Wall clock time and date at job start Tue Mar 31 2020 17:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35655 * 125.70104 * 2 1 4 4 Cl 1.73606 * 125.58089 * 0.22919 * 3 2 1 5 5 C 1.35717 * 108.83877 * 179.97438 * 3 2 1 6 6 Cl 1.73599 * 126.06449 * 179.97438 * 5 3 2 7 7 C 1.39793 * 107.86953 * 0.02562 * 5 3 2 8 8 C 1.37811 * 125.69020 * 179.97438 * 2 1 3 9 9 C 1.46539 * 126.22546 * 359.97438 * 8 2 1 10 10 O 1.21708 * 120.00329 * 190.02756 * 9 8 2 11 11 N 1.34775 * 119.99762 * 10.03164 * 9 8 2 12 12 C 1.46502 * 120.00019 * 179.32791 * 11 9 8 13 13 C 1.53002 * 109.47170 * 184.98039 * 12 11 9 14 14 N 1.46503 * 115.55318 * 281.10427 * 13 12 11 15 15 C 1.36939 * 119.99927 * 306.13030 * 14 13 12 16 16 H 1.08003 * 119.99850 * 3.26126 * 15 14 13 17 17 C 1.38814 * 119.99615 * 183.26547 * 15 14 13 18 18 N 1.31620 * 120.00236 * 5.57878 * 17 15 14 19 19 Si 1.86798 * 119.99778 * 185.58314 * 17 15 14 20 20 H 1.48508 * 109.47289 * 5.01151 * 19 17 15 21 21 H 1.48498 * 109.47171 * 125.00827 * 19 17 15 22 22 H 1.48493 * 109.47460 * 245.01184 * 19 17 15 23 23 C 1.53000 * 117.49485 * 135.43668 * 13 12 11 24 24 C 1.52994 * 117.49567 * 66.77876 * 13 12 11 25 25 H 1.08999 * 109.46940 * 106.02738 * 1 2 3 26 26 H 1.09000 * 109.47382 * 226.03375 * 1 2 3 27 27 H 1.08996 * 109.46877 * 346.03356 * 1 2 3 28 28 H 1.08006 * 126.43159 * 180.02562 * 7 5 3 29 29 H 0.96999 * 120.00057 * 359.32258 * 11 9 8 30 30 H 1.08992 * 109.47344 * 304.98420 * 12 11 9 31 31 H 1.09006 * 109.47275 * 64.98079 * 12 11 9 32 32 H 0.96995 * 119.99961 * 126.12528 * 14 13 12 33 33 H 0.96993 * 119.99657 * 179.97438 * 18 17 15 34 34 H 1.09004 * 117.50084 * 0.02562 * 23 13 12 35 35 H 1.09001 * 117.49884 * 145.02354 * 23 13 12 36 36 H 1.09003 * 117.49604 * 214.97596 * 24 13 12 37 37 H 1.09000 * 117.50090 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1016 0.0000 4 17 1.6995 2.7459 0.0056 5 6 3.5554 0.7079 0.0006 6 17 4.9405 1.7545 0.0002 7 6 3.5800 -0.6898 0.0004 8 6 2.2690 -1.1193 0.0005 9 6 1.8141 -2.5123 0.0017 10 8 2.6118 -3.4129 0.1855 11 7 0.5122 -2.7962 -0.2010 12 6 0.0599 -4.1895 -0.2145 13 6 -1.4239 -4.2405 -0.5845 14 7 -2.3566 -3.9173 0.4981 15 6 -2.2842 -4.5910 1.6881 16 1 -1.5066 -5.3233 1.8476 17 6 -3.2104 -4.3326 2.6893 18 7 -4.2218 -3.5229 2.4572 19 14 -3.0213 -5.1340 4.3659 20 1 -1.7478 -5.8968 4.4093 21 1 -3.0060 -4.0852 5.4170 22 1 -4.1595 -6.0573 4.6045 23 6 -1.8620 -5.2944 -1.6034 24 6 -1.8132 -3.8174 -2.0023 25 1 -0.3633 -0.2837 -0.9877 26 1 -0.3634 -0.7134 0.7396 27 1 -0.3633 0.9973 0.2480 28 1 4.4601 -1.3158 0.0011 29 1 -0.1252 -2.0780 -0.3378 30 1 0.6369 -4.7518 -0.9486 31 1 0.2033 -4.6277 0.7732 32 1 -3.0253 -3.2261 0.3719 33 1 -4.8691 -3.3427 3.1567 34 1 -1.0933 -5.9518 -2.0097 35 1 -2.8444 -5.7471 -1.4685 36 1 -2.7636 -3.2989 -2.1297 37 1 -1.0124 -3.5024 -2.6714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483737848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:18 Heat of formation + Delta-G solvation = 28.445635 kcal Electronic energy + Delta-G solvation = -23635.031299 eV Core-core repulsion = 19886.877237 eV Total energy + Delta-G solvation = -3748.154061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.79713 -40.47536 -38.96216 -37.91668 -37.56848 -35.64264 -34.99263 -33.83350 -31.68039 -30.75192 -27.86483 -27.86355 -25.95256 -23.80428 -23.09259 -22.10794 -21.38637 -20.49955 -19.23215 -19.02959 -17.59157 -17.40451 -17.09611 -16.70548 -16.11305 -15.93538 -15.56691 -15.44708 -15.30504 -14.84968 -14.68316 -14.34321 -14.27526 -13.73814 -13.62655 -13.31148 -13.03453 -12.97015 -12.82139 -12.50791 -12.45812 -12.30024 -12.18814 -12.05069 -11.97389 -11.66808 -11.42819 -11.06047 -10.65616 -10.24206 -9.93688 -9.37709 -9.01038 -7.98158 -5.25369 0.03109 0.30805 0.94083 1.06101 1.44023 1.47647 1.54923 1.71184 2.05679 2.11049 2.51280 3.05525 3.38621 3.45819 3.53175 3.62770 3.80624 3.90036 4.06521 4.14346 4.30816 4.37333 4.45350 4.47811 4.72107 4.81498 4.92638 5.02639 5.06231 5.15420 5.24672 5.36606 5.40901 5.50374 5.56185 6.24774 6.38663 7.00001 7.32357 8.03192 8.27805 9.23772 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.003285 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.095410 B = 8520.338605 C = 8974.032627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.406 5.406 3 C 0.098 3.902 4 Cl 0.019 6.981 5 C -0.110 4.110 6 Cl -0.023 7.023 7 C -0.093 4.093 8 C -0.032 4.032 9 C 0.587 3.413 10 O -0.564 6.564 11 N -0.704 5.704 12 C 0.157 3.843 13 C 0.104 3.896 14 N -0.696 5.696 15 C -0.229 4.229 16 H 0.070 0.930 17 C -0.062 4.062 18 N -0.960 5.960 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.295 1.295 22 H -0.294 1.294 23 C -0.192 4.192 24 C -0.157 4.157 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.171 0.829 29 H 0.407 0.593 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.380 0.620 33 H 0.251 0.749 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 12.066 -10.170 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.084 5.084 3 C -0.047 4.047 4 Cl 0.048 6.952 5 C -0.144 4.144 6 Cl 0.006 6.994 7 C -0.119 4.119 8 C -0.145 4.145 9 C 0.374 3.626 10 O -0.443 6.443 11 N -0.357 5.357 12 C 0.032 3.968 13 C 0.011 3.989 14 N -0.334 5.334 15 C -0.361 4.361 16 H 0.088 0.912 17 C -0.255 4.255 18 N -0.610 5.610 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.221 1.221 23 C -0.233 4.233 24 C -0.194 4.194 25 H 0.133 0.867 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.188 0.812 29 H 0.247 0.753 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.213 0.787 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.092 11.490 -9.880 19.387 hybrid contribution -0.867 0.254 1.181 1.487 sum 11.224 11.744 -8.700 18.428 Atomic orbital electron populations 1.22789 0.73784 1.07566 1.06010 1.44072 1.07775 1.03485 1.53089 1.20752 0.88997 0.83200 1.11758 1.98418 1.89620 1.10168 1.97032 1.19600 0.87029 0.91481 1.16338 1.98339 1.38892 1.64661 1.97495 1.21238 0.95806 0.92229 1.02670 1.20272 0.90557 0.85870 1.17842 1.17012 0.82542 0.86253 0.76777 1.90830 1.54857 1.46948 1.51693 1.46177 1.07902 1.10168 1.71494 1.21028 0.92756 0.81698 1.01288 1.20328 0.88697 1.04639 0.85221 1.41842 1.37386 1.43310 1.10854 1.19411 1.09155 1.16077 0.91467 0.91199 1.25304 0.97348 1.01454 1.01361 1.69778 1.15450 1.42125 1.33650 0.85331 0.77324 0.77523 0.81147 1.19807 1.22230 1.22113 1.23470 1.02785 0.92543 1.04472 1.23188 1.03464 0.97661 0.95137 0.86696 0.89033 0.86053 0.81153 0.75315 0.90095 0.93343 0.78672 0.94022 0.87627 0.90337 0.88627 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.26 127.77 1.18 1.85 16 2 N -0.41 -9.00 3.17 -522.96 -1.66 -10.66 16 3 C 0.10 2.11 7.39 83.52 0.62 2.73 16 4 Cl 0.02 0.34 28.23 -2.72 -0.08 0.26 16 5 C -0.11 -2.50 6.66 22.06 0.15 -2.36 16 6 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.53 16 7 C -0.09 -2.32 10.66 22.58 0.24 -2.08 16 8 C -0.03 -0.86 6.88 40.30 0.28 -0.58 16 9 C 0.59 18.48 7.75 86.41 0.67 19.15 16 10 O -0.56 -21.41 16.90 -4.38 -0.07 -21.48 16 11 N -0.70 -20.69 5.32 -467.21 -2.49 -23.18 16 12 C 0.16 5.23 5.62 86.38 0.49 5.71 16 13 C 0.10 3.50 2.26 3.60 0.01 3.51 16 14 N -0.70 -30.59 5.54 -303.34 -1.68 -32.27 16 15 C -0.23 -11.72 9.44 84.03 0.79 -10.93 16 16 H 0.07 3.59 7.11 -2.91 -0.02 3.57 16 17 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 18 N -0.96 -54.37 13.08 21.65 0.28 -54.08 16 19 Si 0.96 44.64 29.56 68.60 2.03 46.67 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 C -0.19 -5.78 10.11 30.62 0.31 -5.47 16 24 C -0.16 -4.07 10.15 30.62 0.31 -3.76 16 25 H 0.11 1.54 7.60 -2.39 -0.02 1.52 16 26 H 0.09 1.97 6.95 -2.39 -0.02 1.95 16 27 H 0.12 1.69 7.32 -2.39 -0.02 1.68 16 28 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.41 10.38 4.38 -92.71 -0.41 9.97 16 30 H 0.08 2.46 7.96 -2.39 -0.02 2.44 16 31 H 0.05 1.93 7.00 -2.38 -0.02 1.92 16 32 H 0.38 17.72 8.04 -92.71 -0.75 16.98 16 33 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.11 2.72 8.09 -2.39 -0.02 2.70 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -62.63 349.17 1.75 -60.87 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.01 Total: 29.48 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.51 Total: 4.92 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.54 Total: -120.19 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.27 kcal Total: -62.63 1.75 -60.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483737848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.318 kcal (2) G-P(sol) polarization free energy of solvation -62.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds