Wall clock time and date at job start Tue Mar 31 2020 16:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47085 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47135 * 30.00421 * 3 2 1 6 6 H 1.48498 * 109.46894 * 150.00154 * 3 2 1 7 7 C 1.38809 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99873 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00183 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00204 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47238 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47013 * 65.00296 * 11 10 9 13 13 N 1.46497 * 109.47261 * 305.00075 * 11 10 9 14 14 C 1.34777 * 119.99923 * 154.99482 * 13 11 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 11 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 11 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53000 * 109.47218 * 185.00275 * 11 10 9 25 25 C 1.53004 * 117.49873 * 248.74953 * 24 11 10 26 26 C 1.53003 * 117.49916 * 180.08877 * 24 11 10 27 27 H 0.96994 * 120.00644 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99577 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46791 * 59.99800 * 10 9 7 30 30 H 1.09000 * 109.47385 * 300.00177 * 10 9 7 31 31 H 0.97000 * 120.00330 * 335.00591 * 13 11 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.08995 * 115.55083 * 34.41731 * 24 11 10 34 34 H 1.09003 * 117.49654 * 0.02562 * 25 24 11 35 35 H 1.08996 * 117.50020 * 145.02111 * 25 24 11 36 36 H 1.09004 * 117.49592 * 214.97831 * 26 24 11 37 37 H 1.09003 * 117.49634 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0024 12 1 5.8950 -1.6973 0.9286 13 7 5.9509 -1.3235 -1.1344 14 6 7.0488 -0.5434 -1.0842 15 8 7.7626 -0.5601 -0.0985 16 6 7.3830 0.3249 -2.2163 17 6 8.4728 1.1664 -2.3044 18 6 8.4015 1.8038 -3.5465 19 17 9.5297 2.9703 -4.1629 20 6 7.2969 1.3444 -4.1877 21 17 6.7730 1.8282 -5.7705 22 7 6.6694 0.4448 -3.3891 23 1 5.8544 -0.0337 -3.6071 24 6 6.3804 -3.5108 -0.1281 25 6 7.1804 -3.9826 1.0877 26 6 7.9088 -3.4433 -0.1459 27 1 -0.4851 0.8399 0.0004 28 1 3.8646 -0.3620 -0.0014 29 1 3.8485 -3.0425 -0.8909 30 1 3.8493 -3.0422 0.8891 31 1 5.3821 -1.3103 -1.9200 32 1 9.2363 1.3079 -1.5539 33 1 5.9031 -4.2735 -0.7434 34 1 7.1620 -3.3531 1.9774 35 1 7.2297 -5.0557 1.2721 36 1 8.4370 -4.1620 -0.7726 37 1 8.3700 -2.4587 -0.0684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483578200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:03 Heat of formation + Delta-G solvation = 17.776317 kcal Electronic energy + Delta-G solvation = -23631.046677 eV Core-core repulsion = 19882.429960 eV Total energy + Delta-G solvation = -3748.616718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70317 -40.84365 -38.46590 -37.92513 -37.55156 -36.78168 -35.18213 -33.44257 -32.32611 -30.95544 -29.53948 -25.90110 -24.38396 -23.19499 -23.01539 -22.14642 -21.64253 -21.38516 -20.48934 -19.59934 -17.71713 -17.29052 -16.94600 -16.62224 -16.26933 -15.96447 -15.93179 -15.40846 -15.05954 -14.89189 -14.77400 -14.62525 -14.47596 -13.91259 -13.56955 -13.03410 -12.94514 -12.93336 -12.77179 -12.59448 -12.52903 -12.29549 -12.16255 -11.99806 -11.87182 -11.47363 -11.17666 -11.05599 -10.98307 -10.24029 -10.14910 -9.43077 -9.35777 -8.06295 -5.39886 -0.00995 0.29439 0.97580 1.02334 1.30676 1.35332 1.41131 1.82662 2.08077 2.14255 2.42022 2.98586 3.25700 3.39298 3.59938 3.68983 3.82180 4.02666 4.14030 4.14613 4.27655 4.38917 4.43238 4.58155 4.82759 4.86507 4.96894 5.04332 5.07537 5.19047 5.27845 5.31891 5.45598 5.73716 5.79987 6.17033 6.35188 6.97265 7.03321 7.78009 7.95765 9.14951 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.004479 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.205989 B = 6249.979745 C = 8339.050543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.757 5.757 10 C 0.152 3.848 11 C 0.177 3.823 12 H 0.073 0.927 13 N -0.705 5.705 14 C 0.593 3.407 15 O -0.546 6.546 16 C -0.024 4.024 17 C -0.089 4.089 18 C -0.110 4.110 19 Cl -0.023 7.023 20 C 0.103 3.897 21 Cl 0.017 6.983 22 N -0.511 5.511 23 H 0.439 0.561 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.181 4.181 27 H 0.258 0.742 28 H 0.363 0.637 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.406 0.594 32 H 0.173 0.827 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.456 -1.278 -10.224 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.245 4.245 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.403 5.403 10 C 0.026 3.974 11 C 0.073 3.927 12 H 0.092 0.908 13 N -0.355 5.355 14 C 0.381 3.619 15 O -0.425 6.425 16 C -0.138 4.138 17 C -0.116 4.116 18 C -0.144 4.144 19 Cl 0.006 6.994 20 C -0.043 4.043 21 Cl 0.045 6.955 22 N -0.113 5.113 23 H 0.281 0.719 24 C -0.186 4.186 25 C -0.202 4.202 26 C -0.218 4.218 27 H 0.067 0.933 28 H 0.197 0.803 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.242 0.758 32 H 0.190 0.810 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.627 -1.383 -9.707 22.839 hybrid contribution -0.794 1.119 -0.561 1.482 sum 19.833 -0.264 -10.268 22.335 Atomic orbital electron populations 1.69847 1.06913 1.26573 1.59594 1.25338 0.95853 1.00547 1.02802 0.85611 0.78273 0.80738 0.78302 1.19758 1.22546 1.19101 1.19029 0.82411 0.93589 1.41098 0.91693 1.42690 1.02576 1.03882 1.91112 1.21058 0.87995 0.87931 1.00455 1.20700 0.93694 0.89337 0.89017 0.90838 1.45867 1.26093 1.42540 1.21042 1.16902 0.81004 0.78845 0.85192 1.90793 1.51291 1.67678 1.32691 1.20267 0.97817 1.07155 0.88602 1.21272 0.98262 0.95703 0.96340 1.19665 0.95760 1.02605 0.96398 1.98348 1.58622 1.55737 1.86684 1.20720 0.95766 0.98544 0.89274 1.98442 1.90144 1.89321 1.17562 1.41909 1.23453 1.33230 1.12687 0.71908 1.22546 0.93837 0.97933 1.04297 1.23000 1.03128 1.01989 0.92045 1.23218 0.93351 1.03668 1.01576 0.93309 0.80343 0.93309 0.93651 0.75811 0.80981 0.86044 0.89565 0.86902 0.88000 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.64 13.97 21.65 0.30 -60.33 16 2 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 3 Si 0.94 44.37 27.73 68.60 1.90 46.28 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.27 -11.84 6.52 99.48 0.65 -11.19 16 7 C -0.23 -12.31 10.47 84.03 0.88 -11.43 16 8 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.76 -32.25 5.24 -343.45 -1.80 -34.05 16 10 C 0.15 4.99 5.80 86.38 0.50 5.49 16 11 C 0.18 4.86 2.43 44.99 0.11 4.97 16 12 H 0.07 2.35 7.33 -2.39 -0.02 2.33 16 13 N -0.71 -17.71 4.49 -446.63 -2.01 -19.72 16 14 C 0.59 15.87 7.11 86.41 0.61 16.49 16 15 O -0.55 -17.39 13.90 -4.38 -0.06 -17.45 16 16 C -0.02 -0.56 7.06 40.31 0.28 -0.28 16 17 C -0.09 -2.00 10.64 22.58 0.24 -1.76 16 18 C -0.11 -2.32 6.66 22.06 0.15 -2.18 16 19 Cl -0.02 -0.43 29.12 -2.72 -0.08 -0.51 16 20 C 0.10 2.05 7.75 83.52 0.65 2.70 16 21 Cl 0.02 0.30 29.13 -2.72 -0.08 0.22 16 22 N -0.51 -9.83 6.01 -174.50 -1.05 -10.88 16 23 H 0.44 6.64 8.19 -92.71 -0.76 5.88 16 24 C -0.17 -3.71 5.36 -10.79 -0.06 -3.77 16 25 C -0.16 -3.44 10.18 30.62 0.31 -3.13 16 26 C -0.18 -3.99 9.74 30.62 0.30 -3.69 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 28 H 0.36 15.34 5.20 -92.71 -0.48 14.86 16 29 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.41 8.91 7.73 -92.71 -0.72 8.19 16 32 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 34 H 0.09 1.98 8.05 -2.39 -0.02 1.96 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.61 5.01 -2.39 -0.01 2.60 16 Total: -1.00 -65.90 345.64 0.72 -65.19 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.86 Total: 30.41 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.44 Total: 0.86 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -4.55 Total: -124.98 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -65.90 0.72 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483578200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.964 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds