Wall clock time and date at job start Tue Mar 31 2020 17:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.28614 * 2 1 4 4 C 1.47430 * 126.41621 * 359.94707 * 3 2 1 5 5 O 1.21603 * 120.00002 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99655 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99884 * 179.97438 * 6 4 3 8 8 C 1.53788 * 113.61233 * 254.13536 * 7 6 4 9 9 C 1.53956 * 87.01855 * 220.04468 * 8 7 6 10 10 Cl 1.80297 * 113.53906 * 270.81179 * 9 8 7 11 11 Cl 1.80303 * 113.66341 * 139.93037 * 9 8 7 12 12 C 1.53780 * 87.11042 * 25.36511 * 9 8 7 13 13 C 1.41290 * 107.16601 * 179.97438 * 3 2 1 14 14 N 1.30445 * 108.02653 * 0.02562 * 13 3 2 15 15 N 1.34258 * 126.29478 * 179.68828 * 2 1 3 16 16 C 1.46501 * 125.75274 * 0.02562 * 15 2 1 17 17 C 1.50695 * 109.47553 * 89.99560 * 16 15 2 18 18 H 1.08001 * 119.99592 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99960 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47476 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47066 * 120.00048 * 21 19 17 24 24 H 1.48509 * 109.47117 * 239.99504 * 21 19 17 25 25 H 1.08999 * 109.46995 * 90.02312 * 1 2 3 26 26 H 1.08994 * 109.46790 * 210.01999 * 1 2 3 27 27 H 1.08997 * 109.47305 * 330.02440 * 1 2 3 28 28 H 0.97004 * 120.00646 * 359.97438 * 6 4 3 29 29 H 1.08995 * 112.85239 * 25.33212 * 7 6 4 30 30 H 1.08994 * 113.61149 * 334.56823 * 8 7 6 31 31 H 1.08998 * 113.61173 * 105.47362 * 8 7 6 32 32 H 1.09007 * 113.61260 * 220.08744 * 12 9 8 33 33 H 1.09002 * 113.69342 * 89.19377 * 12 9 8 34 34 H 1.08003 * 125.98636 * 179.97438 * 13 3 2 35 35 H 1.08997 * 109.46699 * 210.00167 * 16 15 2 36 36 H 1.09012 * 109.46589 * 329.99353 * 16 15 2 37 37 H 0.97001 * 119.99834 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8857 2.5204 -0.0011 5 8 0.6994 2.7878 -0.0026 6 7 2.7998 3.5108 -0.0004 7 6 2.3642 4.9095 -0.0021 8 6 2.5509 5.6112 -1.3578 9 6 3.0049 6.8495 -0.5635 10 17 1.6511 7.9508 -0.1109 11 17 4.3967 7.7184 -1.3110 12 6 3.4142 5.8824 0.5599 13 6 3.6590 0.6500 0.0006 14 7 3.6341 -0.6542 0.0004 15 7 2.3018 -1.0821 0.0059 16 6 1.8502 -2.4757 0.0129 17 6 1.6958 -2.9610 -1.4054 18 1 1.9119 -2.2975 -2.2296 19 6 1.2775 -4.2517 -1.6507 20 7 1.0138 -5.0595 -0.6469 21 14 1.0868 -4.8534 -3.4088 22 1 1.4435 -3.7597 -4.3479 23 1 1.9855 -6.0136 -3.6352 24 1 -0.3210 -5.2652 -3.6411 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5134 28 1 3.7461 3.2975 0.0011 29 1 1.3710 5.0441 0.4261 30 1 3.3381 5.1732 -1.9713 31 1 1.6197 5.7595 -1.9045 32 1 3.1790 6.2492 1.5591 33 1 4.4379 5.5180 0.4729 34 1 4.5449 1.2678 0.0004 35 1 2.5847 -3.0930 0.5303 36 1 0.8914 -2.5443 0.5270 37 1 0.7199 -5.9676 -0.8196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456233556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:05 Heat of formation + Delta-G solvation = 30.668786 kcal Electronic energy + Delta-G solvation = -22984.440286 eV Core-core repulsion = 19236.382628 eV Total energy + Delta-G solvation = -3748.057658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90724 -39.98852 -38.15721 -36.30708 -36.20947 -34.00263 -33.22596 -32.04899 -31.13549 -27.63569 -26.74409 -26.53988 -24.86677 -23.37138 -22.00709 -20.45721 -19.96770 -18.97881 -17.23866 -17.13950 -16.79942 -16.14341 -15.23076 -15.11842 -14.71372 -14.49671 -14.41105 -13.82592 -13.79719 -13.30049 -13.23567 -12.96136 -12.63599 -12.48069 -12.14748 -11.88042 -11.83745 -11.72589 -11.51920 -11.48014 -11.19893 -11.13861 -11.00473 -10.93579 -10.66765 -10.40739 -10.24885 -9.95201 -9.51522 -9.16559 -8.74624 -8.64680 -7.99254 -6.36935 -4.44830 0.91099 1.72615 2.08985 2.72399 3.05881 3.14801 3.23094 3.28257 3.40737 3.45780 3.61024 3.76341 4.21400 4.22728 4.67188 4.93245 4.95658 5.02675 5.04451 5.18335 5.20133 5.39375 5.45109 5.64349 5.72620 5.87549 6.08060 6.32642 6.44241 6.51874 6.74501 6.86764 7.09993 7.52162 7.57564 7.72817 7.74096 8.31317 8.47177 8.60903 9.22403 10.71353 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024855 B = 0.002283 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.263943 B =12259.204798 C =12378.640006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.335 4.335 4 C 0.607 3.393 5 O -0.551 6.551 6 N -0.723 5.723 7 C 0.136 3.864 8 C -0.145 4.145 9 C 0.065 3.935 10 Cl -0.111 7.111 11 Cl -0.132 7.132 12 C -0.138 4.138 13 C 0.058 3.942 14 N -0.294 5.294 15 N -0.313 5.313 16 C 0.250 3.750 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.401 0.599 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.176 0.824 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 22.395 2.328 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.030 3.970 3 C -0.351 4.351 4 C 0.399 3.601 5 O -0.429 6.429 6 N -0.374 5.374 7 C 0.030 3.970 8 C -0.184 4.184 9 C 0.013 3.987 10 Cl -0.084 7.084 11 Cl -0.106 7.106 12 C -0.177 4.177 13 C -0.129 4.129 14 N -0.114 5.114 15 N -0.090 5.090 16 C 0.133 3.867 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.236 0.764 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.014 21.253 2.370 21.759 hybrid contribution 0.105 0.410 -1.027 1.110 sum 4.120 21.663 1.343 22.092 Atomic orbital electron populations 1.20583 0.86761 1.03842 1.03985 1.21494 0.94988 0.86525 0.93955 1.19616 0.93177 0.92298 1.29994 1.17352 0.84976 0.83918 0.73903 1.90706 1.16644 1.84358 1.51228 1.45577 1.09941 1.04264 1.77640 1.22174 0.99554 0.80560 0.94738 1.24321 1.04386 0.90639 0.99039 1.27875 0.83808 0.87638 0.99351 1.98777 1.48475 1.68109 1.93026 1.98770 1.46458 1.81082 1.84243 1.24106 1.01861 0.93316 0.98380 1.23719 0.96269 0.92666 1.00273 1.77149 0.98646 1.12261 1.23367 1.49393 1.02472 1.08352 1.48759 1.19877 0.96446 0.70847 0.99512 1.21275 1.47404 0.98144 0.90999 0.91605 1.24925 0.94420 0.96024 0.98302 1.69920 1.44498 1.07297 1.30951 0.86269 0.77992 0.78876 0.83392 1.19517 1.20550 1.20527 0.89773 0.90813 0.88797 0.76365 0.85413 0.86726 0.88269 0.88068 0.86606 0.80753 0.92474 0.92504 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.01 0.34 -1.28 16 2 C 0.17 3.27 7.01 -81.60 -0.57 2.70 16 3 C -0.34 -5.70 6.13 -105.06 -0.64 -6.34 16 4 C 0.61 9.04 7.81 -12.52 -0.10 8.94 16 5 O -0.55 -9.60 14.46 5.27 0.08 -9.52 16 6 N -0.72 -7.34 5.35 -54.09 -0.29 -7.63 16 7 C 0.14 1.17 4.02 -67.11 -0.27 0.90 16 8 C -0.14 -1.13 7.23 -25.82 -0.19 -1.31 16 9 C 0.07 0.48 2.08 -25.83 -0.05 0.43 16 10 Cl -0.11 -0.94 28.63 -51.86 -1.48 -2.43 16 11 Cl -0.13 -1.07 28.84 -51.86 -1.50 -2.56 16 12 C -0.14 -0.86 7.16 -25.92 -0.19 -1.05 16 13 C 0.06 0.94 11.50 -16.98 -0.20 0.74 16 14 N -0.29 -6.07 12.50 30.86 0.39 -5.69 16 15 N -0.31 -6.84 3.56 -57.77 -0.21 -7.05 16 16 C 0.25 6.09 5.97 -5.20 -0.03 6.06 16 17 C -0.54 -14.28 9.39 -34.44 -0.32 -14.61 16 18 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 21 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.07 1.25 7.04 -51.93 -0.37 0.89 16 27 H 0.09 1.54 6.50 -51.93 -0.34 1.20 16 28 H 0.40 3.07 7.67 -40.82 -0.31 2.75 16 29 H 0.13 1.31 7.50 -51.93 -0.39 0.92 16 30 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.12 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.18 1.92 7.50 -52.48 -0.39 1.52 16 35 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.37 7.01 -51.92 -0.36 1.01 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -30.16 348.96 -8.59 -38.75 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.24 Total: 2.02 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.31 Total: -3.14 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.63 Total: -43.88 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -2.98 Total: -4.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.16 -8.59 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456233556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.417 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds