Wall clock time and date at job start Tue Mar 31 2020 16:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 117.00169 * 2 1 4 4 C 1.38273 * 121.64294 * 180.26116 * 3 2 1 5 5 C 1.35049 * 114.72524 * 180.19948 * 4 3 2 6 6 S 1.76207 * 127.19926 * 179.84183 * 5 4 3 7 7 O 1.42095 * 106.39918 * 336.16826 * 6 5 4 8 8 O 1.42098 * 106.40181 * 203.25033 * 6 5 4 9 9 N 1.65597 * 107.21624 * 89.70884 * 6 5 4 10 10 C 1.46506 * 120.00079 * 90.00391 * 9 6 5 11 11 C 1.50701 * 109.46970 * 264.72396 * 10 9 6 12 12 H 1.08005 * 119.99694 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00052 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00229 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47207 * 59.99059 * 15 13 11 17 17 H 1.48496 * 109.47197 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46829 * 299.99728 * 15 13 11 19 19 C 1.46499 * 119.99926 * 269.72430 * 9 6 5 20 20 C 1.53001 * 109.47277 * 265.27680 * 19 9 6 21 21 C 1.47193 * 109.47149 * 180.02562 * 20 19 9 22 22 N 8.49455 * 156.09800 * 272.35547 * 2 1 3 23 23 S 1.72030 * 105.60450 * 359.58264 * 5 4 3 24 24 N 1.30348 * 121.64151 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.46842 * 59.99681 * 1 2 3 26 26 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47169 * 300.00206 * 1 2 3 28 28 H 1.07997 * 122.63423 * 0.02679 * 4 3 2 29 29 H 1.08999 * 109.46864 * 24.71745 * 10 9 6 30 30 H 1.08999 * 109.46950 * 144.72128 * 10 9 6 31 31 H 0.97000 * 119.99969 * 180.02562 * 14 13 11 32 32 H 1.08991 * 109.47463 * 25.27752 * 19 9 6 33 33 H 1.09000 * 109.46878 * 145.27981 * 19 9 6 34 34 H 1.09005 * 109.47307 * 300.00055 * 20 19 9 35 35 H 1.08995 * 109.46954 * 59.99844 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3232 -0.0054 5 6 3.8882 2.5915 -0.0004 6 16 5.5722 3.1101 -0.0009 7 8 6.3235 2.0339 0.5436 8 8 5.5880 4.4226 0.5432 9 7 6.0402 3.2539 -1.5829 10 6 5.8740 4.5301 -2.2828 11 6 4.5764 4.5173 -3.0492 12 1 3.9396 3.6456 -3.0183 13 6 4.2029 5.6180 -3.7907 14 7 4.9786 6.6794 -3.8287 15 14 2.5942 5.6025 -4.7401 16 1 1.4645 5.4051 -3.7967 17 1 2.4257 6.8961 -5.4497 18 1 2.6133 4.4941 -5.7282 19 6 6.6262 2.1067 -2.2805 20 6 8.1519 2.1837 -2.1968 21 6 8.7407 1.0314 -2.8983 22 7 9.1950 0.1415 -3.4389 23 16 2.4909 3.5951 -0.0008 24 7 1.3679 2.3244 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.0784 0.4638 -0.0102 29 1 5.8592 5.3433 -1.5571 30 1 6.7034 4.6756 -2.9749 31 1 4.7156 7.4539 -4.3500 32 1 6.2829 1.1835 -1.8139 33 1 6.3185 2.1215 -3.3261 34 1 8.4954 3.1070 -2.6635 35 1 8.4596 2.1690 -1.1512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414209864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:42 Heat of formation + Delta-G solvation = -56.031531 kcal Electronic energy + Delta-G solvation = -24097.692977 eV Core-core repulsion = 20349.963124 eV Total energy + Delta-G solvation = -3747.729853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26057 -38.52053 -38.26684 -37.78778 -37.07857 -36.95838 -34.64237 -32.62559 -32.06076 -28.99504 -28.72761 -25.52191 -25.32688 -23.77113 -22.25179 -20.36814 -19.44516 -18.89751 -18.80183 -18.26089 -18.20799 -17.37352 -17.27931 -17.01422 -16.32416 -15.86582 -15.73392 -15.27628 -14.96009 -14.73426 -14.66241 -14.34345 -13.93882 -13.62206 -13.48963 -13.28417 -13.18222 -13.06189 -12.95561 -12.89756 -12.83122 -12.66291 -12.44157 -12.34516 -12.27216 -12.06621 -11.89994 -11.74591 -11.56574 -11.25831 -10.48612 -9.90788 -9.48087 -8.11358 -6.20658 -1.01955 -0.62851 0.07575 0.47708 1.13112 1.43946 1.47755 1.51363 1.75709 1.88890 1.94455 2.13628 2.46348 2.61851 3.14086 3.23811 3.42855 3.64724 3.95464 4.17692 4.19487 4.26980 4.31101 4.36391 4.54006 4.64294 4.67255 4.91606 5.07385 5.15699 5.44128 5.52960 5.78538 5.90199 5.90493 6.17213 6.65156 6.90222 7.48911 8.96143 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.008101 B = 0.006557 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.610272 B = 4269.316605 C = 6060.887636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.298 6.298 3 C 0.283 3.717 4 C -0.065 4.065 5 C -0.764 4.764 6 S 2.729 3.271 7 O -0.950 6.950 8 O -0.967 6.967 9 N -0.970 5.970 10 C 0.250 3.750 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.029 3.971 14 N -0.917 5.917 15 Si 0.927 3.073 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.124 3.876 20 C -0.047 4.047 21 C 0.247 3.753 22 N -0.492 5.492 23 S 0.420 5.580 24 N -0.529 5.529 25 H 0.054 0.946 26 H 0.136 0.864 27 H 0.060 0.940 28 H 0.203 0.797 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -9.780 7.349 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.204 6.204 3 C 0.069 3.931 4 C -0.107 4.107 5 C -0.974 4.974 6 S 2.812 3.188 7 O -0.940 6.940 8 O -0.957 6.957 9 N -0.809 5.809 10 C 0.127 3.873 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.172 4.172 14 N -0.556 5.556 15 Si 0.753 3.247 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.003 4.003 20 C -0.089 4.089 21 C -0.070 4.070 22 N -0.170 5.170 23 S 0.574 5.426 24 N -0.372 5.372 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.079 0.921 28 H 0.220 0.780 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.151 0.849 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.092 -9.404 7.193 12.527 hybrid contribution -1.054 -0.778 -0.880 1.578 sum -5.146 -10.183 6.313 13.039 Atomic orbital electron populations 1.23260 0.75191 1.05717 1.02337 1.86276 1.24489 1.21342 1.88295 1.20520 0.90472 0.85446 0.96643 1.20265 0.92900 0.97595 0.99935 1.37210 1.32912 1.07267 1.19984 1.01162 0.71885 0.72787 0.73005 1.93558 1.67225 1.56250 1.77017 1.93583 1.86286 1.38522 1.77324 1.57260 1.73097 1.19870 1.30656 1.19075 0.96959 0.78620 0.92660 1.21770 1.06253 1.00704 1.29329 0.91680 1.25422 0.98979 0.95370 0.97386 1.69974 1.38541 1.05289 1.41830 0.86085 0.81742 0.77370 0.79460 1.19839 1.21260 1.19674 1.21257 0.90575 0.87704 1.00781 1.19928 0.95257 0.91722 1.01947 1.29176 0.92219 0.93552 0.92028 1.81226 1.10984 1.12974 1.11828 1.84296 0.86338 1.09070 1.62931 1.76221 1.28953 1.02893 1.29165 0.92700 0.84601 0.92128 0.78010 0.94472 0.93069 0.92594 0.88098 0.88427 0.84866 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.47 113.37 1.19 1.71 16 2 O -0.30 -7.17 10.54 -92.93 -0.98 -8.15 16 3 C 0.28 8.03 7.42 84.92 0.63 8.66 16 4 C -0.07 -1.76 10.02 21.54 0.22 -1.54 16 5 C -0.76 -23.70 6.64 67.09 0.45 -23.26 16 6 S 2.73 87.21 5.82 -56.49 -0.33 86.88 16 7 O -0.95 -28.56 16.86 -128.00 -2.16 -30.72 16 8 O -0.97 -37.23 16.52 -128.00 -2.11 -39.35 16 9 N -0.97 -30.45 2.77 -519.85 -1.44 -31.88 16 10 C 0.25 10.11 5.44 85.63 0.47 10.57 16 11 C -0.54 -24.65 9.38 25.60 0.24 -24.41 16 12 H 0.07 2.87 7.81 -2.91 -0.02 2.85 16 13 C 0.03 1.44 5.46 84.65 0.46 1.90 16 14 N -0.92 -48.07 13.29 21.45 0.28 -47.78 16 15 Si 0.93 39.82 29.54 68.60 2.03 41.85 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 19 C 0.12 3.00 5.29 86.38 0.46 3.46 16 20 C -0.05 -0.95 6.02 28.79 0.17 -0.77 16 21 C 0.25 5.99 15.43 89.44 1.38 7.37 16 22 N -0.49 -14.66 18.54 20.00 0.37 -14.29 16 23 S 0.42 14.06 23.66 -56.49 -1.34 12.72 16 24 N -0.53 -16.58 11.14 -176.06 -1.96 -18.54 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.20 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.04 1.70 6.91 -2.39 -0.02 1.68 16 30 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.10 2.02 7.61 -2.39 -0.02 2.00 16 33 H 0.10 2.41 8.11 -2.39 -0.02 2.39 16 34 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -62.13 347.17 -0.84 -62.97 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.13 Total: 2.62 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 5.66 Total: -16.32 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -2.74 Total: -112.50 kcal Atomic # 8 Polarization: -72.97 SS G_CDS: -5.25 Total: -78.22 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 101.27 SS G_CDS: -1.66 Total: 99.60 kcal Total: -62.13 -0.84 -62.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414209864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.938 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds