Wall clock time and date at job start Tue Mar 31 2020 16:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47340 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.47085 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.46936 * 150.00384 * 3 2 1 7 7 C 1.38807 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00407 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99993 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47295 * 324.99788 * 10 9 7 12 12 C 1.52996 * 109.47296 * 204.99799 * 10 9 7 13 13 N 1.46497 * 109.47044 * 54.99765 * 12 10 9 14 14 C 1.34777 * 119.99923 * 179.97438 * 13 12 10 15 15 O 1.21711 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46547 * 119.99880 * 180.02562 * 14 13 12 17 17 C 1.37965 * 126.21913 * 180.33166 * 16 14 13 18 18 C 1.39794 * 107.12632 * 180.10979 * 17 16 14 19 19 Cl 1.73599 * 126.06513 * 179.87892 * 18 17 16 20 20 C 1.35725 * 107.87482 * 359.61273 * 18 17 16 21 21 Cl 1.73601 * 125.58661 * 180.26342 * 20 18 17 22 22 N 1.35669 * 108.83080 * 0.24024 * 20 18 17 23 23 H 0.97001 * 125.69464 * 179.97438 * 22 20 18 24 24 C 1.52999 * 109.47102 * 84.99564 * 10 9 7 25 25 C 1.53007 * 117.49876 * 8.75249 * 24 10 9 26 26 C 1.53005 * 117.50299 * 300.09045 * 24 10 9 27 27 H 0.97002 * 120.00224 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00007 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47191 * 294.99980 * 12 10 9 30 30 H 1.09003 * 109.47220 * 175.00050 * 12 10 9 31 31 H 0.97000 * 120.00330 * 0.02562 * 13 12 10 32 32 H 1.07992 * 126.44267 * 359.97438 * 17 16 14 33 33 H 1.09002 * 115.55106 * 154.41353 * 24 10 9 34 34 H 1.09002 * 117.49621 * 359.97438 * 25 24 10 35 35 H 1.08995 * 117.50188 * 145.01823 * 25 24 10 36 36 H 1.08988 * 117.49967 * 214.97792 * 26 24 10 37 37 H 1.08997 * 117.49397 * 359.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9688 -3.5506 -0.5900 12 6 1.1809 -4.7521 -0.6101 13 7 0.7343 -4.3355 -1.9416 14 6 -0.0547 -5.1478 -2.6725 15 8 -0.3965 -6.2272 -2.2261 16 6 -0.5011 -4.7312 -4.0047 17 6 -1.3113 -5.4540 -4.8560 18 6 -1.4808 -4.6874 -6.0127 19 17 -2.4121 -5.1347 -7.4078 20 6 -0.7928 -3.5289 -5.8492 21 17 -0.6967 -2.2391 -7.0072 22 7 -0.1931 -3.5437 -4.6324 23 1 0.3605 -2.8367 -4.2657 24 6 2.4221 -4.0355 1.4365 25 6 1.8134 -3.1985 2.5634 26 6 3.2996 -3.0601 2.2236 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 0.3134 -4.9201 0.0281 30 1 1.7559 -5.6746 -0.6918 31 1 1.0069 -3.4754 -2.2976 32 1 -1.7333 -6.4296 -4.6657 33 1 2.5633 -5.1006 1.6205 34 1 1.1540 -2.3778 2.2810 35 1 1.5547 -3.7128 3.4889 36 1 4.0178 -3.4834 2.9256 37 1 3.6179 -2.1488 1.7175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490691631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:45 Heat of formation + Delta-G solvation = 17.676865 kcal Electronic energy + Delta-G solvation = -23347.409527 eV Core-core repulsion = 19598.788497 eV Total energy + Delta-G solvation = -3748.621030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62421 -40.41202 -39.08594 -37.90737 -37.52121 -36.01471 -35.10583 -32.81477 -32.20495 -30.80681 -29.35666 -25.77390 -24.79264 -23.36007 -22.87866 -21.88877 -21.52912 -20.90492 -20.05536 -19.12500 -17.51318 -17.11096 -16.88202 -16.50098 -16.33475 -15.88450 -15.78739 -15.42869 -15.19425 -14.94679 -14.57638 -14.48204 -14.32452 -13.72196 -13.01056 -12.99501 -12.87661 -12.82831 -12.66944 -12.59626 -12.49302 -12.13105 -11.98752 -11.95134 -11.60657 -11.38462 -11.03338 -10.84624 -10.61392 -10.24162 -10.11533 -9.38004 -9.00360 -7.89610 -5.16998 0.04854 0.33960 1.00646 1.06526 1.47405 1.51565 1.56411 1.93921 2.15840 2.23696 2.57337 3.14358 3.45567 3.65047 3.73652 3.87104 3.98528 4.21774 4.29530 4.34931 4.47501 4.51018 4.58768 4.67669 4.92522 4.98526 5.03032 5.18947 5.20853 5.25840 5.38890 5.48999 5.67378 5.69584 5.82820 6.30355 6.42341 7.01656 7.39653 8.09889 8.35214 9.32209 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.003496 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.107930 B = 8006.798656 C = 9879.483069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.290 1.290 5 H -0.307 1.307 6 H -0.275 1.275 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.192 3.808 11 H 0.063 0.937 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.590 3.410 15 O -0.560 6.560 16 C -0.023 4.023 17 C -0.090 4.090 18 C -0.108 4.108 19 Cl -0.022 7.022 20 C 0.101 3.899 21 Cl 0.015 6.985 22 N -0.510 5.510 23 H 0.437 0.563 24 C -0.167 4.167 25 C -0.174 4.174 26 C -0.171 4.171 27 H 0.246 0.754 28 H 0.374 0.626 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.407 0.593 32 H 0.174 0.826 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -9.387 -10.835 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.217 1.217 5 H -0.235 1.235 6 H -0.200 1.200 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.083 3.917 11 H 0.081 0.919 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.377 3.623 15 O -0.440 6.440 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.143 4.143 19 Cl 0.007 6.993 20 C -0.044 4.044 21 Cl 0.043 6.957 22 N -0.111 5.111 23 H 0.279 0.721 24 C -0.188 4.188 25 C -0.211 4.211 26 C -0.208 4.208 27 H 0.055 0.945 28 H 0.207 0.793 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.243 0.757 32 H 0.191 0.809 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.249 -9.826 -10.611 14.516 hybrid contribution 0.171 2.248 0.019 2.255 sum 1.419 -7.577 -10.592 13.101 Atomic orbital electron populations 1.69780 1.06196 1.25491 1.59779 1.25227 0.95865 0.99941 1.04374 0.85468 0.77825 0.81245 0.77151 1.21725 1.23477 1.19973 1.19396 0.91103 0.84492 1.39969 0.90566 1.42545 1.05291 1.00244 1.87971 1.20153 0.94027 0.84756 0.92806 0.91868 1.21577 0.98523 0.97705 0.81878 1.45813 1.50207 1.21280 1.18187 1.16933 0.78391 0.84084 0.82920 1.90831 1.58378 1.23114 1.71645 1.20285 1.08799 0.88776 0.95844 1.21263 0.99050 1.01002 0.90384 1.19630 1.05690 0.95379 0.93570 1.98342 1.70878 1.92146 1.37961 1.20727 1.03285 0.93434 0.86992 1.98435 1.97267 1.46700 1.53290 1.41955 1.39777 1.16941 1.12451 0.72074 1.23059 1.04831 0.96850 0.94037 1.22776 0.96735 1.03123 0.98504 1.22835 0.93390 1.01194 1.03393 0.94453 0.79307 0.92355 0.89365 0.75708 0.80860 0.86521 0.90410 0.89232 0.88207 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.08 13.06 21.65 0.28 -52.80 16 2 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 3 Si 0.95 42.40 29.55 68.60 2.03 44.42 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.22 -10.11 8.15 84.03 0.69 -9.42 16 8 H 0.08 3.46 6.91 -2.91 -0.02 3.44 16 9 N -0.72 -29.41 3.08 -322.94 -0.99 -30.40 16 10 C 0.19 6.13 2.86 44.99 0.13 6.26 16 11 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 12 C 0.13 3.69 5.22 86.38 0.45 4.14 16 13 N -0.70 -20.18 5.38 -467.21 -2.52 -22.70 16 14 C 0.59 17.72 7.78 86.41 0.67 18.40 16 15 O -0.56 -19.85 16.88 -4.38 -0.07 -19.92 16 16 C -0.02 -0.59 7.06 40.31 0.28 -0.31 16 17 C -0.09 -2.23 10.64 22.58 0.24 -1.99 16 18 C -0.11 -2.52 6.66 22.06 0.15 -2.37 16 19 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.53 16 20 C 0.10 2.32 7.75 83.52 0.65 2.96 16 21 Cl 0.01 0.30 29.13 -2.72 -0.08 0.22 16 22 N -0.51 -11.71 6.01 -174.50 -1.05 -12.76 16 23 H 0.44 9.01 8.19 -92.71 -0.76 8.25 16 24 C -0.17 -5.00 5.71 -10.79 -0.06 -5.06 16 25 C -0.17 -5.96 9.74 30.62 0.30 -5.66 16 26 C -0.17 -5.40 9.87 30.62 0.30 -5.10 16 27 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.37 17.31 7.80 -92.71 -0.72 16.59 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.41 11.43 7.26 -92.71 -0.67 10.76 16 32 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 34 H 0.08 3.36 6.68 -2.39 -0.02 3.35 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.87 6.22 -2.39 -0.01 2.85 16 Total: -1.00 -56.58 348.65 0.79 -55.80 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -1.00 Total: 39.46 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 4.26 Total: -0.79 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.27 Total: -118.66 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.07 Total: -19.92 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.31 kcal Total: -56.58 0.79 -55.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490691631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.475 kcal (2) G-P(sol) polarization free energy of solvation -56.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds