Wall clock time and date at job start Tue Mar 31 2020 17:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21529 * 120.00108 * 0.02562 * 7 6 5 9 9 C 1.47997 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.39977 * 120.94267 * 89.71928 * 9 7 6 11 11 Cl 1.73602 * 120.50811 * 0.02562 * 10 9 7 12 12 C 1.38289 * 118.97533 * 179.71232 * 10 9 7 13 13 N 1.31788 * 120.91922 * 0.57881 * 12 10 9 14 14 C 1.31788 * 122.09411 * 359.71986 * 13 12 10 15 15 C 1.38299 * 120.91500 * 359.97371 * 14 13 12 16 16 Cl 1.73600 * 120.50862 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 3 2 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 3 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 3 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 28 28 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 29 29 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 30 30 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 31 31 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 32 32 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 33 33 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 34 34 H 1.08005 * 119.54162 * 180.31545 * 12 10 9 35 35 H 1.08004 * 119.54271 * 180.02562 * 14 13 12 36 36 H 0.97004 * 119.99747 * 95.00774 * 17 3 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1649 2.1466 -0.2596 9 6 5.8890 4.4494 0.0346 10 6 6.2271 4.9856 1.2826 11 17 6.0639 4.0329 2.7246 12 6 6.6992 6.2838 1.3484 13 7 6.8213 7.0159 0.2594 14 6 6.5090 6.5529 -0.9343 15 6 6.0349 5.2636 -1.0946 16 17 5.6273 4.6643 -2.6721 17 7 1.6524 2.0974 1.2518 18 6 0.4156 2.6734 1.3688 19 1 -0.2743 2.6446 0.5384 20 6 0.0486 3.2945 2.5548 21 7 0.8874 3.3249 3.5687 22 14 -1.6388 4.0796 2.7147 23 1 -1.5658 5.5007 2.2897 24 1 -2.6061 3.3542 1.8525 25 1 -2.0861 4.0083 4.1289 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8311 0.6659 32 1 3.8498 1.0377 -1.0961 33 1 3.4410 3.5483 0.1315 34 1 6.9676 6.7050 2.3060 35 1 6.6256 7.1888 -1.7994 36 1 2.2720 2.1231 1.9978 37 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481849322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:58 Heat of formation + Delta-G solvation = -25.512882 kcal Electronic energy + Delta-G solvation = -23845.801283 eV Core-core repulsion = 20095.307405 eV Total energy + Delta-G solvation = -3750.493878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -41.95359 -40.48790 -38.46844 -38.10912 -37.82759 -35.54644 -34.46686 -33.80997 -32.28902 -31.33998 -29.51877 -26.51826 -25.29471 -24.93549 -23.99616 -22.04472 -21.61743 -19.65227 -19.28451 -18.53848 -17.99218 -17.48786 -16.92993 -16.66040 -16.07886 -15.83883 -15.77083 -15.67950 -15.45064 -14.88630 -14.71317 -14.29390 -13.81228 -13.67202 -13.54918 -13.22945 -13.10021 -12.85160 -12.72555 -12.61333 -12.28528 -12.17046 -11.98204 -11.84639 -11.70718 -11.53745 -11.18301 -11.04587 -10.90611 -10.84697 -10.28445 -10.18779 -9.05658 -8.24259 -5.20087 -0.67779 -0.56935 0.43325 0.81348 1.14272 1.61722 1.69949 1.82415 1.83414 2.15152 2.74973 3.09447 3.19604 3.29981 3.44824 3.51044 3.72078 3.77225 3.80512 4.10650 4.25371 4.38693 4.44976 4.47683 4.61662 4.76358 4.95557 4.99551 5.01450 5.12330 5.26441 5.46201 5.65428 5.74781 6.20685 6.33934 6.60726 6.81871 7.16643 8.06504 8.18948 9.25894 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.004414 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.851251 B = 6342.378464 C = 7176.519216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.171 3.829 4 H 0.058 0.942 5 C 0.121 3.879 6 N -0.692 5.692 7 C 0.565 3.435 8 O -0.552 6.552 9 C -0.080 4.080 10 C -0.065 4.065 11 Cl -0.032 7.032 12 C 0.129 3.871 13 N -0.447 5.447 14 C 0.132 3.868 15 C -0.060 4.060 16 Cl -0.023 7.023 17 N -0.738 5.738 18 C -0.304 4.304 19 H 0.071 0.929 20 C -0.102 4.102 21 N -0.977 5.977 22 Si 1.117 2.883 23 H -0.289 1.289 24 H -0.275 1.275 25 H -0.302 1.302 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.206 0.794 35 H 0.214 0.786 36 H 0.359 0.641 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.759 4.733 -10.813 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.341 5.341 7 C 0.349 3.651 8 O -0.430 6.430 9 C -0.093 4.093 10 C -0.095 4.095 11 Cl -0.003 7.003 12 C -0.028 4.028 13 N -0.156 5.156 14 C -0.026 4.026 15 C -0.090 4.090 16 Cl 0.006 6.994 17 N -0.381 5.381 18 C -0.435 4.435 19 H 0.089 0.911 20 C -0.293 4.293 21 N -0.626 5.626 22 Si 0.945 3.055 23 H -0.217 1.217 24 H -0.201 1.201 25 H -0.229 1.229 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.222 0.778 35 H 0.230 0.770 36 H 0.191 0.809 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.349 5.578 -10.070 15.480 hybrid contribution 0.508 -1.792 -0.392 1.904 sum 10.858 3.786 -10.462 15.546 Atomic orbital electron populations 1.21674 0.95875 1.00539 1.01765 1.21976 0.96722 0.97092 1.01117 1.20641 0.90510 0.93378 0.89274 0.92419 1.21723 0.94582 0.81810 1.02167 1.45899 1.06240 1.11270 1.70727 1.17935 0.83000 0.87313 0.76847 1.90790 1.56595 1.45266 1.50383 1.20303 1.00966 0.95072 0.92957 1.22329 1.03935 0.95349 0.87922 1.98460 1.95873 1.71323 1.34606 1.23367 0.92574 0.87175 0.99691 1.67980 1.14223 1.35059 0.98310 1.23486 0.91449 0.90617 0.97064 1.22247 1.03671 0.95695 0.87366 1.98426 1.91654 1.87889 1.21461 1.42572 1.15868 1.67283 1.12329 1.20213 0.93159 1.29902 1.00251 0.91129 1.26747 1.07920 1.02015 0.92667 1.70954 1.08624 1.49831 1.33202 0.82717 0.72034 0.75678 0.75080 1.21664 1.20057 1.22943 0.92822 0.93353 0.93331 0.90484 0.93614 0.92424 0.89443 0.75444 0.77773 0.76981 0.80934 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.18 71.98 0.66 -4.06 16 2 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 3 C 0.17 5.93 2.59 44.99 0.12 6.04 16 4 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 5 C 0.12 3.84 5.23 86.38 0.45 4.29 16 6 N -0.69 -22.38 5.39 -465.83 -2.51 -24.89 16 7 C 0.57 18.49 5.63 86.83 0.49 18.98 16 8 O -0.55 -20.93 17.10 -3.81 -0.07 -21.00 16 9 C -0.08 -2.27 5.67 -19.85 -0.11 -2.39 16 10 C -0.07 -1.73 6.38 22.70 0.14 -1.58 16 11 Cl -0.03 -0.93 28.17 -2.72 -0.08 -1.00 16 12 C 0.13 2.71 10.98 84.71 0.93 3.64 16 13 N -0.45 -9.09 10.33 -195.80 -2.02 -11.11 16 14 C 0.13 2.42 10.98 84.71 0.93 3.35 16 15 C -0.06 -1.39 6.38 22.71 0.14 -1.24 16 16 Cl -0.02 -0.51 28.17 -2.72 -0.08 -0.59 16 17 N -0.74 -32.51 4.50 -322.94 -1.45 -33.96 16 18 C -0.30 -15.11 7.75 84.03 0.65 -14.46 16 19 H 0.07 3.44 7.32 -2.91 -0.02 3.42 16 20 C -0.10 -5.48 5.50 84.86 0.47 -5.02 16 21 N -0.98 -57.85 13.70 21.65 0.30 -57.55 16 22 Si 1.12 49.87 29.92 68.60 2.05 51.92 16 23 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.98 5.99 -2.38 -0.01 1.97 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.41 13.89 8.12 -92.71 -0.75 13.14 16 34 H 0.21 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.36 17.25 6.63 -92.71 -0.61 16.63 16 37 H 0.24 14.45 6.77 -92.71 -0.63 13.82 16 Total: -1.00 -64.03 348.38 1.10 -62.93 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.09 Total: 31.61 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.05 Total: 3.63 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.69 Total: -127.51 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.07 Total: -21.00 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.15 Total: -1.59 kcal Total: -64.03 1.10 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481849322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.420 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds