Wall clock time and date at job start Tue Mar 31 2020 16:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47008 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47408 * 119.99787 * 3 2 1 7 7 C 1.38814 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00379 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47381 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47512 * 295.00302 * 11 10 9 13 13 N 1.46497 * 109.46858 * 55.00114 * 11 10 9 14 14 C 1.34777 * 119.99923 * 204.99572 * 13 11 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 11 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 11 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53001 * 109.47292 * 175.00071 * 11 10 9 25 25 C 1.52996 * 117.50188 * 248.74866 * 24 11 10 26 26 C 1.52997 * 117.50169 * 180.08603 * 24 11 10 27 27 H 0.97001 * 120.00115 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99632 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46952 * 60.00251 * 10 9 7 30 30 H 1.08994 * 109.47181 * 300.00246 * 10 9 7 31 31 H 0.97000 * 120.00330 * 25.00681 * 13 11 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.09007 * 115.54573 * 34.42035 * 24 11 10 34 34 H 1.09005 * 117.49630 * 0.02562 * 25 24 11 35 35 H 1.08998 * 117.49782 * 145.01696 * 25 24 11 36 36 H 1.08991 * 117.50334 * 214.98475 * 26 24 11 37 37 H 1.09003 * 117.49657 * 0.02562 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4978 -4.8135 0.9328 13 7 0.1439 -4.6763 -1.1299 14 6 -1.0805 -5.2372 -1.0781 15 8 -1.4222 -5.8624 -0.0913 16 6 -2.0005 -5.0942 -2.2098 17 6 -3.2788 -5.6067 -2.2911 18 6 -3.7922 -5.2367 -3.5375 19 17 -5.3682 -5.6287 -4.1509 20 6 -2.8422 -4.5116 -4.1808 21 17 -3.0010 -3.8170 -5.7638 22 7 -1.7483 -4.4180 -3.3838 23 1 -0.9259 -3.9531 -3.6037 24 6 1.8245 -6.1412 -0.1245 25 6 1.6660 -6.9265 -1.4280 26 6 1.0017 -7.4310 -0.1446 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.6846 -3.7146 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.4161 -4.1778 -1.9163 32 1 -3.7865 -6.1869 -1.5349 33 1 2.7971 -6.1723 0.3667 34 1 1.0201 -6.5013 -2.1963 35 1 2.5342 -7.4744 -1.7942 36 1 1.4330 -8.3106 0.3331 37 1 -0.0817 -7.3380 -0.0686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483578201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:06 Heat of formation + Delta-G solvation = 20.179129 kcal Electronic energy + Delta-G solvation = -23663.608315 eV Core-core repulsion = 19915.095791 eV Total energy + Delta-G solvation = -3748.512524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68233 -40.93712 -38.37554 -37.89031 -37.52563 -36.56194 -34.94893 -33.18249 -32.25057 -30.75335 -29.37160 -26.02231 -24.40973 -23.47498 -22.95839 -22.14058 -21.60560 -20.96544 -20.32339 -19.16676 -17.56299 -17.37306 -17.15954 -16.55286 -16.28664 -15.89318 -15.58093 -15.26139 -15.04474 -14.98202 -14.79988 -14.45595 -14.39983 -13.66875 -13.14160 -13.00639 -12.88494 -12.85242 -12.72792 -12.69255 -12.49986 -12.31137 -12.14193 -11.98154 -11.84817 -11.44267 -11.10237 -10.97083 -10.80798 -10.19511 -10.09873 -9.39027 -9.02124 -7.95002 -5.24481 0.03468 0.32575 1.00118 1.06226 1.48628 1.50428 1.56528 1.88437 2.14834 2.19836 2.55260 2.95270 3.39789 3.55907 3.66408 3.73017 3.96916 4.09365 4.18186 4.21261 4.41154 4.46672 4.48104 4.61721 4.83184 4.86802 5.00156 5.08043 5.11861 5.22194 5.26694 5.40402 5.46229 5.51563 5.83285 6.25180 6.39131 7.01973 7.33496 8.06107 8.29768 9.27337 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.004001 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.276087 B = 6995.800861 C = 8998.744732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.069 0.931 13 N -0.699 5.699 14 C 0.593 3.407 15 O -0.548 6.548 16 C -0.022 4.022 17 C -0.092 4.092 18 C -0.109 4.109 19 Cl -0.023 7.023 20 C 0.103 3.897 21 Cl 0.017 6.983 22 N -0.508 5.508 23 H 0.438 0.562 24 C -0.165 4.165 25 C -0.163 4.163 26 C -0.189 4.189 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.405 0.595 32 H 0.171 0.829 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -14.448 -10.919 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.075 3.925 12 H 0.087 0.913 13 N -0.349 5.349 14 C 0.380 3.620 15 O -0.427 6.427 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.143 4.143 19 Cl 0.006 6.994 20 C -0.042 4.042 21 Cl 0.045 6.955 22 N -0.110 5.110 23 H 0.280 0.720 24 C -0.185 4.185 25 C -0.200 4.200 26 C -0.225 4.225 27 H 0.058 0.942 28 H 0.206 0.794 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.240 0.760 32 H 0.188 0.812 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.914 -14.671 -10.397 18.216 hybrid contribution 0.237 1.731 -0.479 1.811 sum -2.677 -12.940 -10.875 17.114 Atomic orbital electron populations 1.69810 1.06563 1.26017 1.59301 1.25484 0.96205 1.00860 1.03617 0.85281 0.77188 0.79477 0.78192 1.20140 1.22664 1.20711 1.19570 0.91581 0.85063 1.41386 0.90308 1.42503 1.05615 1.00864 1.89602 1.21050 0.93323 0.83656 0.99687 1.20580 0.89473 0.93629 0.88842 0.91313 1.45774 1.14202 1.54068 1.20885 1.16917 0.80927 0.78953 0.85185 1.90788 1.76268 1.42956 1.32655 1.20259 0.97915 1.06962 0.88519 1.21254 0.92252 1.02052 0.96331 1.19628 0.90056 1.08469 0.96189 1.98341 1.21264 1.93007 1.86784 1.20696 0.89640 1.04604 0.89290 1.98434 1.96846 1.82653 1.17519 1.41875 1.14748 1.41668 1.12665 0.72044 1.22619 1.01215 0.90931 1.03725 1.22947 1.03262 1.02995 0.90806 1.23295 1.00378 0.97128 1.01742 0.94169 0.79364 0.94230 0.93982 0.75961 0.81160 0.85513 0.89599 0.87261 0.87895 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.97 13.06 21.65 0.28 -56.69 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.24 -12.72 9.99 84.03 0.84 -11.88 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -34.45 5.43 -343.47 -1.87 -36.32 16 10 C 0.15 5.24 5.80 86.38 0.50 5.74 16 11 C 0.18 5.46 2.59 44.99 0.12 5.58 16 12 H 0.07 2.49 7.58 -2.39 -0.02 2.47 16 13 N -0.70 -19.85 3.05 -446.62 -1.36 -21.21 16 14 C 0.59 17.94 6.62 86.41 0.57 18.51 16 15 O -0.55 -19.52 13.91 -4.38 -0.06 -19.58 16 16 C -0.02 -0.59 7.06 40.31 0.28 -0.30 16 17 C -0.09 -2.35 10.64 22.58 0.24 -2.11 16 18 C -0.11 -2.58 6.66 22.06 0.15 -2.43 16 19 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 16 20 C 0.10 2.32 7.75 83.52 0.65 2.97 16 21 Cl 0.02 0.33 29.13 -2.72 -0.08 0.25 16 22 N -0.51 -11.27 6.01 -174.50 -1.05 -12.32 16 23 H 0.44 8.07 8.19 -92.71 -0.76 7.32 16 24 C -0.17 -4.03 5.70 -10.80 -0.06 -4.09 16 25 C -0.16 -3.47 9.74 30.62 0.30 -3.17 16 26 C -0.19 -4.58 9.83 30.62 0.30 -4.28 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.37 18.95 7.33 -92.70 -0.68 18.27 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.40 10.51 7.73 -92.71 -0.72 9.79 16 32 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.13 2.72 8.11 -2.38 -0.02 2.70 16 34 H 0.09 1.88 6.67 -2.38 -0.02 1.86 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.80 5.01 -2.39 -0.01 2.79 16 Total: -1.00 -62.87 345.84 1.17 -61.70 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.99 Total: 37.17 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.35 Total: 1.25 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -3.99 Total: -126.54 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.06 Total: -19.58 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -62.87 1.17 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483578201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.876 kcal (2) G-P(sol) polarization free energy of solvation -62.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds