Wall clock time and date at job start Tue Mar 31 2020 16:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99526 * 3 2 1 5 5 H 1.48492 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46944 * 120.00042 * 3 2 1 7 7 C 1.37879 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00161 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47247 * 299.99754 * 9 7 2 11 11 N 1.46500 * 109.46939 * 179.97438 * 9 7 2 12 12 C 1.34781 * 119.99732 * 155.00269 * 11 9 7 13 13 O 1.21625 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.47334 * 120.00050 * 180.02562 * 12 11 9 15 15 N 1.35221 * 126.56137 * 0.02562 * 14 12 11 16 16 C 1.29992 * 108.84509 * 179.97438 * 15 14 12 17 17 O 1.33992 * 109.70283 * 359.97438 * 16 15 14 18 18 C 1.34783 * 108.10416 * 359.77121 * 17 16 15 19 19 C 1.47758 * 126.76829 * 180.24529 * 18 17 16 20 20 C 1.42495 * 126.96658 * 0.13534 * 19 18 17 21 21 C 1.35177 * 103.92520 * 179.97438 * 20 19 18 22 22 O 1.34069 * 106.74220 * 359.97438 * 21 20 19 23 23 N 1.20902 * 111.90212 * 359.75096 * 22 21 20 24 24 C 1.53006 * 109.46866 * 59.99586 * 9 7 2 25 25 F 1.39900 * 109.46764 * 179.97438 * 24 9 7 26 26 F 1.39897 * 109.47129 * 299.99833 * 24 9 7 27 27 F 1.39903 * 109.46814 * 60.00326 * 24 9 7 28 28 H 0.97006 * 120.00358 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00364 * 334.99781 * 11 9 7 30 30 H 1.07998 * 125.15091 * 180.02562 * 16 15 14 31 31 H 1.08000 * 128.03160 * 359.93485 * 20 19 18 32 32 H 1.08004 * 126.62514 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5568 0.8903 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 0.4938 13 8 0.7162 -4.9703 0.9393 14 6 2.7944 -5.9320 0.4943 15 7 4.0664 -5.9043 0.0363 16 6 4.5988 -7.0783 0.2042 17 8 3.7065 -7.9022 0.7702 18 6 2.5664 -7.2116 0.9697 19 6 1.3180 -7.7210 1.5739 20 6 1.0782 -9.0373 2.0642 21 6 -0.1977 -8.9917 2.5084 22 8 -0.6399 -7.7458 2.2853 23 7 0.2072 -7.0514 1.7736 24 6 0.3718 -2.5804 -1.2490 25 9 -0.3273 -3.7922 -1.2493 26 9 -0.5374 -1.5171 -1.2495 27 9 1.1765 -2.5066 -2.3910 28 1 -0.4851 0.8401 -0.0004 29 1 3.0969 -3.4866 -0.3545 30 1 5.6079 -7.3484 -0.0701 31 1 1.7578 -9.8766 2.0772 32 1 -0.7531 -9.8020 2.9571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462892505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:40 Heat of formation + Delta-G solvation = -60.134613 kcal Electronic energy + Delta-G solvation = -28948.882302 eV Core-core repulsion = 24080.920963 eV Total energy + Delta-G solvation = -4867.961339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.29344 -45.94477 -45.56119 -44.97868 -43.42821 -38.75659 -35.02010 -34.79039 -34.30480 -32.48407 -31.85196 -30.06650 -28.42635 -24.89188 -24.42301 -23.93353 -22.61162 -21.93890 -20.90142 -19.87687 -18.76255 -17.89827 -17.67035 -16.87057 -16.81662 -16.76004 -16.54504 -16.22239 -15.75109 -15.38818 -14.84911 -14.58683 -14.15715 -13.74894 -13.62222 -13.24747 -13.05447 -12.86025 -12.45299 -12.34063 -12.22328 -11.92437 -11.76742 -11.50047 -11.37208 -11.16623 -11.10105 -10.87217 -10.81389 -10.72000 -10.36425 -9.82837 -9.63353 -9.38630 -8.71960 -8.66583 -8.17997 -6.19359 -4.42977 0.57659 1.52496 2.08883 2.11143 2.48593 3.20076 3.23759 3.28034 3.29953 3.59838 3.78192 3.95476 4.13484 4.24299 4.38232 4.62221 4.93121 4.97326 4.99436 5.11126 5.18873 5.44186 5.64803 5.74798 5.86093 5.92347 6.02612 6.27521 6.95638 7.17588 7.34835 7.53534 7.66978 8.23245 8.36435 8.53983 8.87892 9.24239 10.72332 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.004156 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.816169 B = 6736.146849 C = 7456.903790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.247 3.753 10 H 0.087 0.913 11 N -0.693 5.693 12 C 0.575 3.425 13 O -0.491 6.491 14 C -0.013 4.013 15 N -0.457 5.457 16 C 0.183 3.817 17 O -0.190 6.190 18 C 0.084 3.916 19 C 0.052 3.948 20 C -0.213 4.213 21 C -0.069 4.069 22 O 0.129 5.871 23 N -0.253 5.253 24 C 0.417 3.583 25 F -0.217 7.217 26 F -0.136 7.136 27 F -0.209 7.209 28 H 0.269 0.731 29 H 0.406 0.594 30 H 0.260 0.740 31 H 0.175 0.825 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -17.648 3.333 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.141 3.859 10 H 0.105 0.895 11 N -0.343 5.343 12 C 0.357 3.643 13 O -0.364 6.364 14 C -0.137 4.137 15 N -0.185 5.185 16 C -0.044 4.044 17 O -0.075 6.075 18 C 0.027 3.973 19 C -0.103 4.103 20 C -0.235 4.235 21 C -0.150 4.150 22 O 0.047 5.953 23 N 0.053 4.947 24 C 0.361 3.639 25 F -0.199 7.199 26 F -0.117 7.117 27 F -0.191 7.191 28 H 0.079 0.921 29 H 0.241 0.759 30 H 0.276 0.724 31 H 0.192 0.808 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.421 -15.815 3.102 16.712 hybrid contribution 1.161 -0.643 -0.263 1.353 sum 5.583 -16.458 2.840 17.610 Atomic orbital electron populations 1.70393 1.05843 1.27451 1.43644 1.25076 0.95156 1.00078 0.94044 0.86258 0.79320 0.81251 0.78939 1.19796 1.20878 1.19782 1.20843 0.93832 0.88003 1.56122 0.90420 1.19773 0.88646 0.85584 0.91871 0.89520 1.45882 1.17619 1.09694 1.61144 1.16855 0.85793 0.81687 0.79943 1.90969 1.18592 1.81771 1.45103 1.22270 0.92704 0.94831 1.03929 1.70518 1.06734 1.22482 1.18788 1.28135 0.96551 0.83356 0.96392 1.84346 1.20088 1.41270 1.61797 1.19678 0.85245 0.89738 1.02601 1.20179 0.91716 0.92086 1.06344 1.22747 0.97881 0.97695 1.05154 1.25958 0.95650 0.89870 1.03473 1.85077 1.35527 1.18535 1.56116 1.75220 0.97344 1.14277 1.07856 1.23114 0.80839 0.72832 0.87125 1.93074 1.81488 1.48374 1.96973 1.93404 1.68363 1.53749 1.96203 1.92992 1.74396 1.96182 1.55507 0.92077 0.75940 0.72406 0.80776 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.51 9.50 55.43 0.53 -22.99 16 2 C 0.07 1.74 5.20 -17.82 -0.09 1.65 16 3 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.55 -14.61 8.46 -34.44 -0.29 -14.90 16 8 H 0.08 1.96 7.74 -52.48 -0.41 1.56 16 9 C 0.25 6.43 2.21 -69.08 -0.15 6.28 16 10 H 0.09 2.49 7.58 -51.93 -0.39 2.09 16 11 N -0.69 -15.79 4.98 -56.03 -0.28 -16.07 16 12 C 0.57 12.79 7.34 -12.56 -0.09 12.69 16 13 O -0.49 -12.07 11.98 5.26 0.06 -12.01 16 14 C -0.01 -0.23 7.05 -82.62 -0.58 -0.82 16 15 N -0.46 -7.04 11.00 -11.16 -0.12 -7.16 16 16 C 0.18 1.94 13.16 51.98 0.68 2.62 16 17 O -0.19 -2.32 10.75 5.21 0.06 -2.27 16 18 C 0.08 1.35 7.37 -35.63 -0.26 1.09 16 19 C 0.05 0.82 7.12 -82.60 -0.59 0.23 16 20 C -0.21 -2.23 11.15 -39.03 -0.44 -2.67 16 21 C -0.07 -0.62 12.27 29.64 0.36 -0.26 16 22 O 0.13 1.80 11.18 17.10 0.19 1.99 16 23 N -0.25 -4.54 8.71 33.27 0.29 -4.25 16 24 C 0.42 11.17 2.81 37.16 0.10 11.28 16 25 F -0.22 -5.79 15.67 2.25 0.04 -5.75 16 26 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 27 F -0.21 -5.43 16.94 2.25 0.04 -5.40 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.41 8.52 8.27 -40.82 -0.34 8.19 16 30 H 0.26 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.22 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -34.66 304.70 -2.49 -37.15 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -1.54 Total: 3.25 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: -1.35 Total: 17.19 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.41 Total: -50.47 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.31 Total: -12.29 kcal Atomic # 9 Polarization: -15.09 SS G_CDS: 0.10 Total: -14.99 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.66 -2.49 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462892505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.989 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds