Wall clock time and date at job start Tue Mar 31 2020 17:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.36936 * 119.99461 * 275.31127 * 3 2 1 5 5 H 1.07989 * 120.00499 * 37.57844 * 4 3 2 6 6 C 1.38819 * 119.99399 * 217.57863 * 4 3 2 7 7 N 1.31613 * 119.99968 * 21.42511 * 6 4 3 8 8 Si 1.86800 * 119.99621 * 201.42891 * 6 4 3 9 9 H 1.48499 * 109.47195 * 89.99883 * 8 6 4 10 10 H 1.48501 * 109.46991 * 209.99633 * 8 6 4 11 11 H 1.48498 * 109.47485 * 329.99730 * 8 6 4 12 12 C 1.46497 * 120.00093 * 95.30974 * 3 2 1 13 13 C 1.53004 * 109.47020 * 270.00061 * 12 3 2 14 14 N 1.46498 * 109.46641 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99844 * 180.02562 * 14 13 12 16 16 O 1.21535 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.47998 * 120.00361 * 179.97438 * 15 14 13 18 18 C 1.39975 * 120.94138 * 269.99905 * 17 15 14 19 19 Cl 1.73597 * 120.50887 * 0.25130 * 18 17 15 20 20 C 1.38288 * 118.97884 * 179.97438 * 18 17 15 21 21 N 1.31793 * 120.91473 * 0.02562 * 20 18 17 22 22 C 1.31786 * 122.09827 * 359.97421 * 21 20 18 23 23 C 1.38304 * 120.91127 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.50854 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47012 * 59.99858 * 1 2 3 26 26 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46633 * 300.00464 * 1 2 3 28 28 H 1.09000 * 109.46633 * 239.99535 * 2 1 3 29 29 H 1.09003 * 109.46511 * 120.00058 * 2 1 3 30 30 H 0.97005 * 120.00034 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47306 * 149.99771 * 12 3 2 32 32 H 1.09000 * 109.47146 * 29.99801 * 12 3 2 33 33 H 1.08999 * 109.47032 * 59.99956 * 13 12 3 34 34 H 1.09000 * 109.46949 * 299.99860 * 13 12 3 35 35 H 0.96995 * 120.00804 * 359.97438 * 14 13 12 36 36 H 1.08004 * 119.54559 * 180.02562 * 20 18 17 37 37 H 1.08000 * 119.54924 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4551 4.5694 -3.1909 11 1 2.2168 3.8357 -3.7672 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4978 3.3902 3.0994 15 6 0.5652 4.0770 3.7888 16 8 -0.5702 4.1558 3.3625 17 6 0.9237 4.7352 5.0650 18 6 0.8042 4.0564 6.2833 19 17 0.2363 2.4165 6.3265 20 6 1.1511 4.7103 7.4514 21 7 1.5879 5.9535 7.4274 22 6 1.7156 6.6293 6.3032 23 6 1.3928 6.0538 5.0877 24 17 1.5644 6.9538 3.6132 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.0490 3.4030 -0.7830 31 1 3.1618 2.7640 1.0860 32 1 2.7256 1.2833 1.9721 33 1 0.3542 2.0069 2.0138 34 1 0.7904 3.4876 1.1276 35 1 2.4038 3.3271 3.4400 36 1 1.0629 4.1951 8.3965 37 1 2.0772 7.6465 6.3314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493008610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:00 Heat of formation + Delta-G solvation = -11.733187 kcal Electronic energy + Delta-G solvation = -23616.437219 eV Core-core repulsion = 19866.540874 eV Total energy + Delta-G solvation = -3749.896346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93015 -40.39461 -38.14262 -38.09814 -37.81383 -35.79027 -33.99698 -33.82469 -32.27170 -31.32158 -29.42099 -26.67949 -25.71229 -24.90953 -23.50027 -22.24650 -21.94450 -19.63081 -18.54556 -18.48975 -17.93403 -17.37257 -17.04219 -16.50768 -16.22148 -15.82073 -15.79528 -15.54735 -15.43086 -14.93678 -14.40968 -14.12061 -13.85467 -13.67450 -13.61731 -13.25863 -13.09096 -13.03885 -12.83360 -12.66377 -12.41826 -12.31806 -12.26683 -12.06384 -11.76262 -11.71201 -11.46182 -11.02923 -10.86380 -10.56874 -10.21117 -10.17530 -8.61705 -7.87512 -5.50215 -0.66860 -0.55262 0.45588 0.83052 1.18382 1.42174 1.46770 1.52995 1.83008 2.16190 2.48004 3.10537 3.17541 3.24393 3.31542 3.45343 3.77109 3.79486 4.10499 4.28538 4.38006 4.45907 4.48914 4.70210 4.80608 4.83854 4.98136 5.07945 5.13443 5.25363 5.28567 5.55782 5.63790 5.72297 6.26468 6.36004 6.44840 6.89341 7.14028 7.81026 8.33234 9.08476 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.004124 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.324893 B = 6787.886769 C = 8288.408781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.596 5.596 4 C -0.271 4.271 5 H 0.053 0.947 6 C -0.024 4.024 7 N -0.909 5.909 8 Si 0.946 3.054 9 H -0.290 1.290 10 H -0.289 1.289 11 H -0.271 1.271 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.694 5.694 15 C 0.561 3.439 16 O -0.556 6.556 17 C -0.077 4.077 18 C -0.060 4.060 19 Cl -0.027 7.027 20 C 0.135 3.865 21 N -0.447 5.447 22 C 0.135 3.865 23 C -0.065 4.065 24 Cl -0.035 7.035 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.411 0.589 36 H 0.213 0.787 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 4.184 18.667 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.317 5.317 4 C -0.401 4.401 5 H 0.070 0.930 6 C -0.222 4.222 7 N -0.552 5.552 8 Si 0.775 3.225 9 H -0.217 1.217 10 H -0.215 1.215 11 H -0.196 1.196 12 C 0.018 3.982 13 C -0.005 4.005 14 N -0.344 5.344 15 C 0.345 3.655 16 O -0.435 6.435 17 C -0.089 4.089 18 C -0.090 4.090 19 Cl 0.002 6.998 20 C -0.022 4.022 21 N -0.155 5.155 22 C -0.023 4.023 23 C -0.094 4.094 24 Cl -0.006 7.006 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.246 0.754 36 H 0.230 0.770 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.831 4.588 18.935 19.856 hybrid contribution 0.055 0.243 -1.872 1.888 sum -3.776 4.831 17.064 18.132 Atomic orbital electron populations 1.22221 0.97966 1.00866 1.00403 1.21015 0.93154 0.85362 0.99314 1.43835 1.76345 1.09624 1.01897 1.19167 1.04409 1.21806 0.94740 0.92977 1.25702 0.93980 1.02670 0.99862 1.70073 1.03533 1.37800 1.43802 0.85605 0.76825 0.80232 0.79854 1.21689 1.21508 1.19593 1.20914 0.94215 0.96801 0.86275 1.22074 1.00369 0.95473 0.82536 1.45908 1.13453 1.51650 1.23358 1.18108 0.85174 0.78626 0.83570 1.90811 1.21328 1.61700 1.69638 1.20263 1.00186 0.94363 0.94136 1.22257 1.03140 0.89615 0.93974 1.98441 1.86926 1.15825 1.98563 1.23467 0.91333 0.89898 0.97520 1.68003 1.11908 1.07420 1.28199 1.23403 0.93354 1.01591 0.83934 1.22312 1.03649 0.92015 0.91471 1.98460 1.95744 1.73285 1.33082 0.94657 0.91269 0.94013 0.94438 0.92977 0.93680 0.90803 0.93581 0.92641 0.94599 0.75354 0.77026 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 10.21 71.98 0.73 -4.74 16 2 C 0.14 5.51 6.44 86.38 0.56 6.07 16 3 N -0.60 -28.46 2.43 -702.00 -1.71 -30.17 16 4 C -0.27 -14.49 9.45 84.04 0.79 -13.69 16 5 H 0.05 2.84 7.92 -2.92 -0.02 2.82 16 6 C -0.02 -1.28 4.95 84.86 0.42 -0.86 16 7 N -0.91 -50.37 11.47 21.65 0.25 -50.12 16 8 Si 0.95 43.98 29.60 68.60 2.03 46.01 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.15 6.32 5.45 86.38 0.47 6.79 16 13 C 0.12 4.84 6.00 86.38 0.52 5.36 16 14 N -0.69 -23.09 5.55 -465.82 -2.59 -25.68 16 15 C 0.56 18.84 5.63 86.83 0.49 19.33 16 16 O -0.56 -23.03 17.10 -3.83 -0.07 -23.09 16 17 C -0.08 -2.01 5.67 -19.85 -0.11 -2.12 16 18 C -0.06 -1.26 6.38 22.70 0.14 -1.12 16 19 Cl -0.03 -0.57 28.17 -2.72 -0.08 -0.65 16 20 C 0.14 2.10 10.98 84.71 0.93 3.03 16 21 N -0.45 -7.45 10.33 -195.80 -2.02 -9.47 16 22 C 0.13 2.25 10.98 84.72 0.93 3.18 16 23 C -0.06 -1.47 6.38 22.71 0.14 -1.33 16 24 Cl -0.03 -0.90 28.17 -2.72 -0.08 -0.98 16 25 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.48 6.64 -2.39 -0.02 1.47 16 28 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 29 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 30 H 0.25 13.62 8.31 -92.70 -0.77 12.85 16 31 H 0.07 3.66 5.52 -2.39 -0.01 3.64 16 32 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 33 H 0.06 2.23 6.64 -2.39 -0.02 2.22 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 11.82 8.46 -92.71 -0.78 11.04 16 36 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.35 350.48 2.10 -63.25 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.34 Total: 11.00 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.02 Total: 19.90 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.07 Total: -115.44 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.15 Total: -1.62 kcal Total: -65.35 2.10 -63.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493008610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.516 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds