Wall clock time and date at job start Tue Mar 31 2020 17:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46498 * 109.47606 * 120.00080 * 2 1 3 5 5 C 1.34774 * 120.00211 * 275.00118 * 4 2 1 6 6 O 1.21537 * 119.99798 * 359.97438 * 5 4 2 7 7 C 1.48020 * 120.00075 * 179.97438 * 5 4 2 8 8 N 1.32792 * 119.72231 * 359.73495 * 7 5 4 9 9 C 1.31427 * 121.66891 * 179.71100 * 8 7 5 10 10 C 1.38803 * 120.91770 * 0.55532 * 9 8 7 11 11 Cl 1.73604 * 120.32919 * 179.74565 * 10 9 8 12 12 C 1.38658 * 119.34674 * 359.72822 * 10 9 8 13 13 C 1.38735 * 118.46521 * 359.97438 * 12 10 9 14 14 Cl 1.73600 * 120.47958 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46809 * 240.00581 * 2 1 3 16 16 H 1.09003 * 109.46914 * 299.99413 * 15 2 1 17 17 C 1.52999 * 109.46809 * 180.02562 * 15 2 1 18 18 N 1.46493 * 109.47135 * 59.99552 * 15 2 1 19 19 C 1.36945 * 119.99892 * 204.99848 * 18 15 2 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 15 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 15 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 89.99774 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48499 * 109.47134 * 329.99663 * 23 21 19 27 27 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46886 * 299.99387 * 1 2 3 29 29 H 1.09003 * 109.47419 * 59.99597 * 1 2 3 30 30 H 0.97004 * 119.99747 * 94.99469 * 4 2 1 31 31 H 1.08002 * 119.54354 * 180.28568 * 9 8 7 32 32 H 1.08003 * 120.77184 * 180.02562 * 12 10 9 33 33 H 1.08994 * 109.47399 * 59.99551 * 17 15 2 34 34 H 1.09003 * 109.46886 * 180.02562 * 17 15 2 35 35 H 1.09003 * 109.46903 * 299.99419 * 17 15 2 36 36 H 0.97000 * 120.00738 * 24.73313 * 18 15 2 37 37 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8585 1.1610 2.4116 7 6 2.6402 -0.7163 3.5657 8 7 2.9490 -2.0062 3.5012 9 6 3.3952 -2.6621 4.5491 10 6 3.5506 -2.0283 5.7741 11 17 4.1350 -2.9111 7.1500 12 6 3.2347 -0.6830 5.8882 13 6 2.7718 -0.0149 4.7639 14 17 2.3603 1.6696 4.8478 15 6 2.0399 -0.7212 -1.2494 16 1 1.6766 -1.7489 -1.2494 17 6 3.5699 -0.7217 -1.2491 18 7 1.5515 -0.0305 -2.4454 19 6 1.4207 -0.7136 -3.6251 20 1 1.6818 -1.7604 -3.6747 21 6 0.9525 -0.0606 -4.7570 22 7 0.6348 1.2152 -4.6965 23 14 0.7734 -0.9926 -6.3659 24 1 -0.5868 -1.5829 -6.4473 25 1 0.9772 -0.0601 -7.5035 26 1 1.7874 -2.0758 -6.4261 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 2.2491 -1.6318 1.1525 31 1 3.6403 -3.7098 4.4567 32 1 3.3472 -0.1669 6.8302 33 1 3.9329 -1.2358 -0.3592 34 1 3.9332 -1.2351 -2.1394 35 1 3.9336 0.3058 -1.2488 36 1 1.3171 0.9097 -2.4009 37 1 0.3080 1.6715 -5.4877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505716348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:55 Heat of formation + Delta-G solvation = 5.966543 kcal Electronic energy + Delta-G solvation = -23203.973134 eV Core-core repulsion = 19454.844306 eV Total energy + Delta-G solvation = -3749.128828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11308 -39.30578 -37.34387 -36.96272 -36.65185 -34.02265 -33.07555 -31.95399 -31.37600 -29.41106 -28.37515 -25.32052 -24.29925 -23.97955 -22.73600 -20.77024 -20.07870 -18.43567 -17.76210 -17.43677 -16.99983 -15.77144 -15.67347 -15.44215 -14.67684 -14.52513 -14.30685 -13.88742 -13.60883 -13.43429 -13.25264 -13.04964 -12.72612 -12.41586 -12.29149 -12.06933 -11.83903 -11.72401 -11.50080 -11.16030 -10.95639 -10.81739 -10.68274 -10.57648 -10.21126 -10.19510 -9.89193 -9.74692 -9.54203 -9.43102 -9.01063 -8.75706 -6.98745 -5.77384 -3.06862 -0.12852 0.35403 1.20296 1.72753 2.38914 2.97825 3.33713 3.43325 3.48602 3.50237 3.67741 3.97706 4.16827 4.35915 4.47229 4.60493 5.03449 5.15208 5.31162 5.49691 5.57883 5.68704 5.75627 5.90295 6.12370 6.21349 6.38818 6.43123 6.53680 6.62227 6.82134 6.89690 6.97423 7.05060 7.63492 7.69167 8.22414 8.40347 9.51777 10.06895 10.42064 11.45003 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002541 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.686084 B =11017.023042 C =11920.747515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.088 0.912 4 N -0.692 5.692 5 C 0.560 3.440 6 O -0.510 6.510 7 C 0.099 3.901 8 N -0.426 5.426 9 C 0.117 3.883 10 C -0.064 4.064 11 Cl -0.037 7.037 12 C -0.068 4.068 13 C -0.031 4.031 14 Cl 0.002 6.998 15 C 0.169 3.831 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.718 5.718 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.407 0.593 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.385 0.615 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -7.178 25.849 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.106 0.894 4 N -0.343 5.343 5 C 0.343 3.657 6 O -0.384 6.384 7 C -0.040 4.040 8 N -0.137 5.137 9 C -0.044 4.044 10 C -0.094 4.094 11 Cl -0.008 7.008 12 C -0.095 4.095 13 C -0.062 4.062 14 Cl 0.031 6.969 15 C 0.059 3.941 16 H 0.069 0.931 17 C -0.225 4.225 18 N -0.360 5.360 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.243 0.757 31 H 0.197 0.803 32 H 0.179 0.821 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.220 0.780 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.097 -6.751 24.996 26.600 hybrid contribution 0.160 -0.248 0.109 0.315 sum 6.257 -6.999 25.105 26.803 Atomic orbital electron populations 1.22057 0.94643 1.01918 1.02462 1.21452 0.94624 0.97668 0.83241 0.89379 1.45938 1.64816 1.14542 1.08972 1.17570 0.79332 0.86356 0.82486 1.90906 1.49304 1.14239 1.83968 1.21450 0.98465 0.90017 0.94082 1.67905 1.08861 1.06837 1.30094 1.22992 0.94512 1.01043 0.85849 1.22265 1.02425 0.93308 0.91359 1.98419 1.86373 1.74756 1.41221 1.21502 0.96359 0.92518 0.99125 1.21943 1.00306 0.89939 0.94005 1.98464 1.90787 1.09477 1.98145 1.20379 0.92172 0.95606 0.85961 0.93064 1.22449 0.98991 1.01108 0.99949 1.42287 1.78145 1.10765 1.04776 1.19187 1.36595 0.93974 0.87126 0.91145 1.24739 1.02048 0.95985 0.98062 1.69664 1.50503 1.08713 1.29005 0.86198 0.77759 0.78575 0.83675 1.21740 1.21826 1.20801 0.92977 0.93358 0.89925 0.75713 0.80331 0.82057 0.94466 0.92598 0.93426 0.78035 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.33 37.16 0.35 -2.28 16 2 C 0.13 2.29 2.20 -67.93 -0.15 2.14 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 4 N -0.69 -9.93 4.37 -54.69 -0.24 -10.17 16 5 C 0.56 8.24 7.77 -12.25 -0.10 8.15 16 6 O -0.51 -8.74 13.60 5.33 0.07 -8.67 16 7 C 0.10 1.20 6.75 -82.99 -0.56 0.64 16 8 N -0.43 -4.42 9.54 -9.75 -0.09 -4.51 16 9 C 0.12 0.90 10.98 -17.52 -0.19 0.71 16 10 C -0.06 -0.46 6.35 -39.22 -0.25 -0.71 16 11 Cl -0.04 -0.22 28.99 -51.86 -1.50 -1.72 16 12 C -0.07 -0.53 9.78 -39.24 -0.38 -0.92 16 13 C -0.03 -0.33 6.37 -38.94 -0.25 -0.58 16 14 Cl 0.00 0.02 26.03 -51.86 -1.35 -1.33 16 15 C 0.17 3.22 2.52 -67.93 -0.17 3.05 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 C -0.16 -2.93 9.34 37.16 0.35 -2.58 16 18 N -0.72 -17.29 4.43 -53.42 -0.24 -17.52 16 19 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 30 H 0.41 5.19 7.71 -40.82 -0.31 4.88 16 31 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.04 0.56 7.44 -51.93 -0.39 0.17 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.39 9.99 7.57 -40.82 -0.31 9.68 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -30.33 348.35 -8.29 -38.62 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.29 Total: 9.30 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.60 Total: 0.64 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.16 Total: -59.15 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -2.85 Total: -3.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.33 -8.29 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505716348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.588 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds