Wall clock time and date at job start Tue Mar 31 2020 16:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34765 * 116.99815 * 2 1 4 4 O 1.21540 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.47231 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.47062 * 127.20285 * 359.97258 * 5 3 2 7 7 C 1.34159 * 105.94996 * 180.02562 * 6 5 3 8 8 O 1.34221 * 109.14439 * 359.73755 * 7 6 5 9 9 C 1.33627 * 110.92543 * 0.44890 * 8 7 6 10 10 S 1.76199 * 125.81209 * 179.82068 * 9 8 7 11 11 O 1.42096 * 106.40551 * 156.15020 * 10 9 8 12 12 O 1.42104 * 106.39989 * 23.23357 * 10 9 8 13 13 N 1.65600 * 107.21583 * 269.69493 * 10 9 8 14 14 C 1.47577 * 134.49451 * 90.00232 * 13 10 9 15 15 C 1.53947 * 86.11678 * 155.35128 * 14 13 10 16 16 O 1.42893 * 113.74417 * 269.15203 * 15 14 13 17 17 C 1.50710 * 113.73764 * 137.94968 * 15 14 13 18 18 H 1.07994 * 120.00413 * 6.94299 * 17 15 14 19 19 C 1.37873 * 119.99460 * 186.94705 * 17 15 14 20 20 N 1.31516 * 119.99596 * 178.17803 * 19 17 15 21 21 Si 1.86799 * 120.00523 * 358.16911 * 19 17 15 22 22 H 1.48502 * 109.47432 * 270.00789 * 21 19 17 23 23 H 1.48509 * 109.46693 * 30.00560 * 21 19 17 24 24 H 1.48498 * 109.47418 * 149.99892 * 21 19 17 25 25 C 1.47812 * 134.45396 * 269.85881 * 13 10 9 26 26 H 1.08997 * 109.47140 * 300.00337 * 1 2 3 27 27 H 1.09000 * 109.46541 * 60.00569 * 1 2 3 28 28 H 1.09003 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.07995 * 127.02254 * 359.97438 * 6 5 3 30 30 H 1.07993 * 125.42711 * 180.02562 * 7 6 5 31 31 H 1.08996 * 113.77269 * 41.04893 * 14 13 10 32 32 H 1.09002 * 113.76345 * 269.65182 * 14 13 10 33 33 H 0.96694 * 114.00533 * 162.49871 * 16 15 14 34 34 H 0.96997 * 120.00619 * 358.27359 * 20 19 17 35 35 H 1.09000 * 113.76478 * 90.38153 * 25 13 10 36 36 H 1.09001 * 113.83768 * 318.92344 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4834 0.1546 0.0017 7 6 5.7066 0.7057 0.0025 8 8 5.5871 2.0426 -0.0040 9 6 4.3014 2.4068 0.0007 10 16 3.6990 4.0626 -0.0004 11 8 2.3878 4.0123 -0.5458 12 8 4.7366 4.8668 -0.5444 13 7 3.5303 4.5239 1.5811 14 6 4.4142 5.1720 2.5694 15 6 3.1218 5.6439 3.2600 16 8 2.6601 6.9184 2.8078 17 6 3.1614 5.5326 4.7625 18 1 4.0796 5.2565 5.2595 19 6 2.0254 5.7832 5.5024 20 7 2.0504 5.6512 6.8107 21 14 0.4508 6.3104 4.6469 22 1 0.4130 7.7917 4.5482 23 1 0.4073 5.7223 3.2839 24 1 -0.7198 5.8363 5.4280 25 6 2.4325 4.4538 2.5684 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 4.2446 -0.8986 0.0027 30 1 6.6388 0.1605 0.0030 31 1 5.0136 5.9836 2.1571 32 1 4.9984 4.4693 3.1635 33 1 1.7359 7.1017 3.0250 34 1 2.8608 5.3535 7.2528 35 1 2.4334 3.5398 3.1622 36 1 1.4526 4.6932 2.1553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364824567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:56 Heat of formation + Delta-G solvation = -117.268262 kcal Electronic energy + Delta-G solvation = -27523.231474 eV Core-core repulsion = 23297.800575 eV Total energy + Delta-G solvation = -4225.430899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.87332 -40.25246 -38.96911 -37.08091 -36.35690 -35.60153 -34.38864 -33.41405 -32.61475 -30.46290 -28.09747 -28.00919 -25.74195 -24.42211 -24.18074 -22.31465 -21.10486 -19.80012 -19.26112 -18.26362 -18.00620 -17.40727 -17.21387 -16.68218 -16.47757 -16.12938 -15.95032 -15.55552 -15.38550 -14.67379 -14.06171 -13.74544 -13.61287 -13.39792 -13.35437 -13.15969 -13.01742 -12.56613 -12.21837 -12.17213 -11.87705 -11.80977 -11.63399 -11.57030 -11.22831 -10.88172 -10.76602 -10.43297 -10.34070 -10.27728 -9.75162 -9.55120 -9.48425 -8.97796 -8.74025 -8.36742 -6.68306 -4.45337 0.23136 0.54335 1.60954 2.35514 2.62303 2.74453 3.12585 3.19422 3.20845 3.36516 3.86186 4.17848 4.22147 4.47769 4.48932 4.74081 4.90000 4.98573 5.03206 5.07793 5.08993 5.26246 5.40776 5.61054 5.65721 5.78889 6.04022 6.10127 6.17700 6.32587 6.35589 6.46647 6.53194 7.10942 7.55151 7.60107 8.08572 8.50393 8.60612 9.29450 10.67088 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.005149 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.951535 B = 5436.163067 C = 6198.548130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.501 3.499 4 O -0.433 6.433 5 C -0.116 4.116 6 C -0.187 4.187 7 C -0.005 4.005 8 O -0.112 6.112 9 C -0.485 4.485 10 S 2.693 3.307 11 O -0.893 6.893 12 O -0.942 6.942 13 N -1.009 6.009 14 C 0.143 3.857 15 C 0.205 3.795 16 O -0.554 6.554 17 C -0.604 4.604 18 H 0.073 0.927 19 C 0.037 3.963 20 N -0.892 5.892 21 Si 1.029 2.971 22 H -0.272 1.272 23 H -0.268 1.268 24 H -0.281 1.281 25 C 0.090 3.910 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.172 0.828 30 H 0.221 0.779 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.354 0.646 34 H 0.273 0.727 35 H 0.088 0.912 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -13.290 -12.071 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.341 3.659 4 O -0.317 6.317 5 C -0.121 4.121 6 C -0.206 4.206 7 C -0.074 4.074 8 O -0.004 6.004 9 C -0.612 4.612 10 S 2.774 3.226 11 O -0.883 6.883 12 O -0.932 6.932 13 N -0.852 5.852 14 C 0.019 3.981 15 C 0.161 3.839 16 O -0.364 6.364 17 C -0.643 4.643 18 H 0.091 0.909 19 C -0.170 4.170 20 N -0.525 5.525 21 Si 0.857 3.143 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.207 1.207 25 C -0.035 4.035 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.190 0.810 30 H 0.237 0.763 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.969 -11.998 -13.018 17.730 hybrid contribution 1.106 -1.832 0.186 2.148 sum 2.075 -13.830 -12.832 18.980 Atomic orbital electron populations 1.23343 0.75407 1.03750 1.03229 1.86503 1.23868 1.31974 1.84783 1.20092 0.87457 0.82644 0.75666 1.91252 1.65505 1.33843 1.41111 1.20582 0.91671 0.93279 1.06551 1.23123 0.90789 0.99970 1.06744 1.24549 1.00693 0.81004 1.01172 1.83998 1.24170 1.23963 1.68312 1.37570 0.86498 1.23881 1.13222 1.03001 0.74220 0.71797 0.73605 1.93781 1.34317 1.84530 1.75654 1.93576 1.59076 1.64144 1.76414 1.60468 1.26069 1.71343 1.27303 1.22999 0.94512 0.94680 0.85929 1.20561 0.90351 0.80037 0.92933 1.86458 1.30652 1.36952 1.82320 1.22290 0.99939 1.52909 0.89182 0.90919 1.25787 1.02000 0.93475 0.95777 1.70787 1.31634 1.41470 1.08609 0.84340 0.76321 0.77908 0.75686 1.19871 1.19429 1.20743 1.24425 0.90485 1.02171 0.86468 0.91318 0.91515 0.87914 0.81045 0.76292 0.89786 0.89116 0.79523 0.91681 0.89365 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.35 -4.64 10.48 -40.67 -0.43 -5.07 16 3 C 0.50 8.06 7.94 34.38 0.27 8.34 16 4 O -0.43 -8.21 12.51 -27.68 -0.35 -8.56 16 5 C -0.12 -1.78 6.31 -103.29 -0.65 -2.43 16 6 C -0.19 -2.08 11.05 -37.44 -0.41 -2.50 16 7 C 0.00 -0.05 12.03 29.30 0.35 0.31 16 8 O -0.11 -1.61 10.52 7.70 0.08 -1.53 16 9 C -0.48 -7.97 7.41 30.11 0.22 -7.75 16 10 S 2.69 51.33 6.21 -107.50 -0.67 50.66 16 11 O -0.89 -18.62 13.90 -67.42 -0.94 -19.56 16 12 O -0.94 -19.40 17.99 -57.25 -1.03 -20.43 16 13 N -1.01 -19.99 4.12 -118.52 -0.49 -20.48 16 14 C 0.14 2.85 8.37 -2.97 -0.02 2.83 16 15 C 0.20 4.67 1.06 -90.84 -0.10 4.58 16 16 O -0.55 -12.91 13.26 -35.23 -0.47 -13.38 16 17 C -0.60 -15.48 9.05 -34.44 -0.31 -15.79 16 18 H 0.07 1.95 8.04 -52.49 -0.42 1.53 16 19 C 0.04 0.98 5.47 -17.82 -0.10 0.89 16 20 N -0.89 -25.28 13.70 55.43 0.76 -24.52 16 21 Si 1.03 22.64 24.78 -169.99 -4.21 18.42 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.35 4.72 56.52 0.27 -5.09 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.09 1.87 7.23 -2.84 -0.02 1.85 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.22 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 33 H 0.35 7.62 4.32 45.56 0.20 7.82 16 34 H 0.27 7.66 8.71 -40.82 -0.36 7.30 16 35 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 36 H 0.08 1.71 6.56 -51.93 -0.34 1.37 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -34.23 325.35 -5.76 -39.99 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.23 Total: 7.80 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 0.30 Total: -8.25 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.27 Total: -45.00 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -3.13 Total: -68.51 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.21 Total: 18.42 kcal Atomic # 16 Polarization: 51.33 SS G_CDS: -0.67 Total: 50.66 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.23 -5.76 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364824567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.281 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds