Wall clock time and date at job start Tue Mar 31 2020 17:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36167 * 119.85405 * 2 1 4 4 C 1.35535 * 119.26144 * 180.25263 * 3 2 1 5 5 S 1.76200 * 120.50297 * 179.80080 * 4 3 2 6 6 O 1.42096 * 106.39882 * 356.17555 * 5 4 3 7 7 O 1.42103 * 106.40193 * 223.26027 * 5 4 3 8 8 N 1.65593 * 107.22178 * 109.71972 * 5 4 3 9 9 C 1.47584 * 134.49803 * 89.99723 * 8 5 4 10 10 C 1.53946 * 86.12025 * 155.36171 * 9 8 5 11 11 O 1.42897 * 113.74068 * 269.15867 * 10 9 8 12 12 C 1.50700 * 113.74246 * 137.95222 * 10 9 8 13 13 H 1.07998 * 119.99659 * 4.91778 * 12 10 9 14 14 C 1.37870 * 120.00275 * 184.91298 * 12 10 9 15 15 N 1.31521 * 119.99939 * 13.83955 * 14 12 10 16 16 Si 1.86793 * 120.00241 * 193.83635 * 14 12 10 17 17 H 1.48503 * 109.47305 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47166 * 299.99995 * 16 14 12 19 19 H 1.48499 * 109.46987 * 59.99962 * 16 14 12 20 20 C 1.47585 * 134.49149 * 270.00557 * 8 5 4 21 21 C 1.40737 * 118.99671 * 359.52016 * 4 3 2 22 22 O 1.35162 * 120.16723 * 180.27607 * 21 4 3 23 23 N 1.32423 * 119.67110 * 0.25703 * 21 4 3 24 24 C 1.33267 * 120.72713 * 359.97438 * 23 21 4 25 25 O 1.21981 * 119.47315 * 180.02562 * 24 23 21 26 26 H 1.09002 * 109.46842 * 180.21021 * 1 2 3 27 27 H 1.09000 * 109.47107 * 300.20783 * 1 2 3 28 28 H 1.08999 * 109.46920 * 60.20852 * 1 2 3 29 29 H 1.08000 * 120.36613 * 0.04964 * 3 2 1 30 30 H 1.09003 * 113.76727 * 41.05741 * 9 8 5 31 31 H 1.09000 * 113.86995 * 269.68082 * 9 8 5 32 32 H 0.96698 * 114.00098 * 171.44601 * 11 10 9 33 33 H 0.97007 * 119.99483 * 5.87247 * 15 14 12 34 34 H 1.08994 * 113.77423 * 90.33548 * 20 8 5 35 35 H 1.09010 * 113.76672 * 318.93394 * 20 8 5 36 36 H 0.96699 * 114.00462 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1428 1.1810 0.0000 4 6 3.4981 1.1670 -0.0052 5 16 4.4081 2.6758 -0.0107 6 8 3.4503 3.7216 -0.0992 7 8 5.4618 2.5055 -0.9487 8 7 5.1241 2.8219 1.4753 9 6 6.4185 2.4009 2.0458 10 6 6.2306 3.5511 3.0515 11 8 6.8000 4.7894 2.6222 12 6 6.6085 3.1892 4.4647 13 1 7.0461 2.2249 4.6765 14 6 6.3958 4.0893 5.4872 15 7 5.6269 5.1381 5.2908 16 14 7.1996 3.8191 7.1516 17 1 6.8148 4.9195 8.0716 18 1 6.7466 2.5221 7.7154 19 1 8.6758 3.8006 6.9913 20 6 4.7239 3.4253 2.7613 21 6 4.1676 -0.0710 -0.0002 22 8 5.5186 -0.1125 0.0004 23 7 3.4674 -1.1949 0.0043 24 6 2.1350 -1.1671 0.0047 25 8 1.5128 -2.2162 0.0094 26 1 -0.3633 -1.0277 0.0038 27 1 -0.3633 0.5171 0.8881 28 1 -0.3633 0.5106 -0.8918 29 1 1.6064 2.1183 0.0008 30 1 7.2626 2.5411 1.3705 31 1 6.3985 1.4110 2.5016 32 1 6.5737 5.5425 3.1850 33 1 5.1419 5.2343 4.4562 34 1 4.2043 2.7364 3.4272 35 1 4.2150 4.3838 2.6574 36 1 5.8846 -1.0075 0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414254627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:17 Heat of formation + Delta-G solvation = -104.261600 kcal Electronic energy + Delta-G solvation = -27223.635307 eV Core-core repulsion = 23031.061170 eV Total energy + Delta-G solvation = -4192.574137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12382 -39.13278 -38.86178 -37.30797 -36.83774 -35.64798 -34.97526 -34.33804 -32.39319 -31.89933 -28.03442 -27.71834 -25.60192 -25.31492 -24.41708 -23.81713 -20.19934 -20.03501 -19.22561 -18.67538 -18.17031 -17.72280 -17.12008 -16.73778 -16.44499 -15.67719 -15.58599 -14.98215 -14.83314 -14.76692 -14.39993 -14.12692 -13.95502 -13.77833 -13.46498 -13.23749 -13.14100 -12.52985 -12.19730 -12.03852 -11.87490 -11.86174 -11.80224 -11.38316 -11.12032 -10.99842 -10.90298 -10.55360 -10.51822 -10.23204 -10.20974 -9.39851 -9.31979 -8.90399 -8.73362 -8.11390 -6.69636 -4.49363 0.13566 0.49848 0.95905 1.92462 2.78573 3.07123 3.29179 3.32394 3.34338 3.51310 3.74705 3.87243 3.98914 4.30431 4.33101 4.49609 4.69794 4.71557 4.80329 4.92355 5.11424 5.13548 5.40939 5.70321 5.76918 5.80142 6.08835 6.15062 6.38391 6.43397 6.67255 6.72305 7.21124 7.32598 7.64717 7.70127 8.07376 8.43470 8.84987 9.20606 10.61835 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.004026 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.248869 B = 6952.458290 C = 7387.114297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.526 5.526 3 C 0.315 3.685 4 C -0.837 4.837 5 S 2.718 3.282 6 O -0.962 6.962 7 O -0.940 6.940 8 N -1.017 6.017 9 C 0.148 3.852 10 C 0.223 3.777 11 O -0.565 6.565 12 C -0.616 4.616 13 H 0.065 0.935 14 C 0.037 3.963 15 N -0.897 5.897 16 Si 1.066 2.934 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.094 3.906 21 C 0.521 3.479 22 O -0.429 6.429 23 N -0.614 5.614 24 C 0.661 3.339 25 O -0.525 6.525 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.204 0.796 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.376 0.624 33 H 0.269 0.731 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -6.000 -7.968 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.239 5.239 3 C 0.173 3.827 4 C -0.927 4.927 5 S 2.804 3.196 6 O -0.953 6.953 7 O -0.930 6.930 8 N -0.858 5.858 9 C 0.024 3.976 10 C 0.179 3.821 11 O -0.372 6.372 12 C -0.655 4.655 13 H 0.084 0.916 14 C -0.169 4.169 15 N -0.534 5.534 16 Si 0.893 3.107 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.032 4.032 21 C 0.319 3.681 22 O -0.223 6.223 23 N -0.372 5.372 24 C 0.363 3.637 25 O -0.399 6.399 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.221 0.779 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -7.723 -6.244 -7.912 12.698 hybrid contribution -1.098 -1.062 -0.875 1.760 sum -8.821 -7.306 -8.787 14.436 Atomic orbital electron populations 1.22428 0.75368 1.07228 1.04264 1.46695 1.11094 1.07515 1.58608 1.22343 0.91171 0.91710 0.77480 1.31276 1.05024 1.22387 1.34004 1.01591 0.72835 0.72323 0.72865 1.93532 1.63243 1.52114 1.86402 1.93571 1.54152 1.86064 1.59247 1.60232 1.29190 1.70168 1.26231 1.22911 0.82775 0.98416 0.93528 1.20152 0.87039 0.82726 0.92193 1.86241 1.75813 1.18664 1.56495 1.22270 1.46772 1.05296 0.91172 0.91633 1.25959 0.94588 0.92484 1.03861 1.70939 1.24904 1.29416 1.28104 0.83595 0.76317 0.76113 0.74718 1.20607 1.21235 1.20977 1.24105 1.02875 0.96717 0.79478 1.19304 0.84508 0.87931 0.76405 1.85111 1.13943 1.38025 1.85190 1.69662 1.05974 1.27040 1.34513 1.17495 0.84756 0.83005 0.78469 1.90999 1.66430 1.29397 1.53060 0.87107 0.89150 0.89283 0.77933 0.90286 0.89577 0.77518 0.91858 0.89938 0.90998 0.71698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 10.60 59.85 0.63 0.97 16 2 N -0.53 -5.87 2.99 -129.31 -0.39 -6.26 16 3 C 0.32 3.35 9.97 -16.59 -0.17 3.18 16 4 C -0.84 -11.30 5.92 -39.60 -0.23 -11.53 16 5 S 2.72 44.29 5.95 -107.50 -0.64 43.65 16 6 O -0.96 -16.47 16.98 -57.17 -0.97 -17.44 16 7 O -0.94 -17.61 17.09 -63.30 -1.08 -18.69 16 8 N -1.02 -18.26 4.11 -118.67 -0.49 -18.75 16 9 C 0.15 2.81 8.36 -2.97 -0.02 2.78 16 10 C 0.22 4.91 1.08 -90.84 -0.10 4.82 16 11 O -0.56 -13.22 13.45 -35.23 -0.47 -13.69 16 12 C -0.62 -14.79 8.56 -34.44 -0.29 -15.09 16 13 H 0.07 1.55 7.85 -52.49 -0.41 1.14 16 14 C 0.04 0.91 5.26 -17.82 -0.09 0.82 16 15 N -0.90 -22.83 12.80 55.43 0.71 -22.12 16 16 Si 1.07 22.02 29.93 -169.99 -5.09 16.94 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.29 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 C 0.09 1.83 7.40 -2.97 -0.02 1.81 16 21 C 0.52 7.27 7.86 -16.35 -0.13 7.14 16 22 O -0.43 -5.23 12.28 -29.81 -0.37 -5.59 16 23 N -0.61 -9.39 10.40 -16.72 -0.17 -9.57 16 24 C 0.66 10.11 8.34 -88.44 -0.74 9.37 16 25 O -0.52 -9.30 16.47 4.94 0.08 -9.22 16 26 H 0.11 0.88 6.85 -51.93 -0.36 0.52 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.20 1.41 7.36 -52.49 -0.39 1.03 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 32 H 0.38 8.64 6.95 45.56 0.32 8.96 16 33 H 0.27 6.64 5.52 -40.82 -0.23 6.42 16 34 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 35 H 0.07 1.40 7.80 -51.92 -0.41 0.99 16 36 H 0.42 3.13 8.98 45.56 0.41 3.54 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -34.84 329.07 -7.05 -41.88 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -1.96 Total: 9.63 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.17 Total: 4.27 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.34 Total: -56.69 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -2.81 Total: -64.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.09 Total: 16.94 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.64 Total: 43.65 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.84 -7.05 -41.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414254627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.379 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds