Wall clock time and date at job start Tue Mar 31 2020 17:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.28614 * 2 1 4 4 C 1.47430 * 126.41621 * 359.94707 * 3 2 1 5 5 O 1.21603 * 120.00002 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99655 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99884 * 179.97438 * 6 4 3 8 8 C 1.53788 * 113.61233 * 254.13536 * 7 6 4 9 9 C 1.53956 * 87.01855 * 220.04468 * 8 7 6 10 10 Cl 1.80297 * 113.53906 * 270.81179 * 9 8 7 11 11 Cl 1.80303 * 113.66341 * 139.93037 * 9 8 7 12 12 C 1.53780 * 87.11042 * 25.36511 * 9 8 7 13 13 C 1.41290 * 107.16601 * 179.97438 * 3 2 1 14 14 N 1.30445 * 108.02653 * 0.02562 * 13 3 2 15 15 N 1.34258 * 126.29478 * 179.68828 * 2 1 3 16 16 C 1.46501 * 125.75274 * 0.02562 * 15 2 1 17 17 C 1.50695 * 109.47553 * 89.99560 * 16 15 2 18 18 H 1.08001 * 119.99592 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99960 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47476 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47066 * 120.00048 * 21 19 17 24 24 H 1.48509 * 109.47117 * 239.99504 * 21 19 17 25 25 H 1.08999 * 109.46995 * 90.02312 * 1 2 3 26 26 H 1.08994 * 109.46790 * 210.01999 * 1 2 3 27 27 H 1.08997 * 109.47305 * 330.02440 * 1 2 3 28 28 H 0.97004 * 120.00646 * 359.97438 * 6 4 3 29 29 H 1.08995 * 112.85239 * 25.33212 * 7 6 4 30 30 H 1.08994 * 113.61149 * 334.56823 * 8 7 6 31 31 H 1.08998 * 113.61173 * 105.47362 * 8 7 6 32 32 H 1.09007 * 113.61260 * 220.08744 * 12 9 8 33 33 H 1.09002 * 113.69342 * 89.19377 * 12 9 8 34 34 H 1.08003 * 125.98636 * 179.97438 * 13 3 2 35 35 H 1.08997 * 109.46699 * 210.00167 * 16 15 2 36 36 H 1.09012 * 109.46589 * 329.99353 * 16 15 2 37 37 H 0.97001 * 119.99834 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8857 2.5204 -0.0011 5 8 0.6994 2.7878 -0.0026 6 7 2.7998 3.5108 -0.0004 7 6 2.3642 4.9095 -0.0021 8 6 2.5509 5.6112 -1.3578 9 6 3.0049 6.8495 -0.5635 10 17 1.6511 7.9508 -0.1109 11 17 4.3967 7.7184 -1.3110 12 6 3.4142 5.8824 0.5599 13 6 3.6590 0.6500 0.0006 14 7 3.6341 -0.6542 0.0004 15 7 2.3018 -1.0821 0.0059 16 6 1.8502 -2.4757 0.0129 17 6 1.6958 -2.9610 -1.4054 18 1 1.9119 -2.2975 -2.2296 19 6 1.2775 -4.2517 -1.6507 20 7 1.0138 -5.0595 -0.6469 21 14 1.0868 -4.8534 -3.4088 22 1 1.4435 -3.7597 -4.3479 23 1 1.9855 -6.0136 -3.6352 24 1 -0.3210 -5.2652 -3.6411 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5134 28 1 3.7461 3.2975 0.0011 29 1 1.3710 5.0441 0.4261 30 1 3.3381 5.1732 -1.9713 31 1 1.6197 5.7595 -1.9045 32 1 3.1790 6.2492 1.5591 33 1 4.4379 5.5180 0.4729 34 1 4.5449 1.2678 0.0004 35 1 2.5847 -3.0930 0.5303 36 1 0.8914 -2.5443 0.5270 37 1 0.7199 -5.9676 -0.8196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456233556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:04 Heat of formation + Delta-G solvation = 12.336119 kcal Electronic energy + Delta-G solvation = -22985.235250 eV Core-core repulsion = 19236.382628 eV Total energy + Delta-G solvation = -3748.852622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.30413 -40.86462 -39.17541 -36.93244 -36.89534 -35.81228 -34.39965 -33.58395 -32.67093 -29.27990 -28.25201 -27.11059 -25.94120 -25.03924 -23.21744 -21.33586 -21.17846 -20.28049 -18.86148 -18.40345 -17.94679 -16.99398 -16.66100 -16.41724 -16.15247 -15.76234 -15.54160 -15.07339 -14.75840 -14.46870 -14.23352 -14.05275 -13.83868 -13.80081 -13.63559 -13.51736 -13.07073 -12.95399 -12.70814 -12.53215 -12.40178 -12.32321 -12.11203 -11.83137 -11.82862 -11.72510 -11.63744 -11.27169 -10.79297 -10.75956 -10.25068 -10.11447 -9.42919 -8.37862 -6.54006 0.30307 0.69475 1.11684 1.35035 1.36484 1.40088 1.50079 1.67719 2.31400 2.36889 2.51897 2.86527 2.94492 2.97151 3.52797 3.76135 3.79235 4.04784 4.17452 4.26438 4.31447 4.50853 4.53983 4.64318 4.68336 4.79255 4.80908 4.89047 4.95514 5.11385 5.20630 5.49156 5.51993 5.71423 5.75387 6.05690 6.55521 6.62569 6.87852 7.17293 7.36461 8.70207 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024855 B = 0.002283 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.263943 B =12259.204798 C =12378.640006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.610 3.390 5 O -0.579 6.579 6 N -0.700 5.700 7 C 0.130 3.870 8 C -0.142 4.142 9 C 0.068 3.932 10 Cl -0.123 7.123 11 Cl -0.134 7.134 12 C -0.123 4.123 13 C 0.081 3.919 14 N -0.338 5.338 15 N -0.339 5.339 16 C 0.267 3.733 17 C -0.554 4.554 18 H 0.052 0.948 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.269 1.269 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.417 0.583 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.230 0.770 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 24.118 1.720 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.009 3.991 3 C -0.346 4.346 4 C 0.400 3.600 5 O -0.460 6.460 6 N -0.352 5.352 7 C 0.024 3.976 8 C -0.181 4.181 9 C 0.016 3.984 10 Cl -0.096 7.096 11 Cl -0.107 7.107 12 C -0.161 4.161 13 C -0.106 4.106 14 N -0.158 5.158 15 N -0.116 5.116 16 C 0.148 3.852 17 C -0.592 4.592 18 H 0.070 0.930 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.194 1.194 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.255 0.745 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.157 0.843 34 H 0.246 0.754 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.307 23.019 1.770 23.689 hybrid contribution -0.236 0.030 -0.813 0.847 sum 5.071 23.049 0.957 23.620 Atomic orbital electron populations 1.20554 0.86033 1.04022 1.03887 1.21984 0.95896 0.86851 0.94374 1.19927 0.93246 0.92967 1.28458 1.17107 0.85086 0.83792 0.74058 1.90700 1.18020 1.84605 1.52672 1.45341 1.10058 1.04090 1.75713 1.22230 0.99827 0.79722 0.95859 1.24316 1.04513 0.90666 0.98629 1.27865 0.83425 0.87304 0.99839 1.98782 1.49180 1.68566 1.93064 1.98775 1.46392 1.81187 1.84351 1.24109 1.02161 0.91469 0.98347 1.24558 0.97673 0.91543 0.96776 1.77101 0.98256 1.14639 1.25764 1.49099 1.03468 1.07727 1.51338 1.19358 0.95272 0.72474 0.98100 1.21419 1.47728 0.98425 0.91603 0.92990 1.25724 0.93871 0.96035 1.02169 1.70001 1.44943 1.07733 1.32838 0.85304 0.78404 0.78204 0.78573 1.19643 1.19899 1.19444 0.89964 0.91241 0.87875 0.74482 0.87024 0.85565 0.89043 0.87073 0.84293 0.75356 0.95069 0.93216 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.57 71.24 0.68 -2.40 16 2 C 0.14 5.67 7.01 42.14 0.30 5.97 16 3 C -0.33 -10.75 6.13 -20.15 -0.12 -10.88 16 4 C 0.61 16.96 7.81 86.67 0.68 17.64 16 5 O -0.58 -19.60 14.46 -4.04 -0.06 -19.66 16 6 N -0.70 -12.03 5.35 -443.30 -2.37 -14.40 16 7 C 0.13 1.90 4.02 45.52 0.18 2.08 16 8 C -0.14 -1.88 7.23 31.18 0.23 -1.65 16 9 C 0.07 0.84 2.08 31.18 0.06 0.90 16 10 Cl -0.12 -1.91 28.63 -2.72 -0.08 -1.98 16 11 Cl -0.13 -1.83 28.84 -2.72 -0.08 -1.91 16 12 C -0.12 -1.12 7.16 31.12 0.22 -0.89 16 13 C 0.08 2.44 11.50 85.65 0.99 3.42 16 14 N -0.34 -13.82 12.50 -56.27 -0.70 -14.52 16 15 N -0.34 -15.16 3.56 -336.68 -1.20 -16.36 16 16 C 0.27 13.52 5.97 85.63 0.51 14.04 16 17 C -0.55 -30.07 9.39 25.60 0.24 -29.83 16 18 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 19 C 0.02 1.25 5.46 84.65 0.46 1.71 16 20 N -0.92 -50.82 13.29 21.45 0.28 -50.53 16 21 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.07 2.46 7.04 -2.39 -0.02 2.44 16 27 H 0.10 3.41 6.50 -2.39 -0.02 3.40 16 28 H 0.42 4.52 7.67 -92.71 -0.71 3.81 16 29 H 0.11 2.11 7.50 -2.39 -0.02 2.09 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16 33 H 0.14 0.68 8.11 -2.39 -0.02 0.66 16 34 H 0.23 3.93 7.50 -2.91 -0.02 3.91 16 35 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 2.53 7.01 -2.38 -0.02 2.52 16 37 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -66.81 348.96 2.66 -64.15 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.41 Total: 10.89 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.43 Total: 0.11 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.99 Total: -95.81 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.66 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -3.74 SS G_CDS: -0.16 Total: -3.89 kcal Total: -66.81 2.66 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456233556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.486 kcal (2) G-P(sol) polarization free energy of solvation -66.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds