Wall clock time and date at job start Tue Mar 31 2020 16:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00540 * 2 1 4 4 H 1.48501 * 109.47124 * 265.16247 * 3 2 1 5 5 H 1.48504 * 109.46636 * 25.16145 * 3 2 1 6 6 H 1.48499 * 109.47289 * 145.16153 * 3 2 1 7 7 C 1.37886 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 354.02445 * 7 2 1 9 9 C 1.50697 * 120.00135 * 174.03099 * 7 2 1 10 10 H 1.08992 * 109.47163 * 56.78368 * 9 7 2 11 11 N 1.46505 * 109.46811 * 296.78512 * 9 7 2 12 12 C 1.34775 * 119.99881 * 155.00247 * 11 9 7 13 13 O 1.21530 * 120.00138 * 359.97438 * 12 11 9 14 14 C 1.48051 * 119.99961 * 180.02562 * 12 11 9 15 15 C 1.39524 * 119.46607 * 179.73322 * 14 12 11 16 16 C 1.38463 * 119.39025 * 179.74671 * 15 14 12 17 17 C 1.38655 * 118.36193 * 0.48100 * 16 15 14 18 18 O 1.35048 * 134.03368 * 179.77116 * 17 16 15 19 19 C 1.34380 * 108.13093 * 180.02562 * 18 17 16 20 20 O 1.35083 * 124.89188 * 180.02562 * 19 18 17 21 21 N 1.30719 * 110.22089 * 0.02562 * 19 18 17 22 22 C 1.36031 * 108.82370 * 359.97438 * 21 19 18 23 23 N 1.32528 * 133.38194 * 180.02562 * 22 21 19 24 24 C 1.52994 * 109.47184 * 176.78845 * 9 7 2 25 25 F 1.39904 * 109.47374 * 185.24889 * 24 9 7 26 26 F 1.39905 * 109.47361 * 65.24865 * 24 9 7 27 27 F 1.39900 * 109.47211 * 305.25004 * 24 9 7 28 28 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99870 * 335.00442 * 11 9 7 30 30 H 1.08001 * 120.30620 * 359.97438 * 15 14 12 31 31 H 1.08000 * 120.82221 * 180.26206 * 16 15 14 32 32 H 0.96700 * 113.99843 * 269.98808 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3993 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1942 -0.0005 8 1 1.4688 -2.1270 0.0964 9 6 3.5053 -1.1977 -0.1362 10 1 3.9433 -0.5921 0.6571 11 7 3.8792 -0.6408 -1.4387 12 6 5.0921 -0.0783 -1.6080 13 8 5.8757 -0.0326 -0.6801 14 6 5.4697 0.4850 -2.9241 15 6 6.7262 1.0698 -3.0854 16 6 7.0797 1.5914 -4.3184 17 6 6.1584 1.5206 -5.3522 18 8 6.1632 1.9185 -6.6427 19 6 4.9798 1.5878 -7.1867 20 8 4.6231 1.8300 -8.4669 21 7 4.2234 0.9979 -6.2986 22 6 4.9036 0.9230 -5.1229 23 7 4.6059 0.4313 -3.9288 24 6 4.0238 -2.6330 -0.0276 25 9 5.4228 -2.6253 -0.0334 26 9 3.5571 -3.3810 -1.1139 27 9 3.5656 -3.2054 1.1639 28 1 -0.4850 0.8401 0.0004 29 1 3.2536 -0.6769 -2.1792 30 1 7.4181 1.1118 -2.2572 31 1 8.0478 2.0454 -4.4702 32 1 4.1897 2.6842 -8.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364184795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:23 Heat of formation + Delta-G solvation = -187.260133 kcal Electronic energy + Delta-G solvation = -28462.205750 eV Core-core repulsion = 23588.731835 eV Total energy + Delta-G solvation = -4873.473915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.91162 -48.41296 -48.39492 -44.68945 -41.45585 -39.85508 -38.86233 -36.83812 -36.03948 -34.55955 -33.62727 -31.66664 -30.55719 -26.98768 -26.40723 -25.01251 -23.55934 -23.40788 -22.10657 -20.91411 -20.43384 -19.62963 -19.38626 -18.96734 -18.78862 -18.45729 -18.35907 -18.11643 -16.97234 -16.39917 -16.27624 -15.96761 -15.81504 -15.31992 -15.29190 -14.96403 -14.87167 -14.85871 -14.73726 -14.59380 -14.56282 -14.51467 -14.21143 -13.69786 -13.63492 -13.06377 -12.76996 -12.57266 -12.27899 -12.10942 -11.93618 -11.62343 -11.03539 -10.84561 -10.73014 -10.31626 -10.08194 -8.55708 -6.73012 -0.77926 -0.74867 0.52838 0.91190 1.23414 1.27500 1.35858 1.43814 1.61404 1.86725 2.06892 2.15890 2.49380 2.83760 2.86613 3.00773 3.13014 3.33384 3.39742 3.58853 3.69377 3.89895 4.05626 4.39478 4.43937 4.59372 4.70324 4.90119 5.00100 5.22215 5.83601 5.90187 6.12462 6.26806 6.40919 6.54077 6.94173 6.97842 8.56805 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004325 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.061432 B = 6472.542120 C = 7153.821581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.063 3.937 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.207 3.793 10 H 0.091 0.909 11 N -0.698 5.698 12 C 0.556 3.444 13 O -0.540 6.540 14 C 0.094 3.906 15 C -0.089 4.089 16 C -0.012 4.012 17 C -0.017 4.017 18 O -0.208 6.208 19 C 0.472 3.528 20 O -0.393 6.393 21 N -0.494 5.494 22 C 0.216 3.784 23 N -0.444 5.444 24 C 0.447 3.553 25 F -0.186 7.186 26 F -0.188 7.188 27 F -0.182 7.182 28 H 0.279 0.721 29 H 0.414 0.586 30 H 0.194 0.806 31 H 0.212 0.788 32 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.858 8.659 -13.713 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.103 3.897 10 H 0.109 0.891 11 N -0.350 5.350 12 C 0.341 3.659 13 O -0.417 6.417 14 C -0.053 4.053 15 C -0.109 4.109 16 C -0.039 4.039 17 C -0.071 4.071 18 O -0.101 6.101 19 C 0.219 3.781 20 O -0.207 6.207 21 N -0.239 5.239 22 C -0.024 4.024 23 N -0.159 5.159 24 C 0.392 3.608 25 F -0.168 7.168 26 F -0.169 7.169 27 F -0.164 7.164 28 H 0.089 0.911 29 H 0.252 0.748 30 H 0.211 0.789 31 H 0.228 0.772 32 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges 14.016 7.672 -13.253 20.759 hybrid contribution 0.428 1.139 -0.476 1.307 sum 14.443 8.812 -13.729 21.789 Atomic orbital electron populations 1.69941 1.07698 1.29297 1.46443 1.25456 0.95225 1.01781 0.91831 0.86081 0.79684 0.79788 0.79845 1.18909 1.20284 1.17813 1.20742 0.87754 0.95564 1.53905 0.91564 1.20068 0.97299 0.86203 0.86169 0.89114 1.47220 1.16020 1.56935 1.14864 1.18395 0.82279 0.78248 0.86953 1.90762 1.50895 1.58756 1.41303 1.21166 0.92718 0.99749 0.91631 1.22289 0.95341 0.94314 0.98993 1.20868 0.99778 0.96904 0.86309 1.21272 0.99158 1.02625 0.84021 1.84524 1.37843 1.66182 1.21526 1.22523 0.78955 0.90047 0.86608 1.84902 1.78196 1.45909 1.11675 1.70936 1.30197 1.23666 0.99121 1.19986 0.90683 1.00161 0.91597 1.66465 1.34995 1.16187 0.98223 1.21202 0.74784 0.91601 0.73236 1.93153 1.30333 1.97097 1.96216 1.93102 1.88607 1.79464 1.55742 1.93111 1.88904 1.86725 1.47657 0.91084 0.74770 0.78867 0.77153 0.67858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.26 13.96 21.45 0.30 -50.96 16 2 C 0.06 3.40 5.46 84.66 0.46 3.86 16 3 Si 0.92 42.28 26.13 68.60 1.79 44.07 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.25 -11.47 6.55 99.48 0.65 -10.81 16 7 C -0.54 -28.87 8.64 25.60 0.22 -28.65 16 8 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 9 C 0.21 9.67 1.41 44.24 0.06 9.73 16 10 H 0.09 4.33 6.29 -2.39 -0.02 4.31 16 11 N -0.70 -30.32 3.19 -448.79 -1.43 -31.75 16 12 C 0.56 21.91 7.20 86.85 0.63 22.54 16 13 O -0.54 -22.19 14.87 -3.81 -0.06 -22.25 16 14 C 0.09 3.08 6.74 41.94 0.28 3.36 16 15 C -0.09 -1.96 9.61 22.63 0.22 -1.75 16 16 C -0.01 -0.20 10.17 22.42 0.23 0.03 16 17 C -0.02 -0.37 7.44 23.01 0.17 -0.20 16 18 O -0.21 -3.90 10.78 11.56 0.12 -3.77 16 19 C 0.47 9.20 9.53 130.41 1.24 10.44 16 20 O -0.39 -4.17 13.62 -61.30 -0.83 -5.01 16 21 N -0.49 -14.23 11.37 -427.49 -4.86 -19.09 16 22 C 0.22 6.64 8.38 134.44 1.13 7.77 16 23 N -0.44 -15.80 9.57 -183.13 -1.75 -17.55 16 24 C 0.45 19.89 2.79 71.98 0.20 20.09 16 25 F -0.19 -7.89 15.84 44.97 0.71 -7.18 16 26 F -0.19 -8.37 16.97 44.97 0.76 -7.60 16 27 F -0.18 -8.13 16.83 44.97 0.76 -7.37 16 28 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.41 18.30 7.90 -92.71 -0.73 17.57 16 30 H 0.19 3.41 7.61 -2.91 -0.02 3.39 16 31 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.45 -1.05 9.06 -74.06 -0.67 -1.72 16 Total: -1.00 -72.44 306.40 0.16 -72.27 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.19 Total: 8.96 kcal Atomic # 6 Polarization: 42.38 SS G_CDS: 4.84 Total: 47.22 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -7.74 Total: -119.35 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.77 Total: -31.03 kcal Atomic # 9 Polarization: -24.38 SS G_CDS: 2.23 Total: -22.15 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.79 Total: 44.07 kcal Total: -72.44 0.16 -72.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364184795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.988 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds