Wall clock time and date at job start Tue Mar 31 2020 16:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38276 * 120.23084 * 152.86545 * 3 2 1 5 5 C 1.41220 * 118.33591 * 180.02562 * 4 3 2 6 6 O 1.21947 * 120.68899 * 179.97438 * 5 4 3 7 7 N 1.34969 * 118.62794 * 359.97438 * 5 4 3 8 8 C 1.46494 * 119.85707 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47272 * 90.00377 * 8 7 5 10 10 C 1.38112 * 120.03018 * 260.00097 * 9 8 7 11 11 C 1.38384 * 120.05576 * 179.97438 * 10 9 8 12 12 Cl 1.73603 * 119.94271 * 179.97438 * 11 10 9 13 13 C 1.38426 * 120.11511 * 359.97438 * 11 10 9 14 14 C 1.38069 * 120.05556 * 359.95554 * 13 11 10 15 15 C 1.38864 * 120.02708 * 79.71722 * 9 8 7 16 16 O 1.35760 * 120.05540 * 0.03157 * 15 9 8 17 17 C 1.34827 * 117.00242 * 174.14363 * 16 15 9 18 18 H 1.08006 * 119.99500 * 5.07551 * 17 16 15 19 19 C 1.38640 * 120.00439 * 185.07307 * 17 16 15 20 20 N 1.31567 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47197 * 60.00319 * 21 19 17 23 23 H 1.48500 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47425 * 300.00114 * 21 19 17 25 25 C 1.34800 * 120.28060 * 0.02562 * 7 5 4 26 26 N 1.30410 * 121.81964 * 359.70048 * 25 7 5 27 27 H 1.08008 * 120.83566 * 0.02717 * 4 3 2 28 28 H 1.09005 * 109.47319 * 209.99862 * 8 7 5 29 29 H 1.09002 * 109.47630 * 330.00265 * 8 7 5 30 30 H 1.07999 * 119.96725 * 359.97309 * 10 9 8 31 31 H 1.08004 * 119.97488 * 179.97438 * 13 11 10 32 32 H 1.08002 * 120.02875 * 180.02562 * 14 13 11 33 33 H 0.96998 * 119.99873 * 180.02562 * 20 19 17 34 34 H 1.07991 * 119.09065 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2638 1.0642 -0.5449 5 6 4.6752 1.0230 -0.5241 6 8 5.3315 1.9375 -0.9932 7 7 5.2828 -0.0495 0.0257 8 6 6.7456 -0.1199 0.0621 9 6 7.2470 0.5039 1.3391 10 6 7.7361 1.7955 1.3318 11 6 8.1961 2.3690 2.5042 12 17 8.8109 3.9925 2.4915 13 6 8.1669 1.6505 3.6870 14 6 7.6776 0.3595 3.6999 15 6 7.2121 -0.2173 2.5252 16 8 6.7270 -1.4853 2.5359 17 6 6.8331 -2.1715 3.6917 18 1 7.2126 -1.6828 4.5769 19 6 6.4550 -3.5043 3.7438 20 7 5.9932 -4.0997 2.6653 21 14 6.6027 -4.4552 5.3448 22 1 5.7672 -3.8044 6.3859 23 1 6.1376 -5.8501 5.1369 24 1 8.0210 -4.4672 5.7845 25 6 4.5494 -1.0561 0.5414 26 7 3.2456 -1.0304 0.5345 27 1 2.7409 1.9054 -0.9756 28 1 7.0604 -1.1626 0.0192 29 1 7.1568 0.4192 -0.7914 30 1 7.7596 2.3583 0.4103 31 1 8.5269 2.1002 4.6006 32 1 7.6546 -0.2006 4.6230 33 1 5.7284 -5.0321 2.7018 34 1 5.0555 -1.9048 0.9770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421411641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:38 Heat of formation + Delta-G solvation = 24.627462 kcal Electronic energy + Delta-G solvation = -25091.481170 eV Core-core repulsion = 21209.761295 eV Total energy + Delta-G solvation = -3881.719875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.051 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.97296 -40.95376 -39.07525 -38.48269 -37.95793 -37.11451 -36.28395 -34.21666 -32.79427 -32.27696 -30.54144 -28.50114 -27.29371 -25.98113 -25.43806 -23.44894 -22.53009 -20.73904 -19.90087 -19.47420 -19.01993 -18.15721 -17.53114 -16.87332 -16.66392 -16.60148 -16.16287 -15.80718 -15.50296 -15.32719 -15.20184 -15.01750 -14.70168 -14.37400 -14.32914 -14.06751 -13.88302 -13.73833 -13.55304 -13.43605 -12.86920 -12.73593 -12.57043 -12.13266 -11.94715 -11.86931 -11.67006 -11.43993 -11.27116 -11.09652 -10.67908 -9.93386 -9.69597 -8.97772 -8.43398 -6.05788 -0.93716 0.23217 0.45616 0.51849 1.20636 1.34661 1.45840 1.48035 1.51780 1.57443 1.64967 2.19892 2.22072 2.59293 2.70115 3.14323 3.20786 3.31513 3.62412 3.74290 3.88581 3.98542 4.08479 4.20199 4.29182 4.45783 4.47578 4.54310 4.83571 5.00672 5.11567 5.16832 5.28863 5.43024 5.44990 5.53876 5.88804 6.03639 6.04803 6.55647 6.63857 7.04526 7.66718 8.75409 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.006777 B = 0.006429 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4130.364428 B = 4354.294766 C = 7712.254939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.288 3.712 3 C 0.246 3.754 4 C -0.221 4.221 5 C 0.519 3.481 6 O -0.548 6.548 7 N -0.503 5.503 8 C 0.150 3.850 9 C -0.187 4.187 10 C -0.034 4.034 11 C -0.122 4.122 12 Cl -0.080 7.080 13 C -0.048 4.048 14 C -0.230 4.230 15 C 0.149 3.851 16 O -0.192 6.192 17 C -0.411 4.411 18 H 0.099 0.901 19 C 0.006 3.994 20 N -0.890 5.890 21 Si 0.996 3.004 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.421 3.579 26 N -0.545 5.545 27 H 0.188 0.812 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.275 0.725 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 6.499 -2.316 7.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.029 4.029 3 C 0.123 3.877 4 C -0.250 4.250 5 C 0.318 3.682 6 O -0.427 6.427 7 N -0.218 5.218 8 C 0.029 3.971 9 C -0.190 4.190 10 C -0.053 4.053 11 C -0.149 4.149 12 Cl -0.052 7.052 13 C -0.067 4.067 14 C -0.250 4.250 15 C 0.096 3.904 16 O -0.096 6.096 17 C -0.486 4.486 18 H 0.117 0.883 19 C -0.196 4.196 20 N -0.525 5.525 21 Si 0.818 3.182 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.188 1.188 25 C 0.137 3.863 26 N -0.269 5.269 27 H 0.205 0.795 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.842 6.308 -2.594 6.872 hybrid contribution 0.924 0.097 0.723 1.178 sum 1.767 6.406 -1.870 6.903 Atomic orbital electron populations 1.81239 1.11832 1.07515 1.07228 1.24727 0.91304 0.93183 0.93719 1.16573 0.86118 0.91074 0.93930 1.23407 0.92316 1.01863 1.07403 1.17253 0.89333 0.82005 0.79629 1.90926 1.67249 1.35974 1.48556 1.47094 1.11176 1.17731 1.45784 1.20784 0.75321 1.04427 0.96546 1.18955 1.11441 0.95455 0.93114 1.20731 0.94368 0.92712 0.97490 1.20536 1.10776 0.87911 0.95663 1.98309 1.86669 1.21280 1.98911 1.20975 0.95743 0.92786 0.97164 1.21248 1.07990 0.96707 0.99007 1.19497 0.91320 0.86046 0.93562 1.83793 1.68656 1.20251 1.36907 1.21559 1.46111 0.93497 0.87463 0.88331 1.26003 0.95621 0.96152 1.01776 1.69961 1.40130 1.13049 1.29402 0.84929 0.79207 0.77262 0.76774 1.19219 1.20221 1.18847 1.25414 0.86578 0.90514 0.83771 1.68447 1.06573 1.26924 1.24906 0.79495 0.86447 0.85953 0.84125 0.83687 0.84429 0.91537 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -12.01 18.54 19.01 0.35 -11.66 16 2 C 0.29 7.98 15.57 88.33 1.38 9.35 16 3 C 0.25 6.80 6.60 40.00 0.26 7.06 16 4 C -0.22 -5.61 9.83 23.01 0.23 -5.38 16 5 C 0.52 15.42 7.45 84.94 0.63 16.05 16 6 O -0.55 -18.29 16.76 -5.14 -0.09 -18.37 16 7 N -0.50 -14.89 2.55 -659.20 -1.68 -16.58 16 8 C 0.15 4.25 5.18 85.63 0.44 4.69 16 9 C -0.19 -6.09 5.48 -19.74 -0.11 -6.20 16 10 C -0.03 -1.03 9.45 22.27 0.21 -0.82 16 11 C -0.12 -3.66 6.32 22.35 0.14 -3.52 16 12 Cl -0.08 -2.13 28.95 -2.72 -0.08 -2.21 16 13 C -0.05 -1.44 9.82 22.27 0.22 -1.23 16 14 C -0.23 -8.02 9.17 22.39 0.21 -7.82 16 15 C 0.15 5.58 6.62 22.58 0.15 5.73 16 16 O -0.19 -8.18 6.98 -22.82 -0.16 -8.34 16 17 C -0.41 -18.51 9.49 67.92 0.64 -17.87 16 18 H 0.10 4.18 5.20 -2.91 -0.02 4.16 16 19 C 0.01 0.29 5.49 84.83 0.47 0.76 16 20 N -0.89 -42.54 13.67 21.61 0.30 -42.25 16 21 Si 1.00 36.25 29.55 68.60 2.03 38.28 16 22 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 23 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 C 0.42 13.34 10.88 180.37 1.96 15.30 16 26 N -0.54 -17.36 10.33 -192.61 -1.99 -19.36 16 27 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 28 H 0.12 3.25 7.73 -2.38 -0.02 3.23 16 29 H 0.12 3.07 7.30 -2.39 -0.02 3.05 16 30 H 0.14 4.05 8.04 -2.91 -0.02 4.02 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 32 H 0.14 4.79 5.64 -2.91 -0.02 4.78 16 33 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 34 H 0.22 7.82 6.57 -2.92 -0.02 7.80 16 Total: -1.00 -51.62 330.90 6.70 -44.92 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.19 Total: 19.46 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.83 Total: 16.11 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.03 Total: -89.84 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.25 Total: -26.72 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -51.62 6.70 -44.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421411641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.544 kcal (2) G-P(sol) polarization free energy of solvation -51.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds