Wall clock time and date at job start Tue Mar 31 2020 16:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99762 * 2 1 4 4 H 1.48504 * 109.47040 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47088 * 119.99890 * 3 2 1 7 7 C 1.38813 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99332 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99900 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47028 * 34.99581 * 10 9 7 12 12 C 1.52996 * 109.47417 * 154.99853 * 10 9 7 13 13 N 1.46497 * 109.47044 * 304.99648 * 12 10 9 14 14 C 1.34777 * 119.99923 * 179.97438 * 13 12 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.53003 * 109.46854 * 274.99877 * 10 9 7 25 25 C 1.53005 * 117.49846 * 128.74352 * 24 10 9 26 26 C 1.53003 * 117.49973 * 60.08363 * 24 10 9 27 27 H 0.97002 * 119.99961 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00959 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47191 * 184.99863 * 12 10 9 30 30 H 1.09003 * 109.47220 * 64.99933 * 12 10 9 31 31 H 0.97000 * 120.00330 * 0.02562 * 13 12 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.08994 * 115.54949 * 274.41218 * 24 10 9 34 34 H 1.09004 * 117.49644 * 0.02562 * 25 24 10 35 35 H 1.08996 * 117.49604 * 145.01979 * 25 24 10 36 36 H 1.08994 * 117.49908 * 214.98157 * 26 24 10 37 37 H 1.08998 * 117.49603 * 359.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3879 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9684 -3.5507 0.5886 12 6 1.1805 -4.7523 0.6069 13 7 0.7330 -4.3363 1.9383 14 6 -0.0573 -5.1485 2.6679 15 8 -0.3989 -6.2277 2.2207 16 6 -0.5054 -4.7321 3.9996 17 6 -1.3067 -5.4602 4.8547 18 6 -1.4860 -4.6895 6.0071 19 17 -2.4167 -5.1382 7.4021 20 6 -0.7984 -3.5306 5.8444 21 17 -0.7023 -2.2417 7.0034 22 7 -0.1981 -3.5447 4.6279 23 1 0.3548 -2.8370 4.2613 24 6 2.4231 -4.0349 -1.4385 25 6 3.8836 -4.3882 -1.7269 26 6 3.3045 -3.0610 -2.2232 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 1.7554 -5.6748 0.6886 30 1 0.3134 -4.9200 -0.0320 31 1 1.0049 -3.4761 2.2946 32 1 -1.7197 -6.4404 4.6680 33 1 1.6557 -4.5765 -1.9915 34 1 4.5843 -4.3517 -0.8927 35 1 4.0769 -5.1620 -2.4697 36 1 3.1171 -2.9622 -3.2924 37 1 3.6240 -2.1507 -1.7159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490691623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:42 Heat of formation + Delta-G solvation = 13.592606 kcal Electronic energy + Delta-G solvation = -23225.166091 eV Core-core repulsion = 19476.367954 eV Total energy + Delta-G solvation = -3748.798137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62702 -40.40333 -38.96498 -37.90733 -37.52158 -36.17485 -35.22624 -32.89823 -32.22320 -30.79442 -29.28289 -25.79869 -24.61875 -23.18181 -22.99491 -21.89213 -21.59271 -21.19011 -20.22025 -19.12335 -17.47962 -17.08900 -16.92270 -16.59665 -16.05943 -15.91215 -15.83097 -15.39278 -15.19778 -14.91415 -14.81903 -14.46701 -14.31302 -13.72740 -13.00514 -12.98639 -12.94029 -12.83360 -12.67804 -12.49385 -12.43633 -12.25467 -12.03683 -11.98255 -11.73395 -11.41165 -10.99701 -10.89120 -10.76450 -10.25079 -10.12190 -9.38251 -9.00731 -7.89511 -5.16984 0.04533 0.33831 1.00512 1.06385 1.48992 1.51521 1.55860 1.93376 2.15038 2.23027 2.57056 3.08742 3.47291 3.64781 3.72487 3.79113 3.99605 4.16521 4.23760 4.36214 4.40201 4.47268 4.56433 4.67772 4.85939 4.92077 5.02854 5.11635 5.17370 5.24447 5.39698 5.41865 5.49664 5.62335 5.82534 6.29773 6.41353 7.00673 7.39038 8.09552 8.35051 9.32499 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.003503 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.330990 B = 7991.725828 C = 9932.196876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.278 1.278 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.723 5.723 10 C 0.196 3.804 11 H 0.060 0.940 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.590 3.410 15 O -0.560 6.560 16 C -0.023 4.023 17 C -0.090 4.090 18 C -0.108 4.108 19 Cl -0.022 7.022 20 C 0.102 3.898 21 Cl 0.015 6.985 22 N -0.510 5.510 23 H 0.437 0.563 24 C -0.172 4.172 25 C -0.162 4.162 26 C -0.175 4.175 27 H 0.247 0.753 28 H 0.373 0.627 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.407 0.593 32 H 0.174 0.826 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -9.543 11.089 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.204 1.204 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.363 5.363 10 C 0.088 3.912 11 H 0.078 0.922 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.377 3.623 15 O -0.439 6.439 16 C -0.137 4.137 17 C -0.116 4.116 18 C -0.143 4.143 19 Cl 0.007 6.993 20 C -0.044 4.044 21 Cl 0.043 6.957 22 N -0.111 5.111 23 H 0.279 0.721 24 C -0.193 4.193 25 C -0.199 4.199 26 C -0.213 4.213 27 H 0.056 0.944 28 H 0.205 0.795 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.192 0.808 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.784 -9.977 10.878 14.868 hybrid contribution 0.108 2.224 -0.117 2.229 sum 1.892 -7.753 10.761 13.397 Atomic orbital electron populations 1.69780 1.06300 1.25635 1.59764 1.25283 0.95931 1.00132 1.04344 0.85500 0.77285 0.80646 0.78015 1.21179 1.23182 1.20368 1.19395 0.91123 0.84546 1.40080 0.90514 1.42565 1.05291 1.00318 1.88098 1.20171 0.94122 0.84659 0.92296 0.92195 1.21590 0.98363 0.97785 0.81977 1.45811 1.50184 1.21303 1.18224 1.16940 0.78363 0.84071 0.82946 1.90831 1.58417 1.23116 1.71584 1.20275 1.09008 0.88683 0.95772 1.21264 0.99128 1.00878 0.90378 1.19629 1.05707 0.95267 0.93666 1.98342 1.70904 1.92107 1.37950 1.20729 1.03164 0.93487 0.87032 1.98435 1.97258 1.46787 1.53179 1.41958 1.39761 1.16992 1.12428 0.72077 1.22925 0.93957 1.03784 0.98666 1.23035 0.95204 0.98215 1.03492 1.22729 1.04956 0.94332 0.99256 0.94409 0.79481 0.89403 0.92377 0.75706 0.80839 0.88717 0.88510 0.87627 0.89792 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.93 13.06 21.65 0.28 -53.65 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 3 Si 0.95 42.55 29.55 68.60 2.03 44.58 16 4 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.22 -10.39 8.63 84.03 0.73 -9.67 16 8 H 0.08 3.51 6.91 -2.91 -0.02 3.49 16 9 N -0.72 -30.37 4.54 -322.93 -1.47 -31.84 16 10 C 0.20 6.40 2.70 44.99 0.12 6.52 16 11 H 0.06 1.93 7.84 -2.38 -0.02 1.91 16 12 C 0.13 3.76 5.21 86.38 0.45 4.21 16 13 N -0.71 -20.50 5.38 -467.21 -2.52 -23.01 16 14 C 0.59 17.88 7.78 86.41 0.67 18.55 16 15 O -0.56 -19.97 16.88 -4.38 -0.07 -20.04 16 16 C -0.02 -0.61 7.06 40.31 0.28 -0.32 16 17 C -0.09 -2.22 10.64 22.58 0.24 -1.98 16 18 C -0.11 -2.52 6.66 22.06 0.15 -2.37 16 19 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.53 16 20 C 0.10 2.33 7.75 83.52 0.65 2.97 16 21 Cl 0.01 0.30 29.13 -2.72 -0.08 0.22 16 22 N -0.51 -11.78 6.01 -174.50 -1.05 -12.83 16 23 H 0.44 9.08 8.19 -92.71 -0.76 8.32 16 24 C -0.17 -5.27 5.36 -10.79 -0.06 -5.32 16 25 C -0.16 -4.08 10.18 30.62 0.31 -3.77 16 26 C -0.18 -5.62 9.78 30.62 0.30 -5.32 16 27 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.37 17.62 7.80 -92.71 -0.72 16.90 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.41 11.61 7.26 -92.71 -0.67 10.94 16 32 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 34 H 0.10 2.27 8.05 -2.39 -0.02 2.25 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.08 2.97 6.23 -2.39 -0.01 2.96 16 Total: -1.00 -57.68 351.56 0.36 -57.32 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -1.00 Total: 39.09 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.31 Total: 0.68 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -4.75 Total: -121.32 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.04 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -57.68 0.36 -57.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490691623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.914 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds