Wall clock time and date at job start Tue Mar 31 2020 16:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34765 * 116.99815 * 2 1 4 4 O 1.21540 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.47231 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.47062 * 127.20285 * 359.97258 * 5 3 2 7 7 C 1.34159 * 105.94996 * 180.02562 * 6 5 3 8 8 O 1.34221 * 109.14439 * 359.73755 * 7 6 5 9 9 C 1.33627 * 110.92543 * 0.44890 * 8 7 6 10 10 S 1.76199 * 125.81209 * 179.82068 * 9 8 7 11 11 O 1.42096 * 106.40551 * 156.15020 * 10 9 8 12 12 O 1.42104 * 106.39989 * 23.23357 * 10 9 8 13 13 N 1.65600 * 107.21583 * 269.69493 * 10 9 8 14 14 C 1.47577 * 134.49451 * 90.00232 * 13 10 9 15 15 C 1.53947 * 86.11678 * 155.35128 * 14 13 10 16 16 O 1.42893 * 113.74417 * 269.15203 * 15 14 13 17 17 C 1.50710 * 113.73764 * 137.94968 * 15 14 13 18 18 H 1.07994 * 120.00413 * 6.94299 * 17 15 14 19 19 C 1.37873 * 119.99460 * 186.94705 * 17 15 14 20 20 N 1.31516 * 119.99596 * 178.17803 * 19 17 15 21 21 Si 1.86799 * 120.00523 * 358.16911 * 19 17 15 22 22 H 1.48502 * 109.47432 * 270.00789 * 21 19 17 23 23 H 1.48509 * 109.46693 * 30.00560 * 21 19 17 24 24 H 1.48498 * 109.47418 * 149.99892 * 21 19 17 25 25 C 1.47812 * 134.45396 * 269.85881 * 13 10 9 26 26 H 1.08997 * 109.47140 * 300.00337 * 1 2 3 27 27 H 1.09000 * 109.46541 * 60.00569 * 1 2 3 28 28 H 1.09003 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.07995 * 127.02254 * 359.97438 * 6 5 3 30 30 H 1.07993 * 125.42711 * 180.02562 * 7 6 5 31 31 H 1.08996 * 113.77269 * 41.04893 * 14 13 10 32 32 H 1.09002 * 113.76345 * 269.65182 * 14 13 10 33 33 H 0.96694 * 114.00533 * 162.49871 * 16 15 14 34 34 H 0.96997 * 120.00619 * 358.27359 * 20 19 17 35 35 H 1.09000 * 113.76478 * 90.38153 * 25 13 10 36 36 H 1.09001 * 113.83768 * 318.92344 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4834 0.1546 0.0017 7 6 5.7066 0.7057 0.0025 8 8 5.5871 2.0426 -0.0040 9 6 4.3014 2.4068 0.0007 10 16 3.6990 4.0626 -0.0004 11 8 2.3878 4.0123 -0.5458 12 8 4.7366 4.8668 -0.5444 13 7 3.5303 4.5239 1.5811 14 6 4.4142 5.1720 2.5694 15 6 3.1218 5.6439 3.2600 16 8 2.6601 6.9184 2.8078 17 6 3.1614 5.5326 4.7625 18 1 4.0796 5.2565 5.2595 19 6 2.0254 5.7832 5.5024 20 7 2.0504 5.6512 6.8107 21 14 0.4508 6.3104 4.6469 22 1 0.4130 7.7917 4.5482 23 1 0.4073 5.7223 3.2839 24 1 -0.7198 5.8363 5.4280 25 6 2.4325 4.4538 2.5684 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 4.2446 -0.8986 0.0027 30 1 6.6388 0.1605 0.0030 31 1 5.0136 5.9836 2.1571 32 1 4.9984 4.4693 3.1635 33 1 1.7359 7.1017 3.0250 34 1 2.8608 5.3535 7.2528 35 1 2.4334 3.5398 3.1622 36 1 1.4526 4.6932 2.1553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364824567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:55 Heat of formation + Delta-G solvation = -146.260284 kcal Electronic energy + Delta-G solvation = -27524.488662 eV Core-core repulsion = 23297.800575 eV Total energy + Delta-G solvation = -4226.688088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.88762 -41.38851 -40.66776 -38.54193 -37.56443 -37.14315 -36.16364 -34.64264 -34.44976 -31.45329 -29.80551 -28.97161 -27.37259 -26.12313 -25.42031 -23.28213 -22.24112 -21.56955 -20.39622 -19.98721 -19.62969 -18.75508 -18.48731 -17.78950 -17.78313 -17.60210 -17.15796 -16.99086 -16.61944 -16.29194 -15.47889 -15.31276 -15.06478 -14.76181 -14.42116 -14.37623 -14.34926 -14.02318 -13.93828 -13.45871 -13.34904 -13.30040 -13.13285 -12.93905 -12.81854 -12.49777 -12.05222 -11.88377 -11.67926 -11.64957 -11.35029 -11.23820 -10.86133 -10.58882 -10.51445 -10.07623 -8.76904 -6.55220 -1.13723 -0.70513 0.74453 1.29868 1.39499 1.46836 1.47597 1.60319 1.65099 1.85617 2.39357 2.44961 2.85266 3.10133 3.23574 3.28979 3.52666 3.81882 3.87386 3.99251 4.13443 4.27389 4.30364 4.45047 4.50615 4.54473 4.67012 4.67725 4.79518 4.86932 5.03238 5.11723 5.44805 5.46615 5.64680 5.95525 6.44459 6.45845 6.77371 7.27387 8.57549 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.005149 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.951535 B = 5436.163067 C = 6198.548130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.497 3.503 4 O -0.471 6.471 5 C -0.124 4.124 6 C -0.187 4.187 7 C 0.022 3.978 8 O -0.124 6.124 9 C -0.520 4.520 10 S 2.717 3.283 11 O -0.916 6.916 12 O -0.966 6.966 13 N -1.016 6.016 14 C 0.146 3.854 15 C 0.189 3.811 16 O -0.562 6.562 17 C -0.603 4.603 18 H 0.048 0.952 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 1.056 2.944 22 H -0.255 1.255 23 H -0.240 1.240 24 H -0.283 1.283 25 C 0.096 3.904 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.143 0.857 29 H 0.206 0.794 30 H 0.278 0.722 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.095 0.905 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -15.731 -13.688 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.339 3.661 4 O -0.358 6.358 5 C -0.129 4.129 6 C -0.206 4.206 7 C -0.047 4.047 8 O -0.017 6.017 9 C -0.652 4.652 10 S 2.803 3.197 11 O -0.907 6.907 12 O -0.956 6.956 13 N -0.858 5.858 14 C 0.022 3.978 15 C 0.145 3.855 16 O -0.373 6.373 17 C -0.642 4.642 18 H 0.066 0.934 19 C -0.208 4.208 20 N -0.561 5.561 21 Si 0.879 3.121 22 H -0.180 1.180 23 H -0.165 1.165 24 H -0.210 1.210 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.223 0.777 30 H 0.293 0.707 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.212 0.788 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.465 -14.396 -14.634 20.580 hybrid contribution 1.076 -1.297 0.635 1.801 sum 2.541 -15.693 -13.999 21.182 Atomic orbital electron populations 1.23700 0.73634 1.06322 1.02906 1.86503 1.25561 1.30289 1.83985 1.20401 0.87978 0.82922 0.74776 1.91228 1.66395 1.35162 1.42993 1.20912 0.91819 0.94635 1.05531 1.23581 0.89885 1.00600 1.06519 1.25757 1.02638 0.79166 0.97114 1.83986 1.22924 1.26383 1.68374 1.36493 0.87986 1.22808 1.17906 1.01710 0.73409 0.72034 0.72584 1.93755 1.35618 1.85470 1.75820 1.93539 1.59524 1.65959 1.76596 1.60259 1.25627 1.72591 1.27292 1.23010 0.93613 0.95283 0.85915 1.20647 0.92798 0.80497 0.91542 1.86438 1.31393 1.37318 1.82138 1.22411 0.98829 1.51819 0.91151 0.93365 1.27013 1.05137 0.93094 0.95594 1.70905 1.31215 1.44111 1.09840 0.84025 0.72964 0.78940 0.76199 1.18000 1.16527 1.20978 1.24189 0.90623 1.01416 0.86661 0.91906 0.91684 0.83858 0.77653 0.70667 0.89234 0.87385 0.78789 0.93043 0.88679 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.35 -8.36 10.48 -56.76 -0.59 -8.95 16 3 C 0.50 15.43 7.94 70.19 0.56 15.99 16 4 O -0.47 -17.79 12.51 27.72 0.35 -17.44 16 5 C -0.12 -3.55 6.31 -19.00 -0.12 -3.67 16 6 C -0.19 -3.39 11.05 23.66 0.26 -3.12 16 7 C 0.02 0.34 12.03 66.89 0.80 1.15 16 8 O -0.12 -3.22 10.52 4.65 0.05 -3.17 16 9 C -0.52 -16.43 7.41 67.41 0.50 -15.93 16 10 S 2.72 103.05 6.21 -56.49 -0.35 102.70 16 11 O -0.92 -38.50 13.90 -118.20 -1.64 -40.14 16 12 O -0.97 -39.71 17.99 -127.93 -2.30 -42.01 16 13 N -1.02 -39.86 4.12 -532.73 -2.19 -42.05 16 14 C 0.15 5.76 8.37 86.49 0.72 6.49 16 15 C 0.19 8.55 1.06 -10.88 -0.01 8.54 16 16 O -0.56 -25.85 13.26 -148.98 -1.98 -27.83 16 17 C -0.60 -31.39 9.05 25.60 0.23 -31.16 16 18 H 0.05 2.68 8.04 -2.91 -0.02 2.65 16 19 C -0.01 -0.39 5.47 84.65 0.46 0.07 16 20 N -0.93 -53.85 13.70 21.45 0.29 -53.56 16 21 Si 1.06 45.22 24.78 68.60 1.70 46.92 16 22 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 23 H -0.24 -9.14 4.72 99.48 0.47 -8.67 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.10 3.98 7.23 86.44 0.62 4.61 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.28 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.11 3.81 8.09 -2.39 -0.02 3.79 16 33 H 0.36 15.11 4.32 -74.06 -0.32 14.79 16 34 H 0.26 15.22 8.71 -92.71 -0.81 14.41 16 35 H 0.10 3.74 8.09 -2.39 -0.02 3.72 16 36 H 0.08 3.37 6.56 -2.39 -0.02 3.36 16 Total: -1.00 -77.01 325.35 -0.88 -77.90 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.55 Total: 22.99 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.23 Total: -15.35 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.90 Total: -95.61 kcal Atomic # 8 Polarization: -133.43 SS G_CDS: -6.12 Total: -139.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.70 Total: 46.92 kcal Atomic # 16 Polarization: 103.05 SS G_CDS: -0.35 Total: 102.70 kcal Total: -77.01 -0.88 -77.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364824567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.361 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds