Wall clock time and date at job start Tue Mar 31 2020 17:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46629 * 2 1 4 4 N 1.46496 * 109.47193 * 240.00216 * 2 1 3 5 5 C 1.36932 * 120.00198 * 84.99530 * 4 2 1 6 6 H 1.07997 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00061 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47461 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47211 * 120.00282 * 9 7 5 12 12 H 1.48504 * 109.47526 * 240.00275 * 9 7 5 13 13 C 1.53002 * 109.47292 * 119.99564 * 2 1 3 14 14 H 1.08994 * 109.47226 * 185.00093 * 13 2 1 15 15 C 1.53001 * 109.46847 * 65.00487 * 13 2 1 16 16 N 1.46498 * 109.47082 * 305.00433 * 13 2 1 17 17 C 1.34775 * 119.99660 * 204.99632 * 16 13 2 18 18 O 1.21533 * 120.00300 * 0.02562 * 17 16 13 19 19 C 1.48033 * 119.99966 * 180.02562 * 17 16 13 20 20 N 1.32793 * 119.72039 * 359.72840 * 19 17 16 21 21 C 1.31425 * 121.67061 * 180.27786 * 20 19 17 22 22 C 1.38807 * 120.91604 * 359.97438 * 21 20 19 23 23 Cl 1.73592 * 120.32916 * 180.02562 * 22 21 20 24 24 C 1.38664 * 119.34277 * 0.02562 * 22 21 20 25 25 C 1.38728 * 118.47060 * 359.97438 * 24 22 21 26 26 Cl 1.73597 * 120.48130 * 179.97438 * 25 24 22 27 27 H 1.08995 * 109.47373 * 299.99796 * 1 2 3 28 28 H 1.08995 * 109.47188 * 60.00495 * 1 2 3 29 29 H 1.09005 * 109.46629 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99908 * 264.99661 * 4 2 1 31 31 H 0.96997 * 119.99951 * 180.02562 * 8 7 5 32 32 H 1.09011 * 109.46956 * 299.99901 * 15 13 2 33 33 H 1.08997 * 109.47468 * 59.99675 * 15 13 2 34 34 H 1.08999 * 109.47292 * 180.02562 * 15 13 2 35 35 H 0.97003 * 120.00383 * 24.99832 * 16 13 2 36 36 H 1.08002 * 119.54524 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.76388 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9255 -1.9388 -3.4499 9 14 2.7900 0.2699 -5.1182 10 1 2.3750 1.6821 -4.9212 11 1 4.2070 0.2280 -5.5607 12 1 1.9297 -0.3595 -6.1523 13 6 2.0401 -0.7212 1.2493 14 1 3.1263 -0.6442 1.2952 15 6 1.6354 -2.1954 1.1880 16 7 1.4559 -0.1035 2.4424 17 6 2.0913 -0.1937 3.6275 18 8 3.1491 -0.7868 3.7064 19 6 1.5007 0.4299 4.8333 20 7 0.3474 1.0814 4.7397 21 6 -0.2085 1.6538 5.7841 22 6 0.3942 1.5975 7.0332 23 17 -0.3538 2.3584 8.4025 24 6 1.5997 0.9273 7.1764 25 6 2.1629 0.3327 6.0567 26 17 3.6709 -0.5189 6.1764 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6317 -1.1526 31 1 3.2495 -2.3958 -4.2417 32 1 0.5490 -2.2724 1.1421 33 1 2.0700 -2.6549 0.3003 34 1 1.9984 -2.7091 2.0782 35 1 0.6118 0.3702 2.3794 36 1 -1.1472 2.1752 5.6688 37 1 2.0885 0.8689 8.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505716350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:01 Heat of formation + Delta-G solvation = -9.846073 kcal Electronic energy + Delta-G solvation = -23216.569261 eV Core-core repulsion = 19466.754746 eV Total energy + Delta-G solvation = -3749.814514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96308 -40.46524 -38.45600 -37.86676 -37.70090 -35.63224 -34.01725 -33.35853 -32.42879 -30.80197 -29.79372 -26.38535 -26.10758 -25.12106 -24.48574 -22.12980 -20.69969 -19.69328 -19.24776 -18.46335 -17.90095 -16.89529 -16.74041 -16.47030 -16.39592 -15.85757 -15.68341 -15.21138 -15.08624 -14.79915 -14.49038 -14.08808 -13.92281 -13.56267 -13.38349 -13.09368 -13.03379 -12.97104 -12.82588 -12.72050 -12.62099 -12.36820 -12.06592 -11.98449 -11.65434 -11.58763 -11.37539 -10.95396 -10.87276 -10.62510 -10.27800 -10.00266 -9.01925 -7.92378 -5.21013 -0.90760 -0.31226 0.55834 0.98166 1.47141 1.49229 1.49928 1.59604 1.88561 2.41957 2.58473 2.87339 3.32394 3.41549 3.43278 3.59515 3.77225 3.88760 3.99105 4.08651 4.29507 4.34639 4.55359 4.61324 4.71353 4.87723 4.93155 4.97782 5.03034 5.21373 5.26604 5.46889 5.55567 5.63541 6.17371 6.29902 6.52015 7.08370 7.36620 8.10338 8.34056 9.31357 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002543 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.734596 B =11006.597568 C =11807.481739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.047 0.953 4 N -0.733 5.733 5 C -0.235 4.235 6 H 0.077 0.923 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.294 1.294 13 C 0.149 3.851 14 H 0.065 0.935 15 C -0.149 4.149 16 N -0.687 5.687 17 C 0.557 3.443 18 O -0.540 6.540 19 C 0.078 3.922 20 N -0.436 5.436 21 C 0.123 3.877 22 C -0.052 4.052 23 Cl -0.016 7.016 24 C -0.060 4.060 25 C -0.039 4.039 26 Cl -0.016 7.016 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.377 0.623 31 H 0.250 0.750 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.212 0.788 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 8.753 27.838 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.065 0.935 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.095 0.905 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.224 1.224 12 H -0.221 1.221 13 C 0.044 3.956 14 H 0.083 0.917 15 C -0.208 4.208 16 N -0.340 5.340 17 C 0.341 3.659 18 O -0.417 6.417 19 C -0.060 4.060 20 N -0.148 5.148 21 C -0.039 4.039 22 C -0.082 4.082 23 Cl 0.013 6.987 24 C -0.086 4.086 25 C -0.069 4.069 26 Cl 0.013 6.987 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.211 0.789 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.228 0.772 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.468 8.495 27.037 29.578 hybrid contribution 0.598 -0.076 -0.282 0.666 sum -7.870 8.420 26.755 29.131 Atomic orbital electron populations 1.22357 0.96684 1.01645 1.01101 1.20503 0.93836 0.94857 0.85049 0.93526 1.42641 1.78592 1.10547 1.05731 1.19636 1.34763 0.94260 0.88039 0.90474 1.25530 1.02992 0.96901 1.01414 1.69822 1.52640 1.10199 1.29352 0.85102 0.76613 0.78262 0.79946 1.18954 1.22436 1.22142 1.20991 0.97687 0.93198 0.83736 0.91709 1.22030 1.02284 0.95097 1.01357 1.45890 1.26056 1.55289 1.06803 1.18026 0.84322 0.80284 0.83255 1.90887 1.22440 1.43112 1.85216 1.20984 0.92999 0.99111 0.92907 1.67862 1.07775 1.06679 1.32457 1.23535 1.00416 0.94783 0.85142 1.22327 0.95118 0.98955 0.91799 1.98440 1.80589 1.78906 1.40742 1.21739 0.93774 0.93720 0.99398 1.21999 0.91757 0.98814 0.94368 1.98457 1.27790 1.74455 1.97973 0.90885 0.93663 0.92897 0.78885 0.94101 0.91045 0.92593 0.92735 0.74376 0.77153 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.01 71.98 0.65 -4.46 16 2 C 0.17 6.38 2.93 44.99 0.13 6.51 16 3 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 4 N -0.73 -36.19 5.03 -322.94 -1.63 -37.81 16 5 C -0.24 -12.85 9.93 84.03 0.83 -12.01 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 8 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 9 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 C 0.15 5.18 2.62 44.99 0.12 5.30 16 14 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 15 C -0.15 -5.09 9.00 71.98 0.65 -4.44 16 16 N -0.69 -19.56 4.98 -445.23 -2.22 -21.77 16 17 C 0.56 16.47 7.77 86.84 0.67 17.15 16 18 O -0.54 -19.10 13.60 -3.82 -0.05 -19.15 16 19 C 0.08 1.81 6.75 41.89 0.28 2.09 16 20 N -0.44 -8.13 9.54 -184.75 -1.76 -9.89 16 21 C 0.12 1.48 10.98 84.89 0.93 2.41 16 22 C -0.05 -0.58 6.35 22.51 0.14 -0.44 16 23 Cl -0.02 -0.13 28.99 -2.72 -0.08 -0.21 16 24 C -0.06 -0.79 9.78 22.49 0.22 -0.57 16 25 C -0.04 -0.78 6.37 22.68 0.14 -0.64 16 26 Cl -0.02 -0.38 26.03 -2.72 -0.07 -0.45 16 27 H 0.07 1.80 6.29 -2.39 -0.02 1.78 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.72 6.56 -2.38 -0.02 1.71 16 30 H 0.38 19.97 5.77 -92.71 -0.54 19.43 16 31 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.07 2.20 6.57 -2.38 -0.02 2.18 16 33 H 0.06 2.17 6.29 -2.39 -0.02 2.15 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 10.14 5.90 -92.71 -0.55 9.59 16 36 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -67.52 340.67 1.81 -65.71 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.06 Total: 27.40 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.24 Total: 7.02 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.32 Total: -128.45 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.15 Total: -0.66 kcal Total: -67.52 1.81 -65.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505716350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.863 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds