Wall clock time and date at job start Tue Mar 31 2020 17:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46629 * 2 1 4 4 N 1.46496 * 109.47193 * 240.00216 * 2 1 3 5 5 C 1.36932 * 120.00198 * 84.99530 * 4 2 1 6 6 H 1.07997 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00061 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47461 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47211 * 120.00282 * 9 7 5 12 12 H 1.48504 * 109.47526 * 240.00275 * 9 7 5 13 13 C 1.53002 * 109.47292 * 119.99564 * 2 1 3 14 14 H 1.08994 * 109.47226 * 185.00093 * 13 2 1 15 15 C 1.53001 * 109.46847 * 65.00487 * 13 2 1 16 16 N 1.46498 * 109.47082 * 305.00433 * 13 2 1 17 17 C 1.34775 * 119.99660 * 204.99632 * 16 13 2 18 18 O 1.21533 * 120.00300 * 0.02562 * 17 16 13 19 19 C 1.48033 * 119.99966 * 180.02562 * 17 16 13 20 20 N 1.32793 * 119.72039 * 359.72840 * 19 17 16 21 21 C 1.31425 * 121.67061 * 180.27786 * 20 19 17 22 22 C 1.38807 * 120.91604 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 120.32916 * 180.02562 * 22 21 20 24 24 C 1.38664 * 119.34277 * 0.02562 * 22 21 20 25 25 C 1.38728 * 118.47060 * 359.97438 * 24 22 21 26 26 Cl 1.73597 * 120.48130 * 179.97438 * 25 24 22 27 27 H 1.08995 * 109.47373 * 299.99796 * 1 2 3 28 28 H 1.08995 * 109.47188 * 60.00495 * 1 2 3 29 29 H 1.09005 * 109.46629 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99908 * 264.99661 * 4 2 1 31 31 H 0.96997 * 119.99951 * 180.02562 * 8 7 5 32 32 H 1.09011 * 109.46956 * 299.99901 * 15 13 2 33 33 H 1.08997 * 109.47468 * 59.99675 * 15 13 2 34 34 H 1.08999 * 109.47292 * 180.02562 * 15 13 2 35 35 H 0.97003 * 120.00383 * 24.99832 * 16 13 2 36 36 H 1.08002 * 119.54524 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.76388 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9255 -1.9388 -3.4499 9 14 2.7900 0.2699 -5.1182 10 1 2.3750 1.6821 -4.9212 11 1 4.2070 0.2280 -5.5607 12 1 1.9297 -0.3595 -6.1523 13 6 2.0401 -0.7212 1.2493 14 1 3.1263 -0.6442 1.2952 15 6 1.6354 -2.1954 1.1880 16 7 1.4559 -0.1035 2.4424 17 6 2.0913 -0.1937 3.6275 18 8 3.1491 -0.7868 3.7064 19 6 1.5007 0.4299 4.8333 20 7 0.3474 1.0814 4.7397 21 6 -0.2085 1.6538 5.7841 22 6 0.3942 1.5975 7.0332 23 17 -0.3538 2.3584 8.4025 24 6 1.5997 0.9273 7.1764 25 6 2.1629 0.3327 6.0567 26 17 3.6709 -0.5189 6.1764 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6317 -1.1526 31 1 3.2495 -2.3958 -4.2417 32 1 0.5490 -2.2724 1.1421 33 1 2.0700 -2.6549 0.3003 34 1 1.9984 -2.7091 2.0782 35 1 0.6118 0.3702 2.3794 36 1 -1.1472 2.1752 5.6688 37 1 2.0885 0.8689 8.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505716350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:01 Heat of formation + Delta-G solvation = 10.262032 kcal Electronic energy + Delta-G solvation = -23215.697308 eV Core-core repulsion = 19466.754746 eV Total energy + Delta-G solvation = -3748.942561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11646 -39.34000 -37.36367 -37.00037 -36.76792 -34.00513 -33.07865 -31.97660 -31.37066 -29.27308 -28.18685 -25.40778 -24.44400 -24.20777 -23.06634 -20.96727 -19.29577 -18.49441 -17.72432 -17.47620 -17.02544 -15.76027 -15.68212 -15.38900 -14.76178 -14.54729 -14.34928 -14.08864 -13.86958 -13.50237 -13.30908 -12.84644 -12.73841 -12.40572 -12.28494 -12.05904 -11.94326 -11.65552 -11.51321 -11.26739 -10.93969 -10.82750 -10.61519 -10.43633 -10.23549 -10.19553 -9.95926 -9.72615 -9.54163 -9.42933 -8.94435 -8.80223 -7.00011 -5.78247 -3.07571 -0.12938 0.35395 1.20298 1.72802 2.38785 2.98380 3.33513 3.43181 3.48901 3.51035 3.67843 3.97671 4.17073 4.35976 4.47509 4.59816 5.03588 5.15488 5.35269 5.47662 5.57741 5.63805 5.67173 5.82773 6.07961 6.16096 6.30798 6.41192 6.46042 6.64078 6.73182 6.86448 6.97840 7.08852 7.63523 7.69811 8.22630 8.40323 9.51705 10.06927 10.41879 11.44430 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002543 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.734596 B =11006.597568 C =11807.481739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.135 3.865 14 H 0.091 0.909 15 C -0.159 4.159 16 N -0.694 5.694 17 C 0.559 3.441 18 O -0.509 6.509 19 C 0.099 3.901 20 N -0.426 5.426 21 C 0.117 3.883 22 C -0.064 4.064 23 Cl -0.036 7.036 24 C -0.068 4.068 25 C -0.031 4.031 26 Cl 0.002 6.998 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.386 0.614 31 H 0.255 0.745 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.408 0.592 36 H 0.180 0.820 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 6.815 25.854 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.030 3.970 14 H 0.109 0.891 15 C -0.218 4.218 16 N -0.347 5.347 17 C 0.341 3.659 18 O -0.384 6.384 19 C -0.040 4.040 20 N -0.137 5.137 21 C -0.044 4.044 22 C -0.094 4.094 23 Cl -0.008 7.008 24 C -0.095 4.095 25 C -0.062 4.062 26 Cl 0.031 6.969 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.222 0.778 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.245 0.755 36 H 0.197 0.803 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.473 6.509 25.009 26.640 hybrid contribution 0.087 0.413 0.115 0.437 sum -6.386 6.921 25.124 26.831 Atomic orbital electron populations 1.22539 0.99198 1.01312 0.99911 1.20354 0.92281 0.95583 0.86003 0.92980 1.42456 1.78224 1.10786 1.04800 1.19265 1.36664 0.93972 0.87102 0.91060 1.24746 1.02013 0.96010 0.98112 1.69669 1.50754 1.08662 1.28879 0.86115 0.77314 0.78773 0.83940 1.20561 1.21874 1.21890 1.21440 0.99157 0.93013 0.83355 0.89078 1.22146 1.01647 0.95557 1.02403 1.46123 1.25801 1.55202 1.07565 1.17610 0.84776 0.80872 0.82608 1.90906 1.21083 1.41788 1.84609 1.21456 0.91613 0.97142 0.93832 1.67903 1.08361 1.06318 1.31163 1.22994 0.99823 0.95883 0.85701 1.22266 0.95704 1.00124 0.91259 1.98418 1.81058 1.79470 1.41806 1.21503 0.93741 0.94879 0.99373 1.21939 0.92206 0.98166 0.93860 1.98464 1.26555 1.73882 1.97953 0.94637 0.92343 0.92802 0.77769 0.93498 0.92441 0.90317 0.93004 0.75465 0.80323 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.01 37.16 0.33 -2.53 16 2 C 0.17 3.24 2.93 -67.93 -0.20 3.04 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.72 -17.48 5.03 -53.43 -0.27 -17.75 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 C 0.13 2.31 2.62 -67.93 -0.18 2.14 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 C -0.16 -2.68 9.00 37.16 0.33 -2.34 16 16 N -0.69 -10.12 4.98 -54.69 -0.27 -10.39 16 17 C 0.56 8.32 7.77 -12.24 -0.10 8.23 16 18 O -0.51 -8.81 13.60 5.34 0.07 -8.74 16 19 C 0.10 1.21 6.75 -82.98 -0.56 0.65 16 20 N -0.43 -4.47 9.54 -9.75 -0.09 -4.56 16 21 C 0.12 0.90 10.98 -17.51 -0.19 0.71 16 22 C -0.06 -0.46 6.35 -39.21 -0.25 -0.71 16 23 Cl -0.04 -0.22 28.99 -51.86 -1.50 -1.72 16 24 C -0.07 -0.53 9.78 -39.24 -0.38 -0.92 16 25 C -0.03 -0.33 6.37 -38.95 -0.25 -0.58 16 26 Cl 0.00 0.02 26.03 -51.86 -1.35 -1.33 16 27 H 0.03 0.48 6.29 -51.93 -0.33 0.16 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 30 H 0.39 9.91 5.77 -40.82 -0.24 9.68 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 0.90 6.57 -51.92 -0.34 0.56 16 33 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.41 5.32 5.90 -40.82 -0.24 5.08 16 36 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -30.70 340.67 -8.12 -38.83 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -3.86 Total: 9.83 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.68 Total: 0.58 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.09 Total: -59.77 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -2.85 Total: -3.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.70 -8.12 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505716350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.089 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds