Wall clock time and date at job start Tue Mar 31 2020 16:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48498 * 109.46680 * 239.99526 * 3 2 1 5 5 H 1.48492 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46944 * 120.00042 * 3 2 1 7 7 C 1.37879 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00161 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47247 * 299.99754 * 9 7 2 11 11 N 1.46500 * 109.46939 * 179.97438 * 9 7 2 12 12 C 1.34781 * 119.99732 * 155.00269 * 11 9 7 13 13 O 1.21625 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.47334 * 120.00050 * 180.02562 * 12 11 9 15 15 N 1.35221 * 126.56137 * 0.02562 * 14 12 11 16 16 C 1.29992 * 108.84509 * 179.97438 * 15 14 12 17 17 O 1.33992 * 109.70283 * 359.97438 * 16 15 14 18 18 C 1.34783 * 108.10416 * 359.77121 * 17 16 15 19 19 C 1.47758 * 126.76829 * 180.24529 * 18 17 16 20 20 C 1.42495 * 126.96658 * 0.13534 * 19 18 17 21 21 C 1.35177 * 103.92520 * 179.97438 * 20 19 18 22 22 O 1.34069 * 106.74220 * 359.97438 * 21 20 19 23 23 N 1.20902 * 111.90212 * 359.75096 * 22 21 20 24 24 C 1.53006 * 109.46866 * 59.99586 * 9 7 2 25 25 F 1.39900 * 109.46764 * 179.97438 * 24 9 7 26 26 F 1.39897 * 109.47129 * 299.99833 * 24 9 7 27 27 F 1.39903 * 109.46814 * 60.00326 * 24 9 7 28 28 H 0.97006 * 120.00358 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00364 * 334.99781 * 11 9 7 30 30 H 1.07998 * 125.15091 * 180.02562 * 16 15 14 31 31 H 1.08000 * 128.03160 * 359.93485 * 20 19 18 32 32 H 1.08004 * 126.62514 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5568 0.8903 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 0.4938 13 8 0.7162 -4.9703 0.9393 14 6 2.7944 -5.9320 0.4943 15 7 4.0664 -5.9043 0.0363 16 6 4.5988 -7.0783 0.2042 17 8 3.7065 -7.9022 0.7702 18 6 2.5664 -7.2116 0.9697 19 6 1.3180 -7.7210 1.5739 20 6 1.0782 -9.0373 2.0642 21 6 -0.1977 -8.9917 2.5084 22 8 -0.6399 -7.7458 2.2853 23 7 0.2072 -7.0514 1.7736 24 6 0.3718 -2.5804 -1.2490 25 9 -0.3273 -3.7922 -1.2493 26 9 -0.5374 -1.5171 -1.2495 27 9 1.1765 -2.5066 -2.3910 28 1 -0.4851 0.8401 -0.0004 29 1 3.0969 -3.4866 -0.3545 30 1 5.6079 -7.3484 -0.0701 31 1 1.7578 -9.8766 2.0772 32 1 -0.7531 -9.8020 2.9571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462892505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:39 Heat of formation + Delta-G solvation = -88.200948 kcal Electronic energy + Delta-G solvation = -28950.099350 eV Core-core repulsion = 24080.920963 eV Total energy + Delta-G solvation = -4869.178387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.47857 -48.11578 -47.78034 -46.01244 -44.49641 -40.48083 -36.60866 -36.13294 -35.44996 -34.44530 -32.79203 -31.33917 -30.26341 -26.71290 -26.07037 -24.97953 -23.79037 -23.34467 -22.35581 -21.41453 -20.06331 -19.25799 -18.90715 -18.77341 -18.73928 -18.54871 -17.85811 -17.73671 -17.31158 -16.89217 -16.48071 -15.94797 -15.54913 -15.40060 -15.02162 -14.98464 -14.60637 -14.53189 -14.42335 -14.33501 -14.08599 -14.07317 -13.91058 -13.11784 -12.85023 -12.65778 -12.58066 -12.41968 -12.22684 -12.15883 -11.93266 -11.63890 -11.10360 -10.71013 -10.67585 -10.17351 -9.78280 -8.24090 -6.55896 -0.58553 0.74231 0.99506 1.06678 1.40484 1.44379 1.47916 1.56220 2.00944 2.19824 2.36838 2.48241 2.50058 2.90357 3.01703 3.11531 3.35665 3.62071 3.73908 3.81215 4.00875 4.10488 4.18806 4.35732 4.47991 4.73443 4.82400 5.05971 5.06646 5.32208 5.48732 5.60026 6.24119 6.47442 6.64101 7.09585 7.20846 7.34122 8.68836 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.004156 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.816169 B = 6736.146849 C = 7456.903790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.016 3.984 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.255 3.745 10 H 0.050 0.950 11 N -0.693 5.693 12 C 0.567 3.433 13 O -0.522 6.522 14 C -0.053 4.053 15 N -0.493 5.493 16 C 0.223 3.777 17 O -0.174 6.174 18 C 0.090 3.910 19 C 0.019 3.981 20 C -0.208 4.208 21 C -0.046 4.046 22 O 0.118 5.882 23 N -0.318 5.318 24 C 0.415 3.585 25 F -0.220 7.220 26 F -0.147 7.147 27 F -0.204 7.204 28 H 0.270 0.730 29 H 0.413 0.587 30 H 0.325 0.675 31 H 0.211 0.789 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -19.733 3.642 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.189 4.189 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.601 4.601 8 H 0.106 0.894 9 C 0.149 3.851 10 H 0.068 0.932 11 N -0.344 5.344 12 C 0.353 3.647 13 O -0.397 6.397 14 C -0.175 4.175 15 N -0.221 5.221 16 C -0.004 4.004 17 O -0.059 6.059 18 C 0.032 3.968 19 C -0.136 4.136 20 C -0.230 4.230 21 C -0.125 4.125 22 O 0.037 5.963 23 N -0.014 5.014 24 C 0.359 3.641 25 F -0.201 7.201 26 F -0.128 7.128 27 F -0.186 7.186 28 H 0.080 0.920 29 H 0.249 0.751 30 H 0.339 0.661 31 H 0.228 0.772 32 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 6.712 -17.910 3.403 19.427 hybrid contribution 0.468 -0.208 -0.326 0.607 sum 7.180 -18.118 3.077 19.730 Atomic orbital electron populations 1.70520 1.07475 1.28386 1.44322 1.26023 0.95967 1.03703 0.93239 0.85168 0.78018 0.76501 0.79385 1.19027 1.20530 1.18704 1.21150 0.94387 0.88306 1.56274 0.89397 1.19371 0.88731 0.87069 0.89967 0.93247 1.45747 1.17308 1.09454 1.61883 1.17395 0.86307 0.82227 0.78800 1.90948 1.20258 1.82423 1.46098 1.21702 0.93765 0.94549 1.07534 1.70450 1.05701 1.25141 1.20799 1.29589 0.97361 0.81399 0.92072 1.84405 1.19078 1.40727 1.61728 1.19800 0.86366 0.89178 1.01425 1.20653 0.91283 0.94312 1.07307 1.23187 0.98988 0.96414 1.04362 1.27058 0.95489 0.88819 1.01138 1.84991 1.35102 1.20497 1.55707 1.75234 0.98973 1.16767 1.10424 1.23257 0.80782 0.72420 0.87640 1.93063 1.81605 1.48468 1.97014 1.93378 1.68839 1.54316 1.96300 1.92984 1.74194 1.96156 1.55246 0.91977 0.75078 0.66089 0.77214 0.70790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.15 9.50 21.45 0.20 -49.95 16 2 C 0.02 0.87 5.20 84.66 0.44 1.31 16 3 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.56 -30.56 8.46 25.60 0.22 -30.34 16 8 H 0.09 4.46 7.74 -2.91 -0.02 4.44 16 9 C 0.26 13.95 2.21 44.25 0.10 14.05 16 10 H 0.05 3.06 7.58 -2.39 -0.02 3.04 16 11 N -0.69 -33.01 4.98 -449.43 -2.24 -35.25 16 12 C 0.57 26.60 7.34 86.64 0.64 27.24 16 13 O -0.52 -27.42 11.98 -4.11 -0.05 -27.47 16 14 C -0.05 -1.99 7.05 41.05 0.29 -1.70 16 15 N -0.49 -14.64 11.00 -304.13 -3.35 -17.98 16 16 C 0.22 3.93 13.16 130.51 1.72 5.65 16 17 O -0.17 -3.77 10.75 -4.27 -0.05 -3.81 16 18 C 0.09 2.86 7.37 24.83 0.18 3.05 16 19 C 0.02 0.58 7.12 42.81 0.30 0.88 16 20 C -0.21 -3.83 11.15 22.63 0.25 -3.58 16 21 C -0.05 -0.70 12.27 67.11 0.82 0.13 16 22 O 0.12 3.31 11.18 71.38 0.80 4.11 16 23 N -0.32 -11.90 8.71 -49.49 -0.43 -12.34 16 24 C 0.42 23.14 2.81 71.98 0.20 23.34 16 25 F -0.22 -12.27 15.67 44.97 0.70 -11.57 16 26 F -0.15 -8.70 12.91 44.97 0.58 -8.12 16 27 F -0.20 -10.85 16.94 44.97 0.76 -10.09 16 28 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 29 H 0.41 17.95 8.27 -92.71 -0.77 17.19 16 30 H 0.32 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.28 0.51 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -82.35 304.70 4.60 -77.75 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.47 Total: 10.49 kcal Atomic # 6 Polarization: 34.86 SS G_CDS: 5.16 Total: 40.03 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -5.81 Total: -115.52 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.70 Total: -27.18 kcal Atomic # 9 Polarization: -31.82 SS G_CDS: 2.05 Total: -29.77 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -82.35 4.60 -77.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462892505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.450 kcal (2) G-P(sol) polarization free energy of solvation -82.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds