Wall clock time and date at job start Tue Mar 31 2020 16:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47340 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.47085 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.46936 * 150.00384 * 3 2 1 7 7 C 1.38807 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00407 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99993 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47295 * 324.99788 * 10 9 7 12 12 C 1.52996 * 109.47296 * 204.99799 * 10 9 7 13 13 N 1.46497 * 109.47044 * 54.99765 * 12 10 9 14 14 C 1.34777 * 119.99923 * 179.97438 * 13 12 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.52999 * 109.47102 * 84.99564 * 10 9 7 25 25 C 1.53007 * 117.49876 * 8.75249 * 24 10 9 26 26 C 1.53005 * 117.50299 * 300.09045 * 24 10 9 27 27 H 0.97002 * 120.00224 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00007 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47191 * 294.99980 * 12 10 9 30 30 H 1.09003 * 109.47220 * 175.00050 * 12 10 9 31 31 H 0.97000 * 120.00330 * 0.02562 * 13 12 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.09002 * 115.55106 * 154.41353 * 24 10 9 34 34 H 1.09002 * 117.49621 * 359.97438 * 25 24 10 35 35 H 1.08995 * 117.50188 * 145.01823 * 25 24 10 36 36 H 1.08988 * 117.49967 * 214.97792 * 26 24 10 37 37 H 1.08997 * 117.49397 * 359.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9688 -3.5506 -0.5900 12 6 1.1809 -4.7521 -0.6101 13 7 0.7343 -4.3355 -1.9416 14 6 -0.0547 -5.1478 -2.6725 15 8 -0.3965 -6.2272 -2.2261 16 6 -0.5011 -4.7312 -4.0047 17 6 -1.3113 -5.4540 -4.8560 18 6 -1.4808 -4.6874 -6.0127 19 17 -2.4121 -5.1347 -7.4078 20 6 -0.7928 -3.5289 -5.8492 21 17 -0.6967 -2.2391 -7.0072 22 7 -0.1931 -3.5437 -4.6324 23 1 0.3605 -2.8367 -4.2657 24 6 2.4221 -4.0355 1.4365 25 6 1.8134 -3.1985 2.5634 26 6 3.2996 -3.0601 2.2236 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 0.3134 -4.9201 0.0281 30 1 1.7559 -5.6746 -0.6918 31 1 1.0069 -3.4754 -2.2976 32 1 -1.7333 -6.4296 -4.6657 33 1 2.5633 -5.1006 1.6205 34 1 1.1540 -2.3778 2.2810 35 1 1.5547 -3.7128 3.4889 36 1 4.0178 -3.4834 2.9256 37 1 3.6179 -2.1488 1.7175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490691631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:46 Heat of formation + Delta-G solvation = 32.982759 kcal Electronic energy + Delta-G solvation = -23346.745814 eV Core-core repulsion = 19598.788497 eV Total energy + Delta-G solvation = -3747.957317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60727 -39.16410 -37.67531 -36.97292 -36.60213 -34.70864 -33.40259 -31.46734 -30.97080 -29.54504 -27.97884 -24.21708 -23.31781 -22.12886 -21.54174 -20.88202 -20.42085 -19.64849 -18.75910 -17.36879 -16.37263 -15.80921 -15.67766 -15.19696 -14.88543 -14.75178 -14.47275 -14.08780 -13.83023 -13.61478 -13.47237 -13.14744 -12.99107 -12.24366 -12.09770 -11.90154 -11.58814 -11.42149 -11.27714 -11.06013 -11.00097 -10.95109 -10.61385 -10.22796 -10.12443 -9.79215 -9.55641 -9.27287 -9.20110 -9.10947 -8.92447 -8.37510 -7.20692 -5.96254 -3.27370 1.10313 1.30055 1.94789 2.06831 3.01071 3.28506 3.30349 3.35326 3.36897 3.38230 4.38692 4.54122 4.67703 4.78961 5.21242 5.27184 5.35007 5.44620 5.46707 5.64411 5.74964 5.86269 5.92346 5.94507 6.04576 6.24807 6.29957 6.31911 6.52933 6.58942 6.70949 6.79214 6.91398 7.19554 7.53981 7.63169 8.20188 8.23402 9.33164 9.85730 10.21997 11.24723 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.003496 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.107930 B = 8006.798656 C = 9879.483069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.119 3.881 13 N -0.708 5.708 14 C 0.586 3.414 15 O -0.531 6.531 16 C -0.008 4.008 17 C -0.093 4.093 18 C -0.101 4.101 19 Cl -0.033 7.033 20 C 0.099 3.901 21 Cl 0.002 6.998 22 N -0.516 5.516 23 H 0.433 0.567 24 C -0.178 4.178 25 C -0.162 4.162 26 C -0.175 4.175 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.405 0.595 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -8.360 -10.358 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.080 3.920 11 H 0.075 0.925 12 C -0.005 4.005 13 N -0.359 5.359 14 C 0.372 3.628 15 O -0.408 6.408 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.136 4.136 19 Cl -0.004 7.004 20 C -0.046 4.046 21 Cl 0.031 6.969 22 N -0.117 5.117 23 H 0.274 0.726 24 C -0.200 4.200 25 C -0.200 4.200 26 C -0.212 4.212 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.241 0.759 32 H 0.184 0.816 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.012 -8.784 -10.132 13.410 hybrid contribution 0.516 1.987 -0.090 2.055 sum 0.505 -6.797 -10.223 12.286 Atomic orbital electron populations 1.69651 1.05024 1.25908 1.56824 1.24711 0.95406 0.97571 1.02566 0.86281 0.78836 0.84080 0.77505 1.21782 1.21774 1.20700 1.19161 0.90938 0.83745 1.43656 0.91008 1.42499 1.05836 0.99497 1.88217 1.20007 0.94018 0.85980 0.91948 0.92454 1.21675 0.99134 0.97703 0.81976 1.45867 1.50326 1.21293 1.18393 1.16799 0.78946 0.84586 0.82489 1.90852 1.57248 1.21923 1.70794 1.20558 1.07606 0.87854 0.96226 1.21090 0.99677 1.00747 0.90434 1.19556 1.05407 0.95353 0.93234 1.98338 1.71192 1.92219 1.38695 1.20577 1.03893 0.93187 0.86973 1.98427 1.97351 1.47298 1.53843 1.42009 1.39896 1.17234 1.12550 0.72634 1.23047 1.06114 0.95445 0.95378 1.22919 0.96700 1.03461 0.96873 1.22851 0.93520 1.01818 1.02999 0.93338 0.77931 0.91140 0.91296 0.75934 0.81585 0.89516 0.86359 0.91212 0.90967 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.03 13.06 55.49 0.72 -24.31 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 20.47 29.55 -169.99 -5.02 15.44 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.24 -5.72 8.15 -15.06 -0.12 -5.84 16 8 H 0.07 1.67 6.91 -52.49 -0.36 1.31 16 9 N -0.72 -14.79 3.08 -53.43 -0.16 -14.96 16 10 C 0.19 3.22 2.86 -67.93 -0.19 3.02 16 11 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 12 C 0.12 1.82 5.22 -4.05 -0.02 1.80 16 13 N -0.71 -10.47 5.38 -61.66 -0.33 -10.80 16 14 C 0.59 9.02 7.78 -12.91 -0.10 8.92 16 15 O -0.53 -9.58 16.88 5.18 0.09 -9.50 16 16 C -0.01 -0.11 7.06 -81.93 -0.58 -0.68 16 17 C -0.09 -1.20 10.64 -39.10 -0.42 -1.61 16 18 C -0.10 -1.24 6.66 -39.90 -0.27 -1.50 16 19 Cl -0.03 -0.36 29.12 -51.86 -1.51 -1.88 16 20 C 0.10 1.19 7.75 -16.75 -0.13 1.06 16 21 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.49 16 22 N -0.52 -6.17 6.01 -6.51 -0.04 -6.21 16 23 H 0.43 4.64 8.19 -40.82 -0.33 4.30 16 24 C -0.18 -2.89 5.71 -90.61 -0.52 -3.41 16 25 C -0.16 -2.88 9.74 -26.69 -0.26 -3.14 16 26 C -0.17 -2.96 9.87 -26.69 -0.26 -3.22 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.39 8.84 7.80 -40.82 -0.32 8.52 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 5.85 7.26 -40.82 -0.30 5.56 16 32 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 33 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 34 H 0.12 2.53 6.68 -51.93 -0.35 2.19 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.07 8.14 -51.94 -0.42 0.65 16 37 H 0.10 1.95 6.22 -51.93 -0.32 1.62 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -26.65 348.65 -9.55 -36.20 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -4.07 Total: 17.07 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.96 Total: -4.85 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.19 Total: -56.27 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -3.02 Total: -3.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.65 -9.55 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490691631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.184 kcal (2) G-P(sol) polarization free energy of solvation -26.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds