Wall clock time and date at job start Tue Mar 31 2020 16:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47049 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00003 * 3 2 1 6 6 H 1.48496 * 109.47148 * 149.99850 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99695 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99855 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47252 * 60.00531 * 9 7 2 11 11 N 1.46504 * 109.46700 * 180.02562 * 9 7 2 12 12 C 1.34777 * 119.99854 * 204.99839 * 11 9 7 13 13 O 1.21663 * 119.99998 * 0.02562 * 12 11 9 14 14 C 1.47030 * 120.00266 * 180.27711 * 12 11 9 15 15 N 1.31531 * 126.23398 * 359.41774 * 14 12 11 16 16 N 1.28668 * 109.40519 * 179.88396 * 15 14 12 17 17 C 1.32264 * 109.29279 * 0.38283 * 16 15 14 18 18 C 1.46640 * 126.31021 * 179.72772 * 17 16 15 19 19 C 1.36579 * 125.98494 * 0.05028 * 18 17 16 20 20 C 1.40501 * 106.70873 * 179.97438 * 19 18 17 21 21 C 1.35040 * 107.10995 * 359.97438 * 20 19 18 22 22 O 1.34115 * 108.76716 * 359.73845 * 21 20 19 23 23 O 1.34679 * 107.38077 * 359.76825 * 17 16 15 24 24 C 1.52995 * 109.47460 * 299.99893 * 9 7 2 25 25 F 1.39897 * 109.47639 * 300.00348 * 24 9 7 26 26 F 1.39904 * 109.46711 * 60.00489 * 24 9 7 27 27 F 1.39898 * 109.47309 * 179.97438 * 24 9 7 28 28 H 0.96999 * 119.99893 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00410 * 25.00565 * 11 9 7 30 30 H 1.08000 * 126.64749 * 0.02562 * 19 18 17 31 31 H 1.07992 * 126.44798 * 179.97438 * 20 19 18 32 32 H 1.07993 * 125.62150 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7159 -4.9703 -0.9395 14 6 2.7903 -5.9316 -0.4883 15 7 4.0280 -5.8964 -0.0444 16 7 4.5683 -7.0547 -0.1924 17 6 3.6937 -7.8772 -0.7473 18 6 3.9206 -9.2855 -1.0872 19 6 5.0769 -9.9836 -0.8850 20 6 4.8487 -11.2880 -1.3547 21 6 3.5801 -11.3279 -1.8160 22 8 3.0216 -10.1203 -1.6475 23 8 2.5567 -7.1826 -0.9437 24 6 0.3719 -2.5805 1.2490 25 9 1.1765 -2.5067 2.3910 26 9 -0.5373 -1.5172 1.2495 27 9 -0.3281 -3.7918 1.2487 28 1 -0.4850 0.8400 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 5.9896 -9.6064 -0.4479 31 1 5.5548 -12.1050 -1.3481 32 1 3.0938 -12.1913 -2.2452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471959897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:31 Heat of formation + Delta-G solvation = -99.591237 kcal Electronic energy + Delta-G solvation = -27924.414910 eV Core-core repulsion = 23054.742604 eV Total energy + Delta-G solvation = -4869.672307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.48693 -46.14056 -45.74030 -44.32504 -43.05401 -39.26677 -36.54146 -34.98082 -33.81503 -32.95966 -32.45728 -29.91309 -28.38059 -25.32299 -24.64847 -24.38093 -22.31376 -21.84104 -21.48375 -20.54120 -19.06403 -18.42022 -17.77965 -17.13739 -16.91491 -16.78489 -16.56843 -16.43558 -16.04458 -15.68410 -15.09587 -14.66532 -14.23522 -13.68542 -13.45693 -13.39845 -13.14498 -13.05984 -12.73441 -12.69062 -12.52962 -12.40419 -12.28242 -12.12815 -11.94762 -11.64567 -11.31857 -11.02925 -10.91528 -10.82224 -10.54896 -10.37663 -10.08592 -9.84209 -8.88984 -8.78231 -8.58695 -6.34613 -4.59808 0.00280 1.14473 1.48831 1.84424 2.10822 2.32819 3.08167 3.15621 3.21359 3.23933 3.29768 4.02914 4.07926 4.16404 4.39814 4.41140 4.52047 4.65299 4.82285 4.85072 5.14673 5.27962 5.29819 5.43731 5.64119 5.70746 5.85692 6.01269 6.43038 6.60391 6.75641 7.23600 7.51456 7.71079 7.94692 8.20126 8.44911 9.08559 10.57150 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.002901 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.409250 B = 9648.396512 C =10161.695439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.067 3.933 3 Si 0.920 3.080 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.246 3.754 10 H 0.094 0.906 11 N -0.671 5.671 12 C 0.601 3.399 13 O -0.497 6.497 14 C 0.151 3.849 15 N -0.230 5.230 16 N -0.251 5.251 17 C 0.248 3.752 18 C 0.031 3.969 19 C -0.112 4.112 20 C -0.219 4.219 21 C 0.003 3.997 22 O -0.159 6.159 23 O -0.182 6.182 24 C 0.417 3.583 25 F -0.205 7.205 26 F -0.132 7.132 27 F -0.218 7.218 28 H 0.271 0.729 29 H 0.414 0.586 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 -17.502 -2.316 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.746 3.254 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.142 3.858 10 H 0.111 0.889 11 N -0.322 5.322 12 C 0.380 3.620 13 O -0.369 6.369 14 C -0.061 4.061 15 N -0.084 5.084 16 N -0.104 5.104 17 C 0.042 3.958 18 C -0.020 4.020 19 C -0.133 4.133 20 C -0.238 4.238 21 C -0.067 4.067 22 O -0.053 6.053 23 O -0.058 6.058 24 C 0.360 3.640 25 F -0.187 7.187 26 F -0.113 7.113 27 F -0.200 7.200 28 H 0.081 0.919 29 H 0.251 0.749 30 H 0.187 0.813 31 H 0.181 0.819 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.713 -16.888 -2.196 18.696 hybrid contribution -0.309 0.172 -0.015 0.353 sum 7.405 -16.716 -2.211 18.416 Atomic orbital electron populations 1.70383 1.05919 1.27753 1.43035 1.25081 0.95209 1.00239 0.93756 0.86128 0.79640 0.81163 0.78493 1.20072 1.20706 1.19284 1.20865 0.94104 0.87492 1.56720 0.89850 1.20036 0.88394 0.84828 0.92559 0.88876 1.45838 1.18550 1.08398 1.59464 1.15958 0.84463 0.80682 0.80944 1.90945 1.18668 1.81706 1.45557 1.27650 0.94919 0.85061 0.98451 1.74883 1.04142 1.13748 1.15629 1.75180 1.24086 0.95853 1.15323 1.23887 0.81142 0.92231 0.98495 1.17764 0.90111 0.85264 1.08857 1.21959 0.97712 0.92923 1.00705 1.21880 0.97721 0.98304 1.05919 1.24527 0.94155 0.86252 1.01787 1.84159 1.39101 1.19953 1.62105 1.85078 1.36978 1.21249 1.62496 1.23061 0.80876 0.73004 0.87026 1.93015 1.74252 1.96153 1.55246 1.93426 1.68170 1.53556 1.96166 1.93080 1.81469 1.48445 1.96970 0.91850 0.74932 0.81318 0.81888 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.13 9.50 55.43 0.53 -21.60 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.56 -13.64 8.47 -34.44 -0.29 -13.94 16 8 H 0.08 1.94 7.74 -52.49 -0.41 1.53 16 9 C 0.25 5.88 2.21 -69.08 -0.15 5.73 16 10 H 0.09 2.42 7.58 -51.93 -0.39 2.03 16 11 N -0.67 -13.75 4.98 -56.13 -0.28 -14.02 16 12 C 0.60 12.27 7.33 -12.70 -0.09 12.17 16 13 O -0.50 -11.53 15.68 0.78 0.01 -11.52 16 14 C 0.15 2.72 8.19 -14.12 -0.12 2.60 16 15 N -0.23 -3.92 11.92 31.99 0.38 -3.54 16 16 N -0.25 -3.93 12.27 31.93 0.39 -3.54 16 17 C 0.25 3.69 8.26 -13.98 -0.12 3.57 16 18 C 0.03 0.37 7.23 -36.79 -0.27 0.10 16 19 C -0.11 -0.98 10.83 -39.33 -0.43 -1.41 16 20 C -0.22 -1.38 10.88 -39.87 -0.43 -1.81 16 21 C 0.00 0.02 12.08 29.60 0.36 0.38 16 22 O -0.16 -1.72 10.67 4.64 0.05 -1.67 16 23 O -0.18 -3.14 10.92 -2.22 -0.02 -3.16 16 24 C 0.42 10.34 2.81 37.16 0.10 10.45 16 25 F -0.20 -4.93 16.94 2.25 0.04 -4.89 16 26 F -0.13 -3.52 12.91 2.25 0.03 -3.50 16 27 F -0.22 -5.35 15.67 2.25 0.04 -5.32 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.41 7.61 8.23 -40.82 -0.34 7.28 16 30 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -29.87 311.84 -2.22 -32.09 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -1.54 Total: 2.03 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: -1.52 Total: 19.43 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 1.02 Total: -42.70 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.04 Total: -16.35 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.87 -2.22 -32.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471959897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.498 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds