Wall clock time and date at job start Tue Mar 31 2020 16:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39935 * 120.45783 * 261.79914 * 3 2 1 5 5 N 1.31307 * 120.74096 * 179.76954 * 4 3 2 6 6 C 1.32823 * 121.81791 * 0.52061 * 5 4 3 7 7 C 1.48089 * 119.58228 * 179.75158 * 6 5 4 8 8 O 1.21542 * 120.00108 * 179.72508 * 7 6 5 9 9 N 1.34775 * 119.99931 * 359.72972 * 7 6 5 10 10 C 1.40049 * 120.00516 * 179.97438 * 9 7 6 11 11 C 1.40434 * 125.96978 * 359.97081 * 10 9 7 12 12 C 1.35231 * 107.86442 * 179.75437 * 11 10 9 13 13 N 1.34973 * 107.86673 * 0.39828 * 12 11 10 14 14 C 1.46500 * 125.97578 * 179.86734 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.70762 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31237 * 125.98256 * 179.97438 * 10 9 7 24 24 C 1.39493 * 120.84055 * 359.47737 * 6 5 4 25 25 Cl 1.73598 * 120.41639 * 180.27821 * 24 6 5 26 26 C 1.38553 * 119.17227 * 0.25195 * 24 6 5 27 27 H 1.07993 * 119.62679 * 0.02562 * 4 3 2 28 28 H 0.97008 * 119.99925 * 359.97438 * 9 7 6 29 29 H 1.07996 * 126.06872 * 0.02562 * 11 10 9 30 30 H 1.08001 * 126.06779 * 180.23698 * 12 11 10 31 31 H 1.09004 * 109.47078 * 4.71524 * 14 13 12 32 32 H 1.08993 * 109.47364 * 244.71295 * 14 13 12 33 33 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 34 34 H 1.07998 * 120.83169 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2772 0.1730 1.1939 5 7 4.5902 0.1700 1.2010 6 6 5.2961 0.0153 0.0866 7 6 6.7756 0.0253 0.1510 8 8 7.4291 -0.1206 -0.8633 9 7 7.3974 0.1962 1.3345 10 6 8.7965 0.2051 1.3957 11 6 9.6707 0.0477 0.3079 12 6 10.9363 0.1215 0.7788 13 7 10.8711 0.3092 2.1138 14 6 12.0138 0.4411 3.0211 15 6 11.8952 1.7291 3.7945 16 1 11.0527 2.3837 3.6272 17 6 12.8621 2.0717 4.7156 18 7 13.8854 1.2720 4.9232 19 14 12.7148 3.6679 5.6747 20 1 13.8699 3.7987 6.5987 21 1 12.7041 4.8138 4.7301 22 1 11.4530 3.6601 6.4577 23 7 9.5200 0.3620 2.4793 24 6 4.6617 -0.1622 -1.1430 25 17 5.5952 -0.3706 -2.5917 26 6 3.2771 -0.1706 -1.1935 27 1 2.7385 0.3059 2.1204 28 1 6.8758 0.3129 2.1440 29 1 9.3834 -0.1012 -0.7224 30 1 11.8390 0.0416 0.1913 31 1 12.9378 0.4483 2.4430 32 1 12.0258 -0.3995 3.7148 33 1 13.9618 0.4430 4.4253 34 1 2.7583 -0.3055 -2.1311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435242340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:29 Heat of formation + Delta-G solvation = 103.315658 kcal Electronic energy + Delta-G solvation = -23531.351356 eV Core-core repulsion = 19685.336408 eV Total energy + Delta-G solvation = -3846.014947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44126 -41.82690 -40.24475 -37.93981 -37.69439 -36.45267 -35.56684 -34.13055 -32.95869 -32.40964 -31.01090 -28.43662 -27.07458 -25.14687 -24.99303 -23.37378 -22.22121 -21.18850 -20.53063 -19.32082 -19.14542 -18.54553 -17.88031 -16.94155 -16.74209 -16.53247 -16.25463 -15.99888 -15.63731 -15.44963 -15.08564 -14.87694 -14.64806 -14.47010 -14.29408 -14.07449 -13.88791 -13.75030 -13.70855 -13.20778 -13.17805 -12.61379 -12.49906 -12.02490 -11.94111 -11.62078 -11.40987 -11.11154 -10.98859 -10.67813 -10.64064 -10.31864 -9.81962 -9.19814 -8.75458 -6.53484 -1.22783 -0.29112 0.77714 0.81943 1.17483 1.26665 1.44978 1.53019 1.59290 1.76071 1.80680 2.08535 2.20293 2.42036 2.50642 2.56605 2.80071 3.03321 3.25915 3.40136 3.55996 3.85469 3.92239 4.16170 4.27391 4.57176 4.58765 4.71786 4.81033 4.84978 4.94442 5.07311 5.57355 5.80968 5.94266 6.03515 6.18696 6.29051 6.33511 6.43727 6.82615 6.98596 7.21936 8.60760 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.002463 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.894518 B =11364.999620 C =12529.675657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.283 3.717 3 C -0.028 4.028 4 C 0.169 3.831 5 N -0.453 5.453 6 C 0.112 3.888 7 C 0.568 3.432 8 O -0.501 6.501 9 N -0.607 5.607 10 C 0.267 3.733 11 C -0.285 4.285 12 C 0.055 3.945 13 N -0.342 5.342 14 C 0.259 3.741 15 C -0.620 4.620 16 H 0.045 0.955 17 C -0.020 4.020 18 N -0.924 5.924 19 Si 1.119 2.881 20 H -0.276 1.276 21 H -0.271 1.271 22 H -0.275 1.275 23 N -0.343 5.343 24 C -0.044 4.044 25 Cl -0.009 7.009 26 C -0.006 4.006 27 H 0.215 0.785 28 H 0.428 0.572 29 H 0.176 0.824 30 H 0.202 0.798 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.676 -3.574 -13.868 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.033 4.033 3 C -0.034 4.034 4 C 0.006 3.994 5 N -0.164 5.164 6 C -0.027 4.027 7 C 0.353 3.647 8 O -0.372 6.372 9 N -0.256 5.256 10 C 0.013 3.987 11 C -0.316 4.316 12 C -0.093 4.093 13 N -0.124 5.124 14 C 0.140 3.860 15 C -0.658 4.658 16 H 0.064 0.936 17 C -0.219 4.219 18 N -0.560 5.560 19 Si 0.940 3.060 20 H -0.201 1.201 21 H -0.196 1.196 22 H -0.200 1.200 23 N -0.174 5.174 24 C -0.074 4.074 25 Cl 0.021 6.979 26 C -0.034 4.034 27 H 0.232 0.768 28 H 0.267 0.733 29 H 0.194 0.806 30 H 0.219 0.781 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -22.560 -2.505 -11.496 25.444 hybrid contribution -0.545 -1.341 -2.305 2.722 sum -23.105 -3.846 -13.801 27.187 Atomic orbital electron populations 1.81395 1.12740 1.08569 1.07417 1.24923 0.91542 0.93334 0.93529 1.16953 0.85392 1.05600 0.95414 1.23632 0.87830 0.89412 0.98510 1.67842 1.09422 1.11827 1.27273 1.20675 0.92863 0.99596 0.89522 1.18060 0.86783 0.77303 0.82581 1.90827 1.65495 1.46993 1.33929 1.42286 1.01715 1.69673 1.11913 1.19349 0.85132 1.01211 0.93017 1.21772 0.89853 1.19092 1.00879 1.23213 1.01142 1.00338 0.84586 1.48590 1.03937 1.53175 1.06693 1.19429 0.80794 0.97352 0.88461 1.22280 1.11336 1.06152 1.26038 0.93624 1.27254 0.91568 1.06430 0.96668 1.70948 1.30708 1.12396 1.41913 0.82890 0.76647 0.71030 0.75453 1.20094 1.19634 1.20048 1.77301 0.88521 1.29664 1.21904 1.21763 0.93319 1.02830 0.89527 1.98476 1.72228 1.94554 1.32692 1.21876 0.90114 0.91258 1.00142 0.76808 0.73304 0.80646 0.78073 0.92729 0.96528 0.92959 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.43 18.54 19.00 0.35 -6.08 16 2 C 0.28 2.60 15.36 88.33 1.36 3.95 16 3 C -0.03 -0.18 5.75 -21.22 -0.12 -0.30 16 4 C 0.17 1.25 10.91 85.18 0.93 2.18 16 5 N -0.45 -6.57 9.51 -183.83 -1.75 -8.32 16 6 C 0.11 2.03 6.75 41.91 0.28 2.31 16 7 C 0.57 14.81 7.77 86.86 0.67 15.48 16 8 O -0.50 -14.73 11.04 -3.85 -0.04 -14.77 16 9 N -0.61 -18.14 5.43 -309.92 -1.68 -19.82 16 10 C 0.27 10.31 8.10 133.36 1.08 11.40 16 11 C -0.29 -10.47 9.60 22.11 0.21 -10.25 16 12 C 0.06 2.09 11.43 83.52 0.95 3.04 16 13 N -0.34 -15.75 3.67 -351.84 -1.29 -17.04 16 14 C 0.26 13.14 5.57 85.64 0.48 13.62 16 15 C -0.62 -34.95 9.24 25.60 0.24 -34.71 16 16 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 17 C -0.02 -1.09 5.46 84.65 0.46 -0.62 16 18 N -0.92 -53.64 13.65 21.45 0.29 -53.35 16 19 Si 1.12 49.35 29.90 68.60 2.05 51.40 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 N -0.34 -15.76 12.42 -54.49 -0.68 -16.44 16 24 C -0.04 -0.61 6.36 22.65 0.14 -0.47 16 25 Cl -0.01 -0.16 26.00 -2.72 -0.07 -0.23 16 26 C -0.01 -0.04 9.70 22.74 0.22 0.18 16 27 H 0.22 0.18 8.06 -2.91 -0.02 0.15 16 28 H 0.43 11.32 8.14 -92.70 -0.75 10.57 16 29 H 0.18 5.96 5.91 -2.91 -0.02 5.94 16 30 H 0.20 5.91 8.06 -2.91 -0.02 5.88 16 31 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 32 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 33 H 0.26 14.96 7.22 -92.71 -0.67 14.29 16 34 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -72.84 332.70 4.64 -68.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.55 Total: 10.64 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.91 Total: 5.81 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.75 Total: -121.05 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.04 Total: -14.77 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -72.84 4.64 -68.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435242340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.517 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds