Wall clock time and date at job start Tue Mar 31 2020 17:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.36936 * 119.99461 * 275.31127 * 3 2 1 5 5 H 1.07989 * 120.00499 * 37.57844 * 4 3 2 6 6 C 1.38819 * 119.99399 * 217.57863 * 4 3 2 7 7 N 1.31613 * 119.99968 * 21.42511 * 6 4 3 8 8 Si 1.86800 * 119.99621 * 201.42891 * 6 4 3 9 9 H 1.48499 * 109.47195 * 89.99883 * 8 6 4 10 10 H 1.48501 * 109.46991 * 209.99633 * 8 6 4 11 11 H 1.48498 * 109.47485 * 329.99730 * 8 6 4 12 12 C 1.46497 * 120.00093 * 95.30974 * 3 2 1 13 13 C 1.53004 * 109.47020 * 270.00061 * 12 3 2 14 14 N 1.46498 * 109.46641 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99844 * 180.02562 * 14 13 12 16 16 O 1.21535 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.47998 * 120.00361 * 179.97438 * 15 14 13 18 18 C 1.39975 * 120.94138 * 269.99905 * 17 15 14 19 19 Cl 1.73597 * 120.50887 * 0.25130 * 18 17 15 20 20 C 1.38288 * 118.97884 * 179.97438 * 18 17 15 21 21 N 1.31793 * 120.91473 * 0.02562 * 20 18 17 22 22 C 1.31786 * 122.09827 * 359.97421 * 21 20 18 23 23 C 1.38304 * 120.91127 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.50854 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47012 * 59.99858 * 1 2 3 26 26 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46633 * 300.00464 * 1 2 3 28 28 H 1.09000 * 109.46633 * 239.99535 * 2 1 3 29 29 H 1.09003 * 109.46511 * 120.00058 * 2 1 3 30 30 H 0.97005 * 120.00034 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47306 * 149.99771 * 12 3 2 32 32 H 1.09000 * 109.47146 * 29.99801 * 12 3 2 33 33 H 1.08999 * 109.47032 * 59.99956 * 13 12 3 34 34 H 1.09000 * 109.46949 * 299.99860 * 13 12 3 35 35 H 0.96995 * 120.00804 * 359.97438 * 14 13 12 36 36 H 1.08004 * 119.54559 * 180.02562 * 20 18 17 37 37 H 1.08000 * 119.54924 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4551 4.5694 -3.1909 11 1 2.2168 3.8357 -3.7672 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4978 3.3902 3.0994 15 6 0.5652 4.0770 3.7888 16 8 -0.5702 4.1558 3.3625 17 6 0.9237 4.7352 5.0650 18 6 0.8042 4.0564 6.2833 19 17 0.2363 2.4165 6.3265 20 6 1.1511 4.7103 7.4514 21 7 1.5879 5.9535 7.4274 22 6 1.7156 6.6293 6.3032 23 6 1.3928 6.0538 5.0877 24 17 1.5644 6.9538 3.6132 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0490 3.4030 -0.7830 31 1 3.1618 2.7640 1.0860 32 1 2.7256 1.2833 1.9721 33 1 0.3542 2.0069 2.0138 34 1 0.7904 3.4876 1.1276 35 1 2.4038 3.3271 3.4400 36 1 1.0629 4.1951 8.3965 37 1 2.0772 7.6465 6.3314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493008610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:01 Heat of formation + Delta-G solvation = 6.942817 kcal Electronic energy + Delta-G solvation = -23615.627367 eV Core-core repulsion = 19866.540874 eV Total energy + Delta-G solvation = -3749.086493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94862 -39.10906 -37.17147 -36.89397 -36.37451 -34.24366 -32.96829 -31.92684 -31.43854 -29.69681 -27.72454 -25.31780 -24.11071 -24.05851 -21.97519 -20.80234 -20.30077 -18.38673 -17.60728 -17.05502 -16.64357 -15.99290 -15.50918 -15.11373 -14.96863 -14.81693 -14.59443 -13.86811 -13.77764 -13.50700 -13.01339 -12.74283 -12.57627 -12.43096 -12.20116 -12.09511 -11.89758 -11.57463 -11.31967 -11.16314 -10.81761 -10.71584 -10.59797 -10.51173 -10.17256 -10.04248 -9.94474 -9.85343 -9.67734 -9.33381 -8.72125 -8.53147 -6.67830 -5.88137 -3.46989 0.26469 0.28310 1.36892 1.74701 2.49714 2.94145 3.14381 3.33041 3.40304 3.42416 3.86546 4.18564 4.28371 4.40609 4.47981 4.62098 5.07068 5.23488 5.23910 5.48639 5.72439 5.93466 6.02194 6.10074 6.33437 6.35333 6.44823 6.63514 6.67078 6.87904 6.93020 7.12498 7.16908 7.45987 7.65022 7.76792 8.23504 8.43682 9.09883 9.71637 10.29499 11.12034 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.004124 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.324893 B = 6787.886769 C = 8288.408781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.578 5.578 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.699 5.699 15 C 0.556 3.444 16 O -0.516 6.516 17 C -0.059 4.059 18 C -0.055 4.055 19 Cl -0.024 7.024 20 C 0.118 3.882 21 N -0.447 5.447 22 C 0.119 3.881 23 C -0.055 4.055 24 Cl -0.018 7.018 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.178 0.822 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 4.014 16.676 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.349 5.349 15 C 0.337 3.663 16 O -0.392 6.392 17 C -0.072 4.072 18 C -0.085 4.085 19 Cl 0.005 6.995 20 C -0.040 4.040 21 N -0.155 5.155 22 C -0.039 4.039 23 C -0.085 4.085 24 Cl 0.011 6.989 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.195 0.805 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.842 4.428 16.923 17.910 hybrid contribution 0.066 0.338 -1.347 1.390 sum -3.776 4.766 15.576 16.721 Atomic orbital electron populations 1.22392 0.99884 0.99127 1.01389 1.20887 0.91761 0.86910 0.98944 1.43605 1.75994 1.08278 1.02008 1.19039 1.04840 1.21352 0.93960 0.91992 1.25173 0.94111 1.01132 0.98079 1.69989 1.03158 1.37177 1.42507 0.86408 0.76997 0.82595 0.81534 1.21212 1.21648 1.20095 1.21059 0.94403 0.97023 0.86525 1.22629 1.01536 0.96612 0.81948 1.46086 1.12694 1.51772 1.24323 1.17741 0.86075 0.79568 0.82878 1.90839 1.19675 1.60382 1.68267 1.20493 0.97963 0.93504 0.95214 1.22154 1.02643 0.89617 0.94106 1.98440 1.86838 1.15619 1.98585 1.22920 0.93663 0.90316 0.97103 1.67844 1.11916 1.07233 1.28523 1.22940 0.95193 1.00633 0.85135 1.22209 1.02560 0.92548 0.91218 1.98465 1.95582 1.73015 1.31861 0.93072 0.94418 0.93705 0.93512 0.94714 0.93472 0.88292 0.95169 0.92523 0.91300 0.76683 0.80463 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.21 37.16 0.38 -2.68 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -13.73 2.43 -173.24 -0.42 -14.15 16 4 C -0.26 -6.92 9.45 -15.06 -0.14 -7.06 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 6 C 0.02 0.42 4.95 -17.43 -0.09 0.33 16 7 N -0.89 -24.28 11.47 55.49 0.64 -23.65 16 8 Si 0.90 21.15 29.60 -169.99 -5.03 16.12 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.14 2.97 5.45 -4.04 -0.02 2.95 16 13 C 0.10 1.91 6.00 -4.04 -0.02 1.89 16 14 N -0.70 -11.59 5.55 -61.20 -0.34 -11.93 16 15 C 0.56 9.32 5.63 -12.26 -0.07 9.25 16 16 O -0.52 -10.50 17.10 5.33 0.09 -10.41 16 17 C -0.06 -0.80 5.67 -104.60 -0.59 -1.39 16 18 C -0.06 -0.63 6.38 -38.91 -0.25 -0.88 16 19 Cl -0.02 -0.28 28.17 -51.86 -1.46 -1.74 16 20 C 0.12 1.10 10.98 -17.55 -0.19 0.91 16 21 N -0.45 -4.47 10.33 -13.24 -0.14 -4.61 16 22 C 0.12 1.16 10.98 -17.55 -0.19 0.96 16 23 C -0.06 -0.67 6.38 -38.91 -0.25 -0.92 16 24 Cl -0.02 -0.24 28.17 -51.86 -1.46 -1.70 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 28 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 31 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 32 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 33 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.40 5.79 8.46 -40.82 -0.35 5.44 16 36 H 0.18 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -30.13 350.48 -8.53 -38.66 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.22 Total: 1.90 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.47 Total: 6.22 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.26 Total: -54.33 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -2.92 Total: -3.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.13 -8.53 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493008610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.603 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds