Wall clock time and date at job start Tue Mar 31 2020 17:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47414 * 2 1 4 4 C 1.53002 * 109.47094 * 240.00194 * 2 1 3 5 5 N 1.46501 * 109.47300 * 184.99773 * 4 2 1 6 6 C 1.34779 * 120.00123 * 180.02562 * 5 4 2 7 7 O 1.21531 * 119.99872 * 0.02562 * 6 5 4 8 8 C 1.47992 * 119.99882 * 180.02562 * 6 5 4 9 9 C 1.39977 * 120.94361 * 89.72130 * 8 6 5 10 10 Cl 1.73605 * 120.50931 * 359.97438 * 9 8 6 11 11 C 1.38299 * 118.97834 * 179.70649 * 9 8 6 12 12 N 1.31780 * 120.91577 * 0.58062 * 11 9 8 13 13 C 1.31791 * 122.09483 * 359.71060 * 12 11 9 14 14 C 1.38294 * 120.91591 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.51275 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47406 * 120.00430 * 2 1 3 17 17 C 1.46503 * 120.00236 * 59.99529 * 16 2 1 18 18 C 1.36945 * 119.99867 * 239.99960 * 16 2 1 19 19 H 1.07993 * 120.00369 * 336.48867 * 18 16 2 20 20 C 1.38811 * 119.99656 * 156.48284 * 18 16 2 21 21 N 1.31619 * 120.00569 * 330.37264 * 20 18 16 22 22 Si 1.86804 * 119.99896 * 150.09454 * 20 18 16 23 23 H 1.48503 * 109.46784 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46915 * 119.99935 * 22 20 18 25 25 H 1.48497 * 109.47540 * 240.00260 * 22 20 18 26 26 H 1.08992 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00187 * 1 2 3 28 28 H 1.09003 * 109.46884 * 59.99232 * 1 2 3 29 29 H 1.08995 * 109.47052 * 305.00066 * 4 2 1 30 30 H 1.09004 * 109.46961 * 64.99949 * 4 2 1 31 31 H 0.97000 * 119.99872 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.54096 * 180.31590 * 11 9 8 33 33 H 1.08008 * 119.54502 * 180.02562 * 13 12 11 34 34 H 1.08998 * 109.47001 * 274.79863 * 17 16 2 35 35 H 1.08997 * 109.46637 * 34.79785 * 17 16 2 36 36 H 1.08991 * 109.47173 * 154.79898 * 17 16 2 37 37 H 0.97007 * 119.99377 * 353.95848 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1731 -1.4282 -2.1914 7 8 3.5688 -1.8833 -3.1425 8 6 5.6480 -1.5348 -2.1318 9 6 6.2662 -2.6375 -1.5307 10 17 5.3135 -3.9121 -0.8367 11 6 7.6476 -2.6985 -1.5032 12 7 8.3785 -1.7326 -2.0221 13 6 7.8378 -0.6744 -2.5921 14 6 6.4643 -0.5333 -2.6701 15 17 5.7633 0.8646 -3.4238 16 7 2.0184 -0.6907 1.1961 17 6 1.6645 -2.0933 1.4279 18 6 2.8057 -0.0252 2.0975 19 1 3.3753 0.8370 1.7838 20 6 2.8715 -0.4588 3.4145 21 7 1.8383 -1.0645 3.9604 22 14 4.4293 -0.1897 4.4097 23 1 5.4393 0.5036 3.5703 24 1 4.1190 0.6432 5.5993 25 1 4.9678 -1.5015 4.8507 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 1.7516 -0.1582 -2.1370 31 1 3.9824 -0.4628 -0.4317 32 1 8.1340 -3.5476 -1.0462 33 1 8.4763 0.0928 -3.0047 34 1 0.6955 -2.1462 1.9243 35 1 1.6129 -2.6174 0.4736 36 1 2.4215 -2.5596 2.0582 37 1 1.0018 -1.1302 3.4736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505995064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:21 Heat of formation + Delta-G solvation = 8.756927 kcal Electronic energy + Delta-G solvation = -24288.773222 eV Core-core repulsion = 20539.765394 eV Total energy + Delta-G solvation = -3749.007828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.87581 -39.17601 -37.09996 -36.99787 -36.77446 -34.09839 -33.00877 -31.96629 -31.34753 -29.30081 -26.57954 -26.22739 -24.46705 -23.97374 -22.80892 -20.74731 -19.64141 -18.14895 -17.57170 -17.46500 -16.93400 -16.12836 -15.55398 -15.26076 -14.88322 -14.76664 -14.21973 -14.00064 -13.70569 -13.57873 -12.91238 -12.81903 -12.65600 -12.26180 -12.18688 -12.10834 -11.82875 -11.64606 -11.33099 -11.24249 -10.84643 -10.74883 -10.60301 -10.47081 -10.29729 -10.11053 -9.97352 -9.72631 -9.54135 -9.23633 -8.78678 -8.41215 -7.04958 -6.15641 -3.28813 0.35912 0.38051 1.44093 1.83214 2.50227 3.02105 3.21489 3.45601 3.47442 3.59783 3.95956 4.27127 4.37662 4.49768 4.54661 4.70698 5.13567 5.16433 5.29556 5.32295 5.43456 5.74699 5.81751 5.92083 6.01623 6.11423 6.26446 6.49435 6.59010 6.66234 6.78522 6.89715 7.08044 7.26332 7.68912 7.88366 8.25480 8.48807 9.02601 9.76364 10.15935 11.12358 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.005068 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.547717 B = 5523.267565 C = 6224.568774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.071 0.929 4 C 0.107 3.893 5 N -0.684 5.684 6 C 0.558 3.442 7 O -0.527 6.527 8 C -0.058 4.058 9 C -0.051 4.051 10 Cl -0.017 7.017 11 C 0.119 3.881 12 N -0.446 5.446 13 C 0.117 3.883 14 C -0.054 4.054 15 Cl -0.027 7.027 16 N -0.594 5.594 17 C 0.138 3.862 18 C -0.365 4.365 19 H 0.059 0.941 20 C -0.015 4.015 21 N -0.907 5.907 22 Si 1.058 2.942 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.290 1.290 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.414 0.586 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.007 0.993 35 H 0.014 0.986 36 H 0.052 0.948 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -0.282 -12.690 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.090 0.910 4 C -0.018 4.018 5 N -0.334 5.334 6 C 0.340 3.660 7 O -0.404 6.404 8 C -0.071 4.071 9 C -0.081 4.081 10 Cl 0.012 6.988 11 C -0.039 4.039 12 N -0.154 5.154 13 C -0.041 4.041 14 C -0.084 4.084 15 Cl 0.002 6.998 16 N -0.318 5.318 17 C -0.008 4.008 18 C -0.493 4.493 19 H 0.077 0.923 20 C -0.219 4.219 21 N -0.546 5.546 22 Si 0.888 3.112 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.216 1.216 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.196 0.804 33 H 0.195 0.805 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.345 -0.956 -11.831 15.745 hybrid contribution -1.662 0.564 -1.022 2.031 sum 8.683 -0.392 -12.853 15.516 Atomic orbital electron populations 1.22187 0.97414 1.01305 1.00835 1.20641 0.92456 0.95712 0.86280 0.91046 1.22024 0.78561 1.01561 0.99638 1.45824 1.08650 1.56740 1.22207 1.17700 0.85072 0.79460 0.83758 1.90806 1.68202 1.48065 1.33337 1.20380 0.96022 0.93308 0.97339 1.22188 0.93625 0.92385 0.99937 1.98457 1.71085 1.47545 1.81717 1.22936 0.87960 0.97660 0.95311 1.67833 1.38746 1.00808 1.08042 1.22901 0.90157 0.95927 0.95082 1.22126 0.94127 0.91217 1.00967 1.98426 1.84058 1.37880 1.79452 1.44037 1.58751 1.06874 1.22135 1.20885 0.98452 0.84834 0.96594 1.19931 1.22135 1.15805 0.91429 0.92337 1.25676 1.02816 0.99517 0.93888 1.70717 1.01583 1.44343 1.37953 0.83649 0.75661 0.76298 0.75560 1.21780 1.22184 1.21626 0.93233 0.92229 0.93682 0.91779 0.91938 0.74898 0.80387 0.80501 0.97442 0.96751 0.92899 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.19 37.16 0.34 -2.33 16 2 C 0.16 2.92 2.88 -67.93 -0.20 2.73 16 3 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 4 C 0.11 1.83 4.90 -4.04 -0.02 1.81 16 5 N -0.68 -11.66 5.39 -61.20 -0.33 -11.99 16 6 C 0.56 9.43 5.63 -12.26 -0.07 9.36 16 7 O -0.53 -10.24 17.10 5.34 0.09 -10.15 16 8 C -0.06 -0.85 5.67 -104.60 -0.59 -1.44 16 9 C -0.05 -0.69 6.38 -38.91 -0.25 -0.94 16 10 Cl -0.02 -0.24 28.17 -51.86 -1.46 -1.71 16 11 C 0.12 1.34 10.98 -17.55 -0.19 1.14 16 12 N -0.45 -5.06 10.33 -13.24 -0.14 -5.20 16 13 C 0.12 1.24 10.98 -17.55 -0.19 1.05 16 14 C -0.05 -0.69 6.38 -38.91 -0.25 -0.93 16 15 Cl -0.03 -0.33 28.17 -51.86 -1.46 -1.79 16 16 N -0.59 -13.24 2.16 -173.49 -0.37 -13.61 16 17 C 0.14 3.09 8.05 59.85 0.48 3.57 16 18 C -0.36 -9.18 9.12 -15.06 -0.14 -9.31 16 19 H 0.06 1.47 7.95 -52.49 -0.42 1.06 16 20 C -0.02 -0.40 4.59 -17.43 -0.08 -0.48 16 21 N -0.91 -25.93 12.68 55.49 0.70 -25.23 16 22 Si 1.06 24.15 30.01 -169.99 -5.10 19.05 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.16 6.92 -51.93 -0.36 0.80 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.41 7.38 7.88 -40.82 -0.32 7.06 16 32 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.01 0.18 6.98 -51.93 -0.36 -0.19 16 35 H 0.01 0.29 6.56 -51.93 -0.34 -0.05 16 36 H 0.05 1.31 7.15 -51.93 -0.37 0.93 16 37 H 0.27 7.84 6.45 -40.82 -0.26 7.57 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -29.57 346.06 -8.16 -37.73 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.15 Total: 3.47 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.15 Total: 4.21 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.14 Total: -56.03 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.10 Total: 19.05 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -2.92 Total: -3.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.57 -8.16 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505995064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds