Wall clock time and date at job start Tue Mar 31 2020 16:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47049 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00003 * 3 2 1 6 6 H 1.48496 * 109.47148 * 149.99850 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99695 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99855 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47252 * 60.00531 * 9 7 2 11 11 N 1.46504 * 109.46700 * 180.02562 * 9 7 2 12 12 C 1.34777 * 119.99854 * 204.99839 * 11 9 7 13 13 O 1.21663 * 119.99998 * 0.02562 * 12 11 9 14 14 C 1.47030 * 120.00266 * 180.27711 * 12 11 9 15 15 N 1.31531 * 126.23398 * 359.41774 * 14 12 11 16 16 N 1.28668 * 109.40519 * 179.88396 * 15 14 12 17 17 C 1.32264 * 109.29279 * 0.38283 * 16 15 14 18 18 C 1.46640 * 126.31021 * 179.72772 * 17 16 15 19 19 C 1.36579 * 125.98494 * 0.05028 * 18 17 16 20 20 C 1.40501 * 106.70873 * 179.97438 * 19 18 17 21 21 C 1.35040 * 107.10995 * 359.97438 * 20 19 18 22 22 O 1.34115 * 108.76716 * 359.73845 * 21 20 19 23 23 O 1.34679 * 107.38077 * 359.76825 * 17 16 15 24 24 C 1.52995 * 109.47460 * 299.99893 * 9 7 2 25 25 F 1.39897 * 109.47639 * 300.00348 * 24 9 7 26 26 F 1.39904 * 109.46711 * 60.00489 * 24 9 7 27 27 F 1.39898 * 109.47309 * 179.97438 * 24 9 7 28 28 H 0.96999 * 119.99893 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00410 * 25.00565 * 11 9 7 30 30 H 1.08000 * 126.64749 * 0.02562 * 19 18 17 31 31 H 1.07992 * 126.44798 * 179.97438 * 20 19 18 32 32 H 1.07993 * 125.62150 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7159 -4.9703 -0.9395 14 6 2.7903 -5.9316 -0.4883 15 7 4.0280 -5.8964 -0.0444 16 7 4.5683 -7.0547 -0.1924 17 6 3.6937 -7.8772 -0.7473 18 6 3.9206 -9.2855 -1.0872 19 6 5.0769 -9.9836 -0.8850 20 6 4.8487 -11.2880 -1.3547 21 6 3.5801 -11.3279 -1.8160 22 8 3.0216 -10.1203 -1.6475 23 8 2.5567 -7.1826 -0.9437 24 6 0.3719 -2.5805 1.2490 25 9 1.1765 -2.5067 2.3910 26 9 -0.5373 -1.5172 1.2495 27 9 -0.3281 -3.7918 1.2487 28 1 -0.4850 0.8400 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 5.9896 -9.6064 -0.4479 31 1 5.5548 -12.1050 -1.3481 32 1 3.0938 -12.1913 -2.2452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471959897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:30 Heat of formation + Delta-G solvation = -123.994654 kcal Electronic energy + Delta-G solvation = -27925.473122 eV Core-core repulsion = 23054.742604 eV Total energy + Delta-G solvation = -4870.730518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.49369 -48.13068 -47.78621 -45.58126 -43.74713 -40.95105 -37.84144 -36.76304 -34.81473 -34.48532 -33.57879 -31.21914 -29.81996 -26.81425 -26.45151 -25.48858 -23.82958 -22.80084 -22.34049 -22.17565 -20.44853 -19.53055 -19.06632 -19.02302 -18.82676 -18.67750 -17.85335 -17.70057 -17.23467 -16.97740 -16.63355 -16.31154 -15.91194 -15.20019 -15.04563 -14.67499 -14.52792 -14.34897 -14.32475 -14.09838 -14.04256 -14.02952 -13.96365 -13.67748 -13.55885 -13.18487 -12.98880 -12.84210 -12.62956 -12.27825 -11.93514 -11.79003 -11.68151 -11.06263 -10.73756 -10.44549 -9.57857 -8.25546 -6.57109 -1.15188 0.02433 0.24175 1.01308 1.22620 1.47845 1.49598 1.52888 1.57352 1.61999 1.97101 2.35847 2.40064 2.61169 2.89788 3.10612 3.49582 3.61237 3.69914 3.73691 3.78543 3.83066 4.02027 4.06553 4.52241 4.69475 4.84906 4.86460 4.97333 5.34158 5.37983 5.59310 5.78824 6.10274 6.43939 6.57936 6.68956 7.15282 8.67390 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.002901 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.409250 B = 9648.396512 C =10161.695439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.020 3.980 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.565 4.565 8 H 0.096 0.904 9 C 0.253 3.747 10 H 0.067 0.933 11 N -0.665 5.665 12 C 0.609 3.391 13 O -0.532 6.532 14 C 0.126 3.874 15 N -0.218 5.218 16 N -0.269 5.269 17 C 0.271 3.729 18 C -0.028 4.028 19 C -0.084 4.084 20 C -0.221 4.221 21 C 0.027 3.973 22 O -0.184 6.184 23 O -0.197 6.197 24 C 0.414 3.586 25 F -0.200 7.200 26 F -0.144 7.144 27 F -0.219 7.219 28 H 0.272 0.728 29 H 0.424 0.576 30 H 0.182 0.818 31 H 0.200 0.800 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -19.652 -2.604 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.601 4.601 8 H 0.114 0.886 9 C 0.147 3.853 10 H 0.084 0.916 11 N -0.317 5.317 12 C 0.389 3.611 13 O -0.407 6.407 14 C -0.085 4.085 15 N -0.073 5.073 16 N -0.121 5.121 17 C 0.068 3.932 18 C -0.078 4.078 19 C -0.106 4.106 20 C -0.239 4.239 21 C -0.042 4.042 22 O -0.080 6.080 23 O -0.074 6.074 24 C 0.357 3.643 25 F -0.182 7.182 26 F -0.125 7.125 27 F -0.201 7.201 28 H 0.082 0.918 29 H 0.263 0.737 30 H 0.199 0.801 31 H 0.217 0.783 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 9.992 -19.054 -2.470 21.657 hybrid contribution -0.921 0.469 0.019 1.034 sum 9.071 -18.585 -2.451 20.826 Atomic orbital electron populations 1.70496 1.07402 1.28535 1.43976 1.25953 0.95921 1.03538 0.93177 0.85123 0.78526 0.76871 0.78661 1.19438 1.20876 1.18300 1.21193 0.94801 0.87709 1.56428 0.88565 1.19700 0.88530 0.86009 0.91042 0.91576 1.45610 1.18442 1.07955 1.59696 1.16014 0.84308 0.80977 0.79769 1.90913 1.20326 1.82460 1.47000 1.26793 0.94930 0.85167 1.01584 1.74811 1.03475 1.14636 1.14422 1.75143 1.24114 0.95598 1.17271 1.24556 0.79761 0.93216 0.95714 1.17823 0.91871 0.84600 1.13538 1.22401 0.96753 0.93633 0.97772 1.22343 0.98395 0.97945 1.05259 1.25649 0.94316 0.85526 0.98704 1.84158 1.39846 1.21329 1.62626 1.85060 1.38181 1.21102 1.63054 1.23209 0.80856 0.72642 0.87556 1.93011 1.74030 1.96124 1.55010 1.93401 1.68666 1.54180 1.96266 1.93074 1.81557 1.48419 1.97005 0.91826 0.73699 0.80073 0.78265 0.72238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.71 9.50 21.45 0.20 -46.51 16 2 C 0.02 1.02 5.20 84.66 0.44 1.46 16 3 Si 0.99 39.65 29.54 68.60 2.03 41.67 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.56 -27.88 8.47 25.60 0.22 -27.66 16 8 H 0.10 4.40 7.74 -2.91 -0.02 4.37 16 9 C 0.25 12.41 2.21 44.24 0.10 12.51 16 10 H 0.07 3.61 7.58 -2.39 -0.02 3.60 16 11 N -0.66 -27.93 4.98 -449.73 -2.24 -30.17 16 12 C 0.61 25.79 7.33 86.55 0.63 26.43 16 13 O -0.53 -25.87 15.68 0.02 0.00 -25.87 16 14 C 0.13 4.70 8.19 87.05 0.71 5.42 16 15 N -0.22 -7.52 11.92 -166.21 -1.98 -9.50 16 16 N -0.27 -8.38 12.27 -166.30 -2.04 -10.43 16 17 C 0.27 8.08 8.26 86.82 0.72 8.80 16 18 C -0.03 -0.63 7.23 24.08 0.17 -0.46 16 19 C -0.08 -1.25 10.83 22.43 0.24 -1.01 16 20 C -0.22 -1.79 10.88 22.09 0.24 -1.55 16 21 C 0.03 0.24 12.08 67.08 0.81 1.05 16 22 O -0.18 -3.65 10.67 -6.30 -0.07 -3.72 16 23 O -0.20 -6.99 10.92 -10.70 -0.12 -7.11 16 24 C 0.41 21.02 2.81 71.98 0.20 21.22 16 25 F -0.20 -9.69 16.94 44.97 0.76 -8.93 16 26 F -0.14 -7.88 12.91 44.97 0.58 -7.30 16 27 F -0.22 -11.06 15.67 44.97 0.70 -10.36 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.42 15.79 8.23 -92.71 -0.76 15.03 16 30 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.20 0.16 8.06 -2.91 -0.02 0.13 16 32 H 0.26 -0.43 8.06 -2.91 -0.02 -0.46 16 Total: -1.00 -66.74 311.84 2.80 -63.95 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.48 Total: 8.08 kcal Atomic # 6 Polarization: 41.71 SS G_CDS: 4.49 Total: 46.20 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -6.06 Total: -96.61 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.18 Total: -36.70 kcal Atomic # 9 Polarization: -28.63 SS G_CDS: 2.05 Total: -26.58 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -66.74 2.80 -63.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471959897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.048 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds