Wall clock time and date at job start Tue Mar 31 2020 16:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 117.00169 * 2 1 4 4 C 1.38273 * 121.64294 * 180.26116 * 3 2 1 5 5 C 1.35049 * 114.72524 * 180.19948 * 4 3 2 6 6 S 1.76207 * 127.19926 * 179.84183 * 5 4 3 7 7 O 1.42095 * 106.39918 * 336.16826 * 6 5 4 8 8 O 1.42098 * 106.40181 * 203.25033 * 6 5 4 9 9 N 1.65597 * 107.21624 * 89.70884 * 6 5 4 10 10 C 1.46506 * 120.00079 * 90.00391 * 9 6 5 11 11 C 1.50701 * 109.46970 * 264.72396 * 10 9 6 12 12 H 1.08005 * 119.99694 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00052 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00229 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47207 * 59.99059 * 15 13 11 17 17 H 1.48496 * 109.47197 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46829 * 299.99728 * 15 13 11 19 19 C 1.46499 * 119.99926 * 269.72430 * 9 6 5 20 20 C 1.53001 * 109.47277 * 265.27680 * 19 9 6 21 21 C 1.47193 * 109.47149 * 180.02562 * 20 19 9 22 22 N 8.49455 * 156.09800 * 272.35547 * 2 1 3 23 23 S 1.72030 * 105.60450 * 359.58264 * 5 4 3 24 24 N 1.30348 * 121.64151 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.46842 * 59.99681 * 1 2 3 26 26 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47169 * 300.00206 * 1 2 3 28 28 H 1.07997 * 122.63423 * 0.02679 * 4 3 2 29 29 H 1.08999 * 109.46864 * 24.71745 * 10 9 6 30 30 H 1.08999 * 109.46950 * 144.72128 * 10 9 6 31 31 H 0.97000 * 119.99969 * 180.02562 * 14 13 11 32 32 H 1.08991 * 109.47463 * 25.27752 * 19 9 6 33 33 H 1.09000 * 109.46878 * 145.27981 * 19 9 6 34 34 H 1.09005 * 109.47307 * 300.00055 * 20 19 9 35 35 H 1.08995 * 109.46954 * 59.99844 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3232 -0.0054 5 6 3.8882 2.5915 -0.0004 6 16 5.5722 3.1101 -0.0009 7 8 6.3235 2.0339 0.5436 8 8 5.5880 4.4226 0.5432 9 7 6.0402 3.2539 -1.5829 10 6 5.8740 4.5301 -2.2828 11 6 4.5764 4.5173 -3.0492 12 1 3.9396 3.6456 -3.0183 13 6 4.2029 5.6180 -3.7907 14 7 4.9786 6.6794 -3.8287 15 14 2.5942 5.6025 -4.7401 16 1 1.4645 5.4051 -3.7967 17 1 2.4257 6.8961 -5.4497 18 1 2.6133 4.4941 -5.7282 19 6 6.6262 2.1067 -2.2805 20 6 8.1519 2.1837 -2.1968 21 6 8.7407 1.0314 -2.8983 22 7 9.1950 0.1415 -3.4389 23 16 2.4909 3.5951 -0.0008 24 7 1.3679 2.3244 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.0784 0.4638 -0.0102 29 1 5.8592 5.3433 -1.5571 30 1 6.7034 4.6756 -2.9749 31 1 4.7156 7.4539 -4.3500 32 1 6.2829 1.1835 -1.8139 33 1 6.3185 2.1215 -3.3261 34 1 8.4954 3.1070 -2.6635 35 1 8.4596 2.1690 -1.1512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414209864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:43 Heat of formation + Delta-G solvation = -34.418796 kcal Electronic energy + Delta-G solvation = -24096.755778 eV Core-core repulsion = 20349.963124 eV Total energy + Delta-G solvation = -3746.792655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13016 -37.29401 -36.96355 -36.63993 -35.80280 -35.57603 -32.90786 -31.38933 -30.79371 -28.06514 -27.10144 -24.37985 -23.93617 -22.30630 -21.06671 -19.09802 -18.15268 -17.66356 -17.63386 -16.98593 -16.57329 -16.23920 -16.10281 -15.62280 -14.81486 -14.72663 -14.58988 -13.95476 -13.74697 -13.63479 -13.47162 -12.77193 -12.62979 -12.36712 -12.22411 -12.11047 -11.86316 -11.82490 -11.60267 -11.59303 -11.31994 -11.27564 -11.18758 -11.08415 -10.71623 -10.66415 -10.63039 -10.25926 -10.01338 -9.99829 -8.61264 -8.44951 -8.23467 -6.24182 -4.31575 0.22680 0.69234 1.33381 1.70633 2.31811 2.85181 2.93271 3.10474 3.19864 3.25566 3.26647 3.32202 3.91665 4.21751 4.27471 4.71577 4.81246 5.02217 5.03776 5.11200 5.12015 5.21485 5.34098 5.40890 5.50360 5.58408 5.64919 6.05769 6.09172 6.25022 6.97920 7.02111 7.19681 7.33699 7.68751 7.70985 7.96441 8.72159 9.36388 10.83692 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.008101 B = 0.006557 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.610272 B = 4269.316605 C = 6060.887636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.284 3.716 4 C -0.080 4.080 5 C -0.756 4.756 6 S 2.715 3.285 7 O -0.958 6.958 8 O -0.937 6.937 9 N -0.972 5.972 10 C 0.238 3.762 11 C -0.549 4.549 12 H 0.061 0.939 13 C 0.073 3.927 14 N -0.884 5.884 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.276 1.276 19 C 0.135 3.865 20 C -0.052 4.052 21 C 0.222 3.778 22 N -0.449 5.449 23 S 0.465 5.535 24 N -0.526 5.526 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.173 0.827 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -7.808 7.134 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.071 3.929 4 C -0.121 4.121 5 C -0.965 4.965 6 S 2.796 3.204 7 O -0.948 6.948 8 O -0.927 6.927 9 N -0.812 5.812 10 C 0.117 3.883 11 C -0.589 4.589 12 H 0.080 0.920 13 C -0.131 4.131 14 N -0.522 5.522 15 Si 0.712 3.288 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.201 1.201 19 C 0.006 3.994 20 C -0.094 4.094 21 C -0.096 4.096 22 N -0.126 5.126 23 S 0.619 5.381 24 N -0.369 5.369 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.190 0.810 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.732 -7.401 6.976 10.834 hybrid contribution -1.097 -1.244 -0.877 1.876 sum -4.829 -8.645 6.099 11.630 Atomic orbital electron populations 1.22951 0.76981 1.03355 1.02538 1.86250 1.22743 1.22622 1.88754 1.20257 0.90047 0.84999 0.97580 1.19891 0.92612 0.97297 1.02326 1.37340 1.33706 1.06820 1.18647 1.01710 0.71966 0.73404 0.73309 1.93556 1.67212 1.56788 1.77197 1.93616 1.85752 1.36723 1.76619 1.57453 1.72707 1.20185 1.30821 1.19466 0.98026 0.77438 0.93393 1.21438 1.05606 1.01221 1.30601 0.92046 1.24849 0.96912 0.95200 0.96164 1.69889 1.37129 1.04707 1.40440 0.86757 0.84104 0.77555 0.80362 1.19855 1.20960 1.20133 1.20990 0.89465 0.88134 1.00764 1.19880 0.96676 0.91903 1.00968 1.29049 0.93304 0.94151 0.93139 1.81191 1.09570 1.11555 1.10319 1.84167 0.85162 1.07776 1.60963 1.76167 1.29281 1.02821 1.28651 0.92154 0.88175 0.92278 0.80951 0.92220 0.93142 0.92297 0.90287 0.88386 0.86188 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.47 101.05 1.06 1.43 16 2 O -0.30 -3.99 10.54 -19.57 -0.21 -4.20 16 3 C 0.28 4.33 7.42 -18.17 -0.13 4.20 16 4 C -0.08 -1.17 10.02 -40.70 -0.41 -1.58 16 5 C -0.76 -12.28 6.64 29.60 0.20 -12.09 16 6 S 2.71 45.36 5.82 -107.50 -0.63 44.73 16 7 O -0.96 -15.65 16.86 -57.17 -0.96 -16.62 16 8 O -0.94 -18.12 16.52 -57.17 -0.94 -19.06 16 9 N -0.97 -16.04 2.77 -115.66 -0.32 -16.36 16 10 C 0.24 4.88 5.44 -5.19 -0.03 4.85 16 11 C -0.55 -12.69 9.38 -34.44 -0.32 -13.01 16 12 H 0.06 1.39 7.81 -52.48 -0.41 0.98 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.88 -23.00 13.29 55.43 0.74 -22.26 16 15 Si 0.88 19.57 29.54 -169.99 -5.02 14.55 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.13 1.80 5.29 -4.04 -0.02 1.78 16 20 C -0.05 -0.60 6.02 -29.52 -0.18 -0.78 16 21 C 0.22 2.92 15.43 -20.76 -0.32 2.60 16 22 N -0.45 -7.02 18.54 42.16 0.78 -6.24 16 23 S 0.47 7.85 23.66 -107.50 -2.54 5.31 16 24 N -0.53 -8.55 11.14 28.92 0.32 -8.23 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.06 1.35 6.91 -51.93 -0.36 0.99 16 30 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 33 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 34 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.45 347.17 -7.49 -36.94 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.68 Total: -2.92 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.26 Total: -10.87 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 1.52 Total: -53.10 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.11 Total: -39.88 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -3.17 Total: 50.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.45 -7.49 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414209864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.519 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds