Wall clock time and date at job start Tue Mar 31 2020 17:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47414 * 2 1 4 4 C 1.53002 * 109.47094 * 240.00194 * 2 1 3 5 5 N 1.46501 * 109.47300 * 184.99773 * 4 2 1 6 6 C 1.34779 * 120.00123 * 180.02562 * 5 4 2 7 7 O 1.21531 * 119.99872 * 0.02562 * 6 5 4 8 8 C 1.47992 * 119.99882 * 180.02562 * 6 5 4 9 9 C 1.39977 * 120.94361 * 89.72130 * 8 6 5 10 10 Cl 1.73605 * 120.50931 * 359.97438 * 9 8 6 11 11 C 1.38299 * 118.97834 * 179.70649 * 9 8 6 12 12 N 1.31780 * 120.91577 * 0.58062 * 11 9 8 13 13 C 1.31791 * 122.09483 * 359.71060 * 12 11 9 14 14 C 1.38294 * 120.91591 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.51275 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47406 * 120.00430 * 2 1 3 17 17 C 1.46503 * 120.00236 * 59.99529 * 16 2 1 18 18 C 1.36945 * 119.99867 * 239.99960 * 16 2 1 19 19 H 1.07993 * 120.00369 * 336.48867 * 18 16 2 20 20 C 1.38811 * 119.99656 * 156.48284 * 18 16 2 21 21 N 1.31619 * 120.00569 * 330.37264 * 20 18 16 22 22 Si 1.86804 * 119.99896 * 150.09454 * 20 18 16 23 23 H 1.48503 * 109.46784 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46915 * 119.99935 * 22 20 18 25 25 H 1.48497 * 109.47540 * 240.00260 * 22 20 18 26 26 H 1.08992 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00187 * 1 2 3 28 28 H 1.09003 * 109.46884 * 59.99232 * 1 2 3 29 29 H 1.08995 * 109.47052 * 305.00066 * 4 2 1 30 30 H 1.09004 * 109.46961 * 64.99949 * 4 2 1 31 31 H 0.97000 * 119.99872 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.54096 * 180.31590 * 11 9 8 33 33 H 1.08008 * 119.54502 * 180.02562 * 13 12 11 34 34 H 1.08998 * 109.47001 * 274.79863 * 17 16 2 35 35 H 1.08997 * 109.46637 * 34.79785 * 17 16 2 36 36 H 1.08991 * 109.47173 * 154.79898 * 17 16 2 37 37 H 0.97007 * 119.99377 * 353.95848 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1731 -1.4282 -2.1914 7 8 3.5688 -1.8833 -3.1425 8 6 5.6480 -1.5348 -2.1318 9 6 6.2662 -2.6375 -1.5307 10 17 5.3135 -3.9121 -0.8367 11 6 7.6476 -2.6985 -1.5032 12 7 8.3785 -1.7326 -2.0221 13 6 7.8378 -0.6744 -2.5921 14 6 6.4643 -0.5333 -2.6701 15 17 5.7633 0.8646 -3.4238 16 7 2.0184 -0.6907 1.1961 17 6 1.6645 -2.0933 1.4279 18 6 2.8057 -0.0252 2.0975 19 1 3.3753 0.8370 1.7838 20 6 2.8715 -0.4588 3.4145 21 7 1.8383 -1.0645 3.9604 22 14 4.4293 -0.1897 4.4097 23 1 5.4393 0.5036 3.5703 24 1 4.1190 0.6432 5.5993 25 1 4.9678 -1.5015 4.8507 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 1.7516 -0.1582 -2.1370 31 1 3.9824 -0.4628 -0.4317 32 1 8.1340 -3.5476 -1.0462 33 1 8.4763 0.0928 -3.0047 34 1 0.6955 -2.1462 1.9243 35 1 1.6129 -2.6174 0.4736 36 1 2.4215 -2.5596 2.0582 37 1 1.0018 -1.1302 3.4736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505995064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:21 Heat of formation + Delta-G solvation = -9.207481 kcal Electronic energy + Delta-G solvation = -24289.552217 eV Core-core repulsion = 20539.765394 eV Total energy + Delta-G solvation = -3749.786823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91247 -40.44779 -38.62471 -38.08117 -37.80094 -35.70599 -34.24969 -33.44805 -32.26087 -31.06765 -28.13908 -27.86197 -25.64151 -24.90407 -24.62947 -21.97553 -21.23576 -19.57038 -19.20437 -18.50628 -17.94317 -17.45628 -16.90527 -16.66128 -15.83399 -15.81064 -15.72201 -15.65270 -15.36953 -15.12141 -14.46835 -13.97881 -13.77726 -13.64808 -13.57855 -13.21378 -13.08071 -12.92007 -12.82349 -12.70148 -12.50753 -12.40139 -12.25662 -11.89704 -11.82139 -11.67386 -11.43351 -11.00786 -10.84682 -10.41032 -10.18087 -10.16041 -8.97578 -8.20700 -5.30737 -0.64206 -0.54054 0.46307 0.83975 1.20834 1.60932 1.66365 1.81004 1.90337 2.18496 2.66566 3.12880 3.23426 3.27650 3.33254 3.47785 3.50949 3.80198 3.90945 4.14032 4.23861 4.46102 4.48518 4.56745 4.62987 4.77407 4.87922 4.94886 4.98452 5.14203 5.16759 5.25619 5.41486 5.89241 6.31433 6.36729 6.43407 6.90058 7.07873 7.81512 8.22246 9.05786 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.005068 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.547717 B = 5523.267565 C = 6224.568774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.686 5.686 6 C 0.563 3.437 7 O -0.556 6.556 8 C -0.079 4.079 9 C -0.065 4.065 10 Cl -0.032 7.032 11 C 0.130 3.870 12 N -0.448 5.448 13 C 0.132 3.868 14 C -0.061 4.061 15 Cl -0.025 7.025 16 N -0.602 5.602 17 C 0.156 3.844 18 C -0.351 4.351 19 H 0.061 0.939 20 C -0.068 4.068 21 N -0.941 5.941 22 Si 1.101 2.899 23 H -0.268 1.268 24 H -0.298 1.298 25 H -0.294 1.294 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.411 0.589 32 H 0.207 0.793 33 H 0.213 0.787 34 H -0.009 1.009 35 H 0.033 0.967 36 H 0.024 0.976 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 0.551 -13.954 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.089 0.911 4 C -0.008 4.008 5 N -0.335 5.335 6 C 0.347 3.653 7 O -0.435 6.435 8 C -0.091 4.091 9 C -0.095 4.095 10 Cl -0.003 7.003 11 C -0.027 4.027 12 N -0.156 5.156 13 C -0.026 4.026 14 C -0.091 4.091 15 Cl 0.004 6.996 16 N -0.326 5.326 17 C 0.010 3.990 18 C -0.480 4.480 19 H 0.079 0.921 20 C -0.266 4.266 21 N -0.583 5.583 22 Si 0.928 3.072 23 H -0.193 1.193 24 H -0.226 1.226 25 H -0.220 1.220 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.224 0.776 33 H 0.229 0.771 34 H 0.009 0.991 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.203 -0.103 -13.132 17.927 hybrid contribution -2.217 0.361 -0.744 2.367 sum 9.986 0.258 -13.877 17.098 Atomic orbital electron populations 1.22072 0.95914 1.01390 1.01524 1.20778 0.93548 0.95445 0.85208 0.91063 1.21865 0.78741 1.00961 0.99204 1.45839 1.08584 1.56843 1.22195 1.17944 0.86082 0.78352 0.82902 1.90782 1.69247 1.49172 1.34326 1.20319 0.94746 0.94844 0.99231 1.22319 0.94360 0.91976 1.00810 1.98450 1.71653 1.48183 1.82028 1.23377 0.86997 0.98200 0.94130 1.67978 1.38486 1.01008 1.08150 1.23461 0.89626 0.96068 0.93427 1.22251 0.94714 0.90962 1.01161 1.98426 1.84201 1.37608 1.79390 1.44147 1.58964 1.06925 1.22575 1.20609 0.96568 0.85133 0.96659 1.20154 1.21307 1.15071 0.91475 0.92116 1.26775 1.04350 0.99957 0.95488 1.70840 1.01767 1.47331 1.38380 0.83060 0.73477 0.76051 0.74661 1.19284 1.22599 1.22048 0.93484 0.94154 0.90299 0.92710 0.90193 0.75296 0.77633 0.77088 0.99051 0.94825 0.95666 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.19 71.98 0.66 -4.21 16 2 C 0.16 5.66 2.88 44.99 0.13 5.79 16 3 H 0.07 2.58 7.87 -2.39 -0.02 2.56 16 4 C 0.12 3.84 4.90 86.38 0.42 4.26 16 5 N -0.69 -22.69 5.39 -465.83 -2.51 -25.20 16 6 C 0.56 18.55 5.63 86.83 0.49 19.04 16 7 O -0.56 -21.27 17.10 -3.81 -0.07 -21.34 16 8 C -0.08 -2.21 5.67 -19.85 -0.11 -2.32 16 9 C -0.06 -1.65 6.38 22.71 0.14 -1.51 16 10 Cl -0.03 -0.90 28.17 -2.72 -0.08 -0.97 16 11 C 0.13 2.60 10.98 84.72 0.93 3.53 16 12 N -0.45 -8.78 10.33 -195.80 -2.02 -10.80 16 13 C 0.13 2.38 10.98 84.71 0.93 3.31 16 14 C -0.06 -1.41 6.38 22.70 0.14 -1.26 16 15 Cl -0.03 -0.56 28.17 -2.72 -0.08 -0.64 16 16 N -0.60 -26.72 2.16 -702.80 -1.52 -28.24 16 17 C 0.16 7.09 8.05 127.77 1.03 8.12 16 18 C -0.35 -17.53 9.12 84.03 0.77 -16.77 16 19 H 0.06 2.99 7.95 -2.91 -0.02 2.97 16 20 C -0.07 -3.62 4.59 84.86 0.39 -3.23 16 21 N -0.94 -54.96 12.68 21.65 0.27 -54.68 16 22 Si 1.10 48.61 30.01 68.60 2.06 50.66 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 26 H 0.05 1.55 7.67 -2.39 -0.02 1.53 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.91 6.92 -2.39 -0.02 1.90 16 30 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.41 14.26 7.88 -92.71 -0.73 13.53 16 32 H 0.21 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 34 H -0.01 -0.42 6.98 -2.39 -0.02 -0.43 16 35 H 0.03 1.37 6.56 -2.39 -0.02 1.35 16 36 H 0.02 1.26 7.15 -2.39 -0.02 1.24 16 37 H 0.26 15.29 6.45 -92.70 -0.60 14.69 16 Total: -1.00 -63.77 346.06 2.55 -61.22 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.56 Total: 15.26 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.93 Total: 14.74 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.78 Total: -118.93 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.34 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.06 Total: 50.66 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.15 Total: -1.61 kcal Total: -63.77 2.55 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505995064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.010 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds