Wall clock time and date at job start Tue Mar 31 2020 16:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48498 * 109.46683 * 269.99625 * 3 2 1 5 5 H 1.48501 * 109.47304 * 29.99750 * 3 2 1 6 6 H 1.48505 * 109.46942 * 149.99855 * 3 2 1 7 7 C 1.37879 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99820 * 0.02562 * 7 2 1 10 10 O 1.42907 * 113.25612 * 312.94427 * 9 7 2 11 11 C 1.53513 * 114.16849 * 179.97438 * 9 7 2 12 12 N 1.47477 * 87.92950 * 220.13417 * 11 9 7 13 13 C 1.46905 * 110.99802 * 138.70543 * 12 11 9 14 14 C 1.52997 * 109.47150 * 170.00110 * 13 12 11 15 15 O 1.42898 * 109.47319 * 64.99949 * 14 13 12 16 16 C 1.35897 * 117.00481 * 180.02562 * 15 14 13 17 17 C 1.38724 * 120.03546 * 359.71979 * 16 15 14 18 18 C 1.38271 * 119.95392 * 179.74887 * 17 16 15 19 19 Cl 1.73600 * 119.97789 * 180.29526 * 18 17 16 20 20 C 1.38365 * 120.04019 * 0.55431 * 18 17 16 21 21 C 1.38362 * 120.08729 * 359.69906 * 20 18 17 22 22 Cl 1.73601 * 119.98002 * 180.02562 * 21 20 18 23 23 C 1.38264 * 120.04122 * 0.02562 * 21 20 18 24 24 C 1.47478 * 87.83521 * 27.01263 * 12 11 9 25 25 H 0.97007 * 119.99793 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99774 * 47.05287 * 10 9 7 27 27 H 1.09002 * 113.47362 * 105.36502 * 11 9 7 28 28 H 1.08994 * 113.53168 * 334.91359 * 11 9 7 29 29 H 1.09001 * 109.47063 * 49.99506 * 13 12 11 30 30 H 1.09004 * 109.46681 * 290.00131 * 13 12 11 31 31 H 1.09002 * 109.47153 * 304.99641 * 14 13 12 32 32 H 1.09001 * 109.46832 * 184.99832 * 14 13 12 33 33 H 1.07994 * 120.02305 * 0.02867 * 17 16 15 34 34 H 1.08005 * 119.95791 * 179.72885 * 20 18 17 35 35 H 1.08000 * 120.02397 * 180.02562 * 23 21 20 36 36 H 1.08996 * 113.47855 * 87.76050 * 24 12 11 37 37 H 1.09004 * 113.47481 * 218.22207 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.1938 -2.5403 0.9612 11 6 2.1495 -3.7438 0.0005 12 7 1.2048 -4.3602 -0.9495 13 6 1.9203 -5.0903 -2.0045 14 6 0.9230 -5.9163 -2.8193 15 8 0.0277 -5.0398 -3.5066 16 6 -0.9281 -5.6173 -4.2810 17 6 -0.9988 -6.9991 -4.3818 18 6 -1.9753 -7.5850 -5.1661 19 17 -2.0691 -9.3143 -5.2866 20 6 -2.8742 -6.7938 -5.8592 21 6 -2.8019 -5.4153 -5.7640 22 17 -3.9316 -4.4253 -6.6343 23 6 -1.8305 -4.8259 -4.9763 24 6 0.8516 -2.9993 -1.3947 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3707 -1.7551 0.9588 27 1 2.1889 -4.2509 0.9646 28 1 3.1380 -3.5669 -0.4232 29 1 2.6572 -5.7536 -1.5517 30 1 2.4248 -4.3800 -2.6597 31 1 0.3557 -6.5639 -2.1508 32 1 1.4627 -6.5257 -3.5442 33 1 -0.2946 -7.6168 -3.8445 34 1 -3.6336 -7.2528 -6.4749 35 1 -1.7746 -3.7499 -4.9019 36 1 1.4934 -2.6228 -2.1912 37 1 -0.2091 -2.8755 -1.6132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413983786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:32 Heat of formation + Delta-G solvation = -53.665174 kcal Electronic energy + Delta-G solvation = -23262.634456 eV Core-core repulsion = 19478.627052 eV Total energy + Delta-G solvation = -3784.007404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46036 -40.77761 -38.95242 -37.85738 -37.12238 -36.25421 -34.08731 -32.70101 -31.76647 -30.80751 -28.64091 -26.65196 -26.07868 -24.08994 -23.74907 -22.20690 -20.49700 -19.68889 -19.21905 -17.55569 -17.31863 -17.28622 -17.09732 -16.47152 -16.35986 -15.85050 -15.70125 -15.51237 -15.07191 -14.86353 -14.48797 -13.98411 -13.83654 -13.42931 -13.39417 -13.31061 -13.19085 -12.87610 -12.74989 -12.62393 -12.30468 -12.28309 -12.23315 -12.02524 -11.90821 -11.80955 -11.50914 -11.10760 -10.62784 -10.05076 -9.92935 -9.66011 -9.43928 -8.24216 -6.41966 -0.20577 0.03977 0.63262 1.13100 1.42264 1.44297 1.54489 2.16412 2.30506 2.37504 2.96675 3.20614 3.73004 3.77180 3.87147 3.89688 3.94548 4.03943 4.07749 4.23479 4.26756 4.39295 4.46330 4.56507 4.69289 4.80203 4.85655 4.93884 4.94521 4.95971 5.19570 5.24074 5.41113 5.47383 5.76901 5.97977 6.25432 6.34893 6.64213 7.31193 7.56842 8.80815 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002916 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.489957 B = 9600.925453 C =11021.354058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.585 6.585 11 C 0.013 3.987 12 N -0.473 5.473 13 C 0.012 3.988 14 C 0.068 3.932 15 O -0.318 6.318 16 C 0.154 3.846 17 C -0.198 4.198 18 C 0.014 3.986 19 Cl -0.044 7.044 20 C -0.143 4.143 21 C 0.013 3.987 22 Cl -0.046 7.046 23 C -0.158 4.158 24 C 0.008 3.992 25 H 0.274 0.726 26 H 0.383 0.617 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.055 0.945 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -15.218 -13.434 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.172 3.828 10 O -0.396 6.396 11 C -0.116 4.116 12 N -0.196 5.196 13 C -0.116 4.116 14 C -0.007 4.007 15 O -0.231 6.231 16 C 0.107 3.893 17 C -0.217 4.217 18 C -0.013 4.013 19 Cl -0.015 7.015 20 C -0.163 4.163 21 C -0.014 4.014 22 Cl -0.017 7.017 23 C -0.178 4.178 24 C -0.122 4.122 25 H 0.083 0.917 26 H 0.237 0.763 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.904 -16.050 -13.130 20.938 hybrid contribution 0.485 1.870 -0.462 1.986 sum -2.419 -14.180 -13.592 19.790 Atomic orbital electron populations 1.69386 1.07304 1.28600 1.50866 1.25844 0.95774 1.02866 0.92987 0.85403 0.78619 0.78335 0.78344 1.19916 1.20663 1.19149 1.21872 0.93906 0.91696 1.52022 0.91441 1.19820 0.85558 0.92016 0.85431 1.86001 1.45839 1.47764 1.60036 1.23975 0.95533 0.94755 0.97312 1.68814 1.27051 1.13048 1.10674 1.22902 0.95629 0.99204 0.93907 1.23087 0.90581 0.92261 0.94773 1.86224 1.41577 1.37138 1.58184 1.18748 0.89172 0.90921 0.90492 1.21355 1.02556 0.93431 1.04367 1.20458 0.96621 0.85778 0.98420 1.98392 1.97745 1.08277 1.97051 1.20935 1.01593 0.90712 1.03025 1.20349 0.93079 0.91357 0.96590 1.98393 1.59266 1.69588 1.74461 1.20447 0.95967 1.01359 0.99997 1.24315 0.99126 0.88815 0.99906 0.91665 0.76282 0.90879 0.90040 0.86406 0.93143 0.90766 0.88407 0.82191 0.81946 0.84364 0.92651 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.24 11.02 21.45 0.24 -50.01 16 2 C 0.02 1.31 5.39 84.65 0.46 1.76 16 3 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.56 -29.61 8.70 25.60 0.22 -29.39 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 9 C 0.21 10.82 1.56 -11.20 -0.02 10.80 16 10 O -0.58 -32.59 13.53 -148.98 -2.02 -34.60 16 11 C 0.01 0.54 7.09 83.57 0.59 1.13 16 12 N -0.47 -18.64 6.31 -928.35 -5.86 -24.49 16 13 C 0.01 0.35 5.28 86.30 0.46 0.80 16 14 C 0.07 1.66 5.08 71.98 0.37 2.02 16 15 O -0.32 -9.72 9.47 -92.39 -0.88 -10.60 16 16 C 0.15 4.09 6.69 22.50 0.15 4.24 16 17 C -0.20 -4.26 8.82 22.39 0.20 -4.06 16 18 C 0.01 0.29 6.32 22.31 0.14 0.43 16 19 Cl -0.04 -0.74 28.95 -2.72 -0.08 -0.82 16 20 C -0.14 -2.79 9.61 22.33 0.21 -2.57 16 21 C 0.01 0.30 6.32 22.31 0.14 0.44 16 22 Cl -0.05 -0.96 28.95 -2.72 -0.08 -1.04 16 23 C -0.16 -4.16 9.77 22.39 0.22 -3.95 16 24 C 0.01 0.38 6.50 83.57 0.54 0.92 16 25 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 26 H 0.38 21.99 6.33 -74.06 -0.47 21.52 16 27 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.08 3.05 7.87 -2.39 -0.02 3.03 16 29 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 30 H 0.05 1.50 7.30 -2.39 -0.02 1.48 16 31 H 0.07 1.78 7.67 -2.39 -0.02 1.76 16 32 H 0.10 1.68 7.65 -2.39 -0.02 1.66 16 33 H 0.16 2.83 6.30 -2.91 -0.02 2.81 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.06 2.56 7.38 -2.39 -0.02 2.54 16 37 H 0.04 2.09 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -59.94 343.33 -2.31 -62.25 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.64 Total: 33.20 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.68 Total: -17.41 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -5.62 Total: -74.50 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.89 Total: -45.20 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.16 Total: -1.85 kcal Total: -59.94 -2.31 -62.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413983786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.585 kcal (2) G-P(sol) polarization free energy of solvation -59.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds