.45 10.17 -39.34 -0.40 -0.85 16 17 C -0.02 -0.29 7.44 -38.43 -0.29 -0.58 16 18 O -0.22 -2.46 10.78 -19.89 -0.21 -2.68 16 19 C 0.44 4.90 9.53 52.29 0.50 5.40 16 20 O -0.40 -2.79 13.62 -40.25 -0.55 -3.34 16 21 N -0.44 -6.64 11.37 -14.31 -0.16 -6.80 16 22 C 0.24 3.85 8.38 -157.07 -1.32 2.53 16 23 N -0.40 -7.20 9.57 -9.24 -0.09 -7.29 16 24 C 0.44 9.77 2.79 37.15 0.10 9.87 16 25 F -0.19 -4.14 15.84 2.25 0.04 -4.10 16 26 F -0.19 -4.11 16.97 2.25 0.04 -4.07 16 27 F -0.18 -4.00 16.83 2.25 0.04 -3.97 16 28 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.41 8.91 7.90 -40.82 -0.32 8.59 16 30 H 0.17 1.84 7.61 -52.49 -0.40 1.44 16 31 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.43 0.30 9.06 45.56 0.41 0.71 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -32.30 306.40 -3.61 -35.90 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -0.64 Total: 4.81 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: -2.92 Total: 20.11 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.34 Total: -52.13 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.68 Total: -17.02 kcal Atomic # 9 Polarization: -12.25 SS G_CDS: 0.11 Total: -12.13 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.44 Total: 15.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.30 -3.61 -35.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364184795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.231 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds