Wall clock time and date at job start Tue Mar 31 2020 16:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47085 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47135 * 30.00421 * 3 2 1 6 6 H 1.48498 * 109.46894 * 150.00154 * 3 2 1 7 7 C 1.38809 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99873 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00183 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00204 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47238 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47013 * 65.00296 * 11 10 9 13 13 N 1.46497 * 109.47261 * 305.00075 * 11 10 9 14 14 C 1.34777 * 119.99923 * 154.99482 * 13 11 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 11 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 11 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53000 * 109.47218 * 185.00275 * 11 10 9 25 25 C 1.53004 * 117.49873 * 248.74953 * 24 11 10 26 26 C 1.53003 * 117.49916 * 180.08877 * 24 11 10 27 27 H 0.96994 * 120.00644 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99577 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46791 * 59.99800 * 10 9 7 30 30 H 1.09000 * 109.47385 * 300.00177 * 10 9 7 31 31 H 0.97000 * 120.00330 * 335.00591 * 13 11 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.08995 * 115.55083 * 34.41731 * 24 11 10 34 34 H 1.09003 * 117.49654 * 0.02562 * 25 24 11 35 35 H 1.08996 * 117.50020 * 145.02111 * 25 24 11 36 36 H 1.09004 * 117.49592 * 214.97831 * 26 24 11 37 37 H 1.09003 * 117.49634 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0024 12 1 5.8950 -1.6973 0.9286 13 7 5.9509 -1.3235 -1.1344 14 6 7.0488 -0.5434 -1.0842 15 8 7.7626 -0.5601 -0.0985 16 6 7.3830 0.3249 -2.2163 17 6 8.4728 1.1664 -2.3044 18 6 8.4015 1.8038 -3.5465 19 17 9.5297 2.9703 -4.1629 20 6 7.2969 1.3444 -4.1877 21 17 6.7730 1.8282 -5.7705 22 7 6.6694 0.4448 -3.3891 23 1 5.8544 -0.0337 -3.6071 24 6 6.3804 -3.5108 -0.1281 25 6 7.1804 -3.9826 1.0877 26 6 7.9088 -3.4433 -0.1459 27 1 -0.4851 0.8399 0.0004 28 1 3.8646 -0.3620 -0.0014 29 1 3.8485 -3.0425 -0.8909 30 1 3.8493 -3.0422 0.8891 31 1 5.3821 -1.3103 -1.9200 32 1 9.2363 1.3079 -1.5539 33 1 5.9031 -4.2735 -0.7434 34 1 7.1620 -3.3531 1.9774 35 1 7.2297 -5.0557 1.2721 36 1 8.4370 -4.1620 -0.7726 37 1 8.3700 -2.4587 -0.0684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483578200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:03 Heat of formation + Delta-G solvation = 37.675472 kcal Electronic energy + Delta-G solvation = -23630.183785 eV Core-core repulsion = 19882.429960 eV Total energy + Delta-G solvation = -3747.753825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78943 -39.75535 -37.38365 -37.06627 -36.71088 -35.32801 -33.75711 -31.68042 -31.30435 -29.77397 -28.25730 -24.27937 -23.25448 -22.24550 -21.50503 -21.21526 -20.70980 -20.29713 -19.35715 -17.76479 -16.65006 -16.24948 -15.85397 -15.19952 -15.07481 -15.00669 -14.46420 -14.28967 -13.89735 -13.72752 -13.59436 -13.38565 -12.87948 -12.42351 -12.21061 -12.09999 -12.04503 -11.72446 -11.40663 -11.39213 -11.18596 -11.13917 -10.98813 -10.41648 -10.28646 -10.16177 -9.96923 -9.71649 -9.33559 -9.09142 -9.02250 -8.53447 -7.39852 -5.89227 -3.26642 0.93150 1.15142 1.82422 1.92821 2.81545 3.06404 3.11826 3.25604 3.31888 3.37155 3.95004 4.46995 4.51224 4.59507 4.63323 4.98376 5.06102 5.11368 5.22910 5.32221 5.38119 5.48066 5.61965 5.73818 5.75684 5.87722 5.97908 6.08613 6.15263 6.22288 6.34326 6.42161 6.57886 6.64540 7.40203 7.84906 8.04150 8.29020 9.06734 9.78820 9.97252 11.28694 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.004479 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.205989 B = 6249.979745 C = 8339.050543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.756 5.756 10 C 0.152 3.848 11 C 0.166 3.834 12 H 0.093 0.907 13 N -0.709 5.709 14 C 0.591 3.409 15 O -0.520 6.520 16 C -0.012 4.012 17 C -0.089 4.089 18 C -0.100 4.100 19 Cl -0.030 7.030 20 C 0.099 3.901 21 Cl 0.004 6.996 22 N -0.519 5.519 23 H 0.430 0.570 24 C -0.166 4.166 25 C -0.168 4.168 26 C -0.185 4.185 27 H 0.261 0.739 28 H 0.362 0.638 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.399 0.601 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.772 -1.129 -9.258 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.402 5.402 10 C 0.025 3.975 11 C 0.062 3.938 12 H 0.111 0.889 13 N -0.358 5.358 14 C 0.377 3.623 15 O -0.397 6.397 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.135 4.135 19 Cl -0.001 7.001 20 C -0.046 4.046 21 Cl 0.033 6.967 22 N -0.121 5.121 23 H 0.271 0.729 24 C -0.185 4.185 25 C -0.205 4.205 26 C -0.222 4.222 27 H 0.071 0.929 28 H 0.195 0.805 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.233 0.767 32 H 0.186 0.814 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.908 -1.199 -8.720 20.856 hybrid contribution -0.297 1.151 -0.835 1.453 sum 18.611 -0.048 -9.555 20.920 Atomic orbital electron populations 1.69685 1.05066 1.25978 1.56953 1.24651 0.95175 0.97079 1.01726 0.86647 0.79451 0.85218 0.77789 1.21141 1.21427 1.20310 1.19030 0.80381 0.94804 1.43747 0.89016 1.42709 1.04159 1.01987 1.91352 1.20918 0.86636 0.89910 1.00081 1.20963 0.95495 0.88063 0.89323 0.88879 1.45941 1.26015 1.42717 1.21136 1.16778 0.81369 0.79000 0.85133 1.90801 1.50481 1.66855 1.31553 1.20544 0.97064 1.06663 0.88367 1.21122 0.98338 0.96016 0.96036 1.19584 0.95298 1.02199 0.96383 1.98346 1.58875 1.56071 1.86833 1.20598 0.96010 0.99032 0.88918 1.98433 1.90298 1.89478 1.18500 1.41961 1.23344 1.33433 1.13315 0.72937 1.22617 0.93785 0.98894 1.03252 1.22912 1.04032 1.00924 0.92673 1.23277 0.93773 1.04146 1.00960 0.92893 0.80520 0.94781 0.93475 0.76706 0.81445 0.87586 0.88613 0.88980 0.89681 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.97 55.49 0.78 -27.55 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.59 27.73 -169.99 -4.71 16.87 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.25 -6.70 10.47 -15.06 -0.16 -6.86 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 N -0.76 -16.57 5.24 -59.91 -0.31 -16.88 16 10 C 0.15 2.61 5.80 -4.05 -0.02 2.59 16 11 C 0.17 2.40 2.43 -67.93 -0.17 2.23 16 12 H 0.09 1.53 7.33 -51.93 -0.38 1.15 16 13 N -0.71 -9.47 4.49 -55.16 -0.25 -9.72 16 14 C 0.59 8.29 7.11 -12.91 -0.09 8.19 16 15 O -0.52 -8.47 13.90 5.18 0.07 -8.40 16 16 C -0.01 -0.15 7.06 -81.93 -0.58 -0.73 16 17 C -0.09 -1.06 10.64 -39.10 -0.42 -1.47 16 18 C -0.10 -1.14 6.66 -39.90 -0.27 -1.41 16 19 Cl -0.03 -0.31 29.12 -51.86 -1.51 -1.82 16 20 C 0.10 1.09 7.75 -16.75 -0.13 0.96 16 21 Cl 0.00 0.04 29.13 -51.86 -1.51 -1.47 16 22 N -0.52 -5.51 6.01 -6.51 -0.04 -5.55 16 23 H 0.43 3.72 8.19 -40.82 -0.33 3.38 16 24 C -0.17 -2.03 5.36 -90.62 -0.49 -2.51 16 25 C -0.17 -1.93 10.18 -26.69 -0.27 -2.21 16 26 C -0.18 -2.22 9.74 -26.69 -0.26 -2.48 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.36 7.96 5.20 -40.82 -0.21 7.75 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.40 4.77 7.73 -40.82 -0.32 4.46 16 32 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.11 1.20 8.11 -51.93 -0.42 0.78 16 34 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 1.63 5.01 -51.93 -0.26 1.37 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -31.03 345.64 -9.27 -40.30 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.05 Total: 12.52 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.94 Total: -3.51 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.17 Total: -59.70 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -3.02 Total: -3.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.03 -9.27 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483578200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.971 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds