Wall clock time and date at job start Tue Mar 31 2020 16:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48504 * 109.47040 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47088 * 119.99890 * 3 2 1 7 7 C 1.38813 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99332 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99900 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47028 * 34.99581 * 10 9 7 12 12 C 1.52996 * 109.47417 * 154.99853 * 10 9 7 13 13 N 1.46497 * 109.47044 * 304.99648 * 12 10 9 14 14 C 1.34777 * 119.99923 * 179.97438 * 13 12 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53003 * 109.46854 * 274.99877 * 10 9 7 25 25 C 1.53005 * 117.49846 * 128.74352 * 24 10 9 26 26 C 1.53003 * 117.49973 * 60.08363 * 24 10 9 27 27 H 0.97002 * 119.99961 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00959 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47191 * 184.99863 * 12 10 9 30 30 H 1.09003 * 109.47220 * 64.99933 * 12 10 9 31 31 H 0.97000 * 120.00330 * 0.02562 * 13 12 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.08994 * 115.54949 * 274.41218 * 24 10 9 34 34 H 1.09004 * 117.49644 * 0.02562 * 25 24 10 35 35 H 1.08996 * 117.49604 * 145.01979 * 25 24 10 36 36 H 1.08994 * 117.49908 * 214.98157 * 26 24 10 37 37 H 1.08998 * 117.49603 * 359.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3879 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9684 -3.5507 0.5886 12 6 1.1805 -4.7523 0.6069 13 7 0.7330 -4.3363 1.9383 14 6 -0.0573 -5.1485 2.6679 15 8 -0.3989 -6.2277 2.2207 16 6 -0.5054 -4.7321 3.9996 17 6 -1.3067 -5.4602 4.8547 18 6 -1.4860 -4.6895 6.0071 19 17 -2.4167 -5.1382 7.4021 20 6 -0.7984 -3.5306 5.8444 21 17 -0.7023 -2.2417 7.0034 22 7 -0.1981 -3.5447 4.6279 23 1 0.3548 -2.8370 4.2613 24 6 2.4231 -4.0349 -1.4385 25 6 3.8836 -4.3882 -1.7269 26 6 3.3045 -3.0610 -2.2232 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 1.7554 -5.6748 0.6886 30 1 0.3134 -4.9200 -0.0320 31 1 1.0049 -3.4761 2.2946 32 1 -1.7197 -6.4404 4.6680 33 1 1.6557 -4.5765 -1.9915 34 1 4.5843 -4.3517 -0.8927 35 1 4.0769 -5.1620 -2.4697 36 1 3.1171 -2.9622 -3.2924 37 1 3.6240 -2.1507 -1.7159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490691623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:43 Heat of formation + Delta-G solvation = 29.910260 kcal Electronic energy + Delta-G solvation = -23224.458504 eV Core-core repulsion = 19476.367954 eV Total energy + Delta-G solvation = -3748.090550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60711 -39.15788 -37.60764 -36.97166 -36.60148 -34.85711 -33.56454 -31.48218 -31.01972 -29.54781 -27.88876 -24.23672 -23.16217 -21.98748 -21.75732 -20.88470 -20.44422 -19.93455 -18.98318 -17.37533 -16.34321 -15.79160 -15.67595 -15.17636 -14.89219 -14.76576 -14.44626 -14.06215 -13.92139 -13.62439 -13.45763 -13.22990 -13.04778 -12.30038 -12.09694 -11.89249 -11.58824 -11.48152 -11.27824 -11.05997 -10.97882 -10.94827 -10.83459 -10.26169 -10.15317 -10.02578 -9.62695 -9.40989 -9.20040 -9.10346 -8.93240 -8.37525 -7.18807 -5.94095 -3.24676 1.10352 1.30096 1.94827 2.06876 3.01102 3.29236 3.30582 3.34927 3.36851 3.38174 4.31409 4.48982 4.67623 4.78772 5.09464 5.24111 5.35951 5.41117 5.46449 5.50206 5.63119 5.77518 5.86650 5.95838 6.04009 6.08279 6.24761 6.25080 6.42603 6.48555 6.64371 6.69322 6.79134 6.88063 7.52807 7.62816 8.21574 8.23534 9.34801 9.87729 10.23980 11.27169 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.003503 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.330990 B = 7991.725828 C = 9932.196876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.708 5.708 14 C 0.586 3.414 15 O -0.531 6.531 16 C -0.008 4.008 17 C -0.093 4.093 18 C -0.101 4.101 19 Cl -0.033 7.033 20 C 0.099 3.901 21 Cl 0.002 6.998 22 N -0.516 5.516 23 H 0.433 0.567 24 C -0.160 4.160 25 C -0.196 4.196 26 C -0.155 4.155 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.405 0.595 32 H 0.167 0.833 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -8.700 10.501 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.005 4.005 13 N -0.359 5.359 14 C 0.372 3.628 15 O -0.408 6.408 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.135 4.135 19 Cl -0.004 7.004 20 C -0.046 4.046 21 Cl 0.031 6.969 22 N -0.117 5.117 23 H 0.274 0.726 24 C -0.181 4.181 25 C -0.233 4.233 26 C -0.193 4.193 27 H 0.067 0.933 28 H 0.219 0.781 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.241 0.759 32 H 0.184 0.816 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.488 -9.114 10.288 13.753 hybrid contribution 0.453 2.034 0.024 2.084 sum 0.941 -7.080 10.313 12.545 Atomic orbital electron populations 1.69640 1.05059 1.25986 1.56807 1.24720 0.95419 0.97581 1.02605 0.86356 0.78626 0.83767 0.77922 1.21161 1.21698 1.21295 1.19109 0.90824 0.83800 1.43640 0.91138 1.42469 1.05803 0.99408 1.88204 1.20070 0.94259 0.86044 0.91456 0.92654 1.21691 0.98937 0.97833 0.82052 1.45861 1.50288 1.21318 1.18436 1.16797 0.78927 0.84576 0.82504 1.90852 1.57291 1.21928 1.70727 1.20553 1.07782 0.87743 0.96168 1.21090 0.99791 1.00615 0.90444 1.19556 1.05422 0.95246 0.93324 1.98338 1.71223 1.92182 1.38697 1.20577 1.03787 0.93236 0.87024 1.98427 1.97344 1.47396 1.53748 1.42011 1.39876 1.17288 1.12520 0.72628 1.23008 0.92266 1.03208 0.99657 1.22968 0.97167 0.99845 1.03370 1.22781 1.03295 0.94022 0.99156 0.93303 0.78055 0.91088 0.91255 0.75915 0.81578 0.89033 0.89541 0.90011 0.90173 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.52 13.06 55.49 0.72 -24.79 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.24 -5.81 8.63 -15.06 -0.13 -5.94 16 8 H 0.07 1.65 6.91 -52.49 -0.36 1.29 16 9 N -0.72 -15.21 4.54 -53.42 -0.24 -15.45 16 10 C 0.19 3.26 2.70 -67.93 -0.18 3.08 16 11 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 12 C 0.12 1.83 5.21 -4.05 -0.02 1.81 16 13 N -0.71 -10.54 5.38 -61.66 -0.33 -10.88 16 14 C 0.59 9.05 7.78 -12.91 -0.10 8.95 16 15 O -0.53 -9.58 16.88 5.18 0.09 -9.49 16 16 C -0.01 -0.11 7.06 -81.93 -0.58 -0.69 16 17 C -0.09 -1.19 10.64 -39.10 -0.42 -1.61 16 18 C -0.10 -1.24 6.66 -39.90 -0.27 -1.50 16 19 Cl -0.03 -0.36 29.12 -51.86 -1.51 -1.87 16 20 C 0.10 1.19 7.75 -16.75 -0.13 1.06 16 21 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.48 16 22 N -0.52 -6.19 6.01 -6.51 -0.04 -6.23 16 23 H 0.43 4.66 8.19 -40.82 -0.33 4.32 16 24 C -0.16 -2.59 5.36 -90.61 -0.49 -3.07 16 25 C -0.20 -2.77 10.18 -26.69 -0.27 -3.04 16 26 C -0.16 -2.60 9.78 -26.69 -0.26 -2.87 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 9.04 7.80 -40.82 -0.32 8.72 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 5.91 7.26 -40.82 -0.30 5.61 16 32 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 33 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 34 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.97 6.23 -51.93 -0.32 1.65 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -27.44 351.56 -9.62 -37.06 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -4.13 Total: 16.34 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.94 Total: -4.08 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.11 Total: -57.35 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -3.02 Total: -3.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.44 -9.62 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490691623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.966 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds