Wall clock time and date at job start Tue Mar 31 2020 16:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47008 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47408 * 119.99787 * 3 2 1 7 7 C 1.38814 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00379 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47381 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47512 * 295.00302 * 11 10 9 13 13 N 1.46497 * 109.46858 * 55.00114 * 11 10 9 14 14 C 1.34777 * 119.99923 * 204.99572 * 13 11 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 11 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 11 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53001 * 109.47292 * 175.00071 * 11 10 9 25 25 C 1.52996 * 117.50188 * 248.74866 * 24 11 10 26 26 C 1.52997 * 117.50169 * 180.08603 * 24 11 10 27 27 H 0.97001 * 120.00115 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99632 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46952 * 60.00251 * 10 9 7 30 30 H 1.08994 * 109.47181 * 300.00246 * 10 9 7 31 31 H 0.97000 * 120.00330 * 25.00681 * 13 11 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.09007 * 115.54573 * 34.42035 * 24 11 10 34 34 H 1.09005 * 117.49630 * 0.02562 * 25 24 11 35 35 H 1.08998 * 117.49782 * 145.01696 * 25 24 11 36 36 H 1.08991 * 117.50334 * 214.98475 * 26 24 11 37 37 H 1.09003 * 117.49657 * 0.02562 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4978 -4.8135 0.9328 13 7 0.1439 -4.6763 -1.1299 14 6 -1.0805 -5.2372 -1.0781 15 8 -1.4222 -5.8624 -0.0913 16 6 -2.0005 -5.0942 -2.2098 17 6 -3.2788 -5.6067 -2.2911 18 6 -3.7922 -5.2367 -3.5375 19 17 -5.3682 -5.6287 -4.1509 20 6 -2.8422 -4.5116 -4.1808 21 17 -3.0010 -3.8170 -5.7638 22 7 -1.7483 -4.4180 -3.3838 23 1 -0.9259 -3.9531 -3.6037 24 6 1.8245 -6.1412 -0.1245 25 6 1.6660 -6.9265 -1.4280 26 6 1.0017 -7.4310 -0.1446 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.6846 -3.7146 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.4161 -4.1778 -1.9163 32 1 -3.7865 -6.1869 -1.5349 33 1 2.7971 -6.1723 0.3667 34 1 1.0201 -6.5013 -2.1963 35 1 2.5342 -7.4744 -1.7942 36 1 1.4330 -8.3106 0.3331 37 1 -0.0817 -7.3380 -0.0686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483578201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:06 Heat of formation + Delta-G solvation = 38.046838 kcal Electronic energy + Delta-G solvation = -23662.833513 eV Core-core repulsion = 19915.095791 eV Total energy + Delta-G solvation = -3747.737722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66931 -39.77461 -37.22941 -36.93646 -36.60078 -35.02095 -33.52125 -31.55716 -31.12183 -29.50692 -27.98425 -24.25594 -23.24569 -22.33576 -21.60463 -21.14791 -20.57987 -19.80609 -19.18785 -17.32884 -16.44826 -16.19081 -15.86642 -15.30151 -14.96143 -14.76409 -14.31515 -14.04585 -13.71222 -13.54321 -13.48230 -13.29936 -12.96778 -12.23494 -12.10327 -11.95732 -11.76517 -11.61704 -11.46519 -11.30801 -11.05483 -10.98158 -10.87878 -10.36431 -10.23624 -9.97659 -9.88195 -9.66930 -9.20180 -9.01622 -8.89796 -8.40214 -7.07123 -5.87136 -3.17968 1.07320 1.27321 1.93944 2.06051 2.96016 3.23078 3.29226 3.36671 3.41904 3.42922 3.96877 4.47211 4.64029 4.72611 4.83393 5.08430 5.11000 5.21161 5.44178 5.45416 5.46649 5.63471 5.75908 5.88798 5.91297 6.01612 6.12303 6.19457 6.24600 6.33606 6.43768 6.55174 6.71178 6.77836 7.55169 7.59165 8.19280 8.30217 9.42203 9.96258 10.31522 11.34746 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.004001 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.276087 B = 6995.800861 C = 8998.744732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.169 3.831 12 H 0.096 0.904 13 N -0.705 5.705 14 C 0.592 3.408 15 O -0.520 6.520 16 C -0.008 4.008 17 C -0.091 4.091 18 C -0.099 4.099 19 Cl -0.032 7.032 20 C 0.099 3.901 21 Cl 0.002 6.998 22 N -0.517 5.517 23 H 0.430 0.570 24 C -0.161 4.161 25 C -0.178 4.178 26 C -0.185 4.185 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.399 0.601 32 H 0.167 0.833 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -13.916 -9.768 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.065 3.935 12 H 0.114 0.886 13 N -0.355 5.355 14 C 0.378 3.622 15 O -0.396 6.396 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.134 4.134 19 Cl -0.004 7.004 20 C -0.046 4.046 21 Cl 0.030 6.970 22 N -0.118 5.118 23 H 0.270 0.730 24 C -0.181 4.181 25 C -0.215 4.215 26 C -0.222 4.222 27 H 0.067 0.933 28 H 0.219 0.781 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.234 0.766 32 H 0.185 0.815 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.228 -14.116 -9.227 17.386 hybrid contribution 0.640 1.630 -0.805 1.927 sum -3.588 -12.487 -10.033 16.415 Atomic orbital electron populations 1.69651 1.05111 1.25969 1.57064 1.24750 0.95496 0.97731 1.02586 0.86270 0.78540 0.83454 0.77889 1.21262 1.21651 1.21163 1.19153 0.91018 0.83987 1.43628 0.91140 1.42344 1.05939 0.99719 1.89724 1.20928 0.92997 0.84987 0.99173 1.20840 0.90046 0.93111 0.89504 0.88599 1.45871 1.14367 1.54149 1.21063 1.16768 0.80844 0.79499 0.85111 1.90801 1.75755 1.41659 1.31430 1.20534 0.97903 1.05582 0.88230 1.21102 0.92325 1.02333 0.95932 1.19558 0.89417 1.08180 0.96266 1.98340 1.21987 1.93055 1.86977 1.20558 0.89881 1.05266 0.88853 1.98425 1.96908 1.82957 1.18676 1.41938 1.14431 1.42099 1.13296 0.72957 1.22700 1.00938 0.92356 1.02084 1.22870 1.02985 1.04096 0.91553 1.23344 1.01541 0.96759 1.00529 0.93333 0.78055 0.94525 0.95580 0.76627 0.81540 0.87032 0.89370 0.89395 0.89544 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.09 5.43 -59.91 -0.33 -17.41 16 10 C 0.15 2.66 5.80 -4.04 -0.02 2.63 16 11 C 0.17 2.61 2.59 -67.93 -0.18 2.44 16 12 H 0.10 1.69 7.58 -51.93 -0.39 1.30 16 13 N -0.70 -10.08 3.05 -55.15 -0.17 -10.25 16 14 C 0.59 8.88 6.62 -12.91 -0.09 8.79 16 15 O -0.52 -9.03 13.91 5.18 0.07 -8.96 16 16 C -0.01 -0.11 7.06 -81.93 -0.58 -0.69 16 17 C -0.09 -1.17 10.64 -39.10 -0.42 -1.58 16 18 C -0.10 -1.22 6.66 -39.90 -0.27 -1.48 16 19 Cl -0.03 -0.36 29.12 -51.86 -1.51 -1.87 16 20 C 0.10 1.17 7.75 -16.75 -0.13 1.04 16 21 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 22 N -0.52 -5.92 6.01 -6.51 -0.04 -5.96 16 23 H 0.43 4.16 8.19 -40.82 -0.33 3.83 16 24 C -0.16 -2.09 5.70 -90.62 -0.52 -2.61 16 25 C -0.18 -2.10 9.74 -26.70 -0.26 -2.36 16 26 C -0.19 -2.37 9.83 -26.70 -0.26 -2.63 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.39 9.64 7.33 -40.82 -0.30 9.34 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 5.31 7.73 -40.82 -0.32 4.99 16 32 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.11 1.33 8.11 -51.93 -0.42 0.91 16 34 H 0.09 1.05 6.67 -51.93 -0.35 0.70 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.12 1.73 5.01 -51.93 -0.26 1.47 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.80 345.84 -9.56 -39.36 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.03 Total: 14.60 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.96 Total: -3.46 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.19 Total: -60.00 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -3.02 Total: -3.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.80 -9.56 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483578201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.407 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds