Wall clock time and date at job start Tue Mar 31 2020 16:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46989 * 240.00511 * 3 2 1 5 5 H 1.48499 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46822 * 120.00635 * 3 2 1 7 7 C 1.38816 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49504 * 179.97438 * 9 7 2 11 11 C 1.53949 * 86.11514 * 155.36266 * 10 9 7 12 12 C 1.53001 * 113.74051 * 269.15615 * 11 10 9 13 13 C 1.53000 * 109.47515 * 172.64524 * 12 11 10 14 14 O 1.42893 * 109.47544 * 178.33491 * 13 12 11 15 15 N 1.46499 * 113.74141 * 137.95997 * 11 10 9 16 16 C 1.34765 * 120.00322 * 66.89614 * 15 11 10 17 17 O 1.21639 * 120.00381 * 354.80355 * 16 15 11 18 18 C 1.47148 * 120.00269 * 174.80380 * 16 15 11 19 19 N 1.30567 * 125.53222 * 179.97438 * 18 16 15 20 20 C 1.30658 * 115.93294 * 179.73709 * 19 18 16 21 21 C 1.34437 * 115.74440 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 125.46759 * 179.97438 * 21 20 19 23 23 S 1.71074 * 109.06817 * 0.02562 * 21 20 19 24 24 C 1.47816 * 134.45343 * 359.87213 * 9 7 2 25 25 H 0.96996 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.09002 * 113.76699 * 41.06067 * 10 9 7 27 27 H 1.08992 * 113.77021 * 269.66388 * 10 9 7 28 28 H 1.09000 * 109.47170 * 292.65040 * 12 11 10 29 29 H 1.09008 * 109.47247 * 52.63991 * 12 11 10 30 30 H 1.09004 * 109.46772 * 298.33618 * 13 12 11 31 31 H 1.08998 * 109.46596 * 58.33084 * 13 12 11 32 32 H 0.96697 * 114.00095 * 179.97438 * 14 13 12 33 33 H 0.97005 * 119.99542 * 246.89659 * 15 11 10 34 34 H 1.08000 * 122.13115 * 179.97438 * 20 19 18 35 35 H 1.08996 * 113.77271 * 90.38185 * 24 9 7 36 36 H 1.09000 * 113.83529 * 318.91042 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 6 0.3659 -4.0571 2.1694 13 6 -1.0662 -4.1555 2.6987 14 8 -1.0462 -4.1701 4.1274 15 7 -0.3333 -5.2614 0.0969 16 6 0.1759 -6.4911 0.3086 17 8 1.2487 -6.6171 0.8678 18 6 -0.5658 -7.6813 -0.1369 19 7 -0.1751 -8.9183 0.0113 20 6 -0.9855 -9.8328 -0.4515 21 6 -2.1155 -9.3779 -1.0202 22 17 -3.3623 -10.3664 -1.7144 23 16 -2.1270 -7.6686 -0.9514 24 6 -0.1058 -2.7570 0.0023 25 1 -0.4850 0.8400 0.0004 26 1 2.5628 -4.0327 0.6530 27 1 1.8311 -4.2346 -0.9992 28 1 0.9490 -4.9001 2.5402 29 1 0.8166 -3.1254 2.5115 30 1 -1.6413 -3.2968 2.3522 31 1 -1.5267 -5.0729 2.3323 32 1 -1.9221 -4.2308 4.5325 33 1 -1.1507 -5.1564 -0.4148 34 1 -0.7614 -10.8870 -0.3823 35 1 -0.5320 -2.8718 -0.9943 36 1 -0.7184 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506106330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:20 Heat of formation + Delta-G solvation = 22.030492 kcal Electronic energy + Delta-G solvation = -23712.856856 eV Core-core repulsion = 19966.468320 eV Total energy + Delta-G solvation = -3746.388536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.55926 -39.72517 -37.83924 -37.29518 -36.42860 -33.90137 -32.12601 -30.77842 -30.20425 -27.38717 -26.44739 -25.15851 -23.69138 -22.53704 -21.37963 -20.12871 -19.26769 -18.75526 -17.38777 -17.01779 -16.85307 -16.07706 -15.70942 -15.50434 -14.84199 -14.75729 -14.38528 -14.30925 -14.14926 -13.75635 -13.63179 -12.73810 -12.63139 -12.48930 -12.00795 -11.83474 -11.69875 -11.41690 -11.12291 -11.00276 -10.82006 -10.79899 -10.61059 -10.20243 -10.02405 -9.89678 -9.80415 -9.68443 -9.39911 -9.30764 -9.00408 -8.77070 -6.99428 -5.85417 -3.17395 -0.27630 0.31502 0.99626 1.59375 1.99634 2.78155 3.08924 3.38228 3.42355 3.43110 4.16605 4.39691 4.42744 4.52354 4.72027 5.08320 5.11348 5.41534 5.45136 5.46796 5.64392 5.69334 5.85347 6.14848 6.29274 6.43430 6.57250 6.63230 6.73664 6.97923 7.05216 7.18695 7.40898 7.50259 7.85070 7.88559 8.12778 8.96526 9.62636 10.47038 11.32201 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002963 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.461154 B = 9448.196234 C = 9814.653589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.221 4.221 8 H 0.083 0.917 9 N -0.603 5.603 10 C 0.127 3.873 11 C 0.123 3.877 12 C -0.097 4.097 13 C 0.081 3.919 14 O -0.573 6.573 15 N -0.703 5.703 16 C 0.589 3.411 17 O -0.484 6.484 18 C 0.015 3.985 19 N -0.392 5.392 20 C 0.049 3.951 21 C -0.208 4.208 22 Cl 0.013 6.987 23 S 0.227 5.773 24 C 0.168 3.832 25 H 0.255 0.745 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.373 0.627 33 H 0.395 0.605 34 H 0.188 0.812 35 H 0.033 0.967 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -17.830 -1.765 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.348 4.348 8 H 0.101 0.899 9 N -0.329 5.329 10 C 0.001 3.999 11 C 0.038 3.962 12 C -0.136 4.136 13 C 0.004 3.996 14 O -0.378 6.378 15 N -0.356 5.356 16 C 0.369 3.631 17 O -0.357 6.357 18 C -0.262 4.262 19 N -0.108 5.108 20 C -0.111 4.111 21 C -0.358 4.358 22 Cl 0.041 6.959 23 S 0.480 5.520 24 C 0.042 3.958 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.218 0.782 33 H 0.230 0.770 34 H 0.204 0.796 35 H 0.051 0.949 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.552 -16.853 -1.560 19.434 hybrid contribution -0.683 -0.423 -0.534 0.965 sum -10.235 -17.275 -2.094 20.188 Atomic orbital electron populations 1.69755 1.05015 1.25671 1.56509 1.24766 0.95722 0.97567 1.02119 0.86164 0.78501 0.82862 0.78034 1.21147 1.21540 1.20946 1.18957 0.90334 0.81405 1.44142 0.89920 1.45676 1.01692 0.99515 1.86045 1.22834 0.94278 0.85686 0.97134 1.23218 0.96033 0.83490 0.93502 1.21366 0.95762 1.04692 0.91767 1.22128 0.98223 0.99081 0.80201 1.86498 1.33666 1.97465 1.20147 1.46097 1.28940 1.05300 1.55286 1.16674 0.85016 0.81123 0.80283 1.90881 1.19436 1.85048 1.40313 1.27957 0.96422 0.96656 1.05158 1.66809 1.29625 0.98444 1.15893 1.21976 0.88942 1.01687 0.98459 1.26572 0.99343 0.98393 1.11503 1.98396 1.48593 1.67047 1.81884 1.84081 1.18895 0.97915 1.51076 1.22612 0.89254 0.86887 0.97091 0.93478 0.92599 0.94372 0.90671 0.88582 0.93022 0.94803 0.78157 0.77038 0.79551 0.94916 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.82 11.39 55.49 0.63 -25.19 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.22 -5.99 10.70 -15.06 -0.16 -6.15 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -14.75 3.55 -177.48 -0.63 -15.38 16 10 C 0.13 2.66 7.55 -2.96 -0.02 2.64 16 11 C 0.12 2.21 0.67 -134.02 -0.09 2.12 16 12 C -0.10 -1.78 4.81 -26.73 -0.13 -1.91 16 13 C 0.08 1.25 6.83 37.16 0.25 1.50 16 14 O -0.57 -8.75 13.66 -35.23 -0.48 -9.23 16 15 N -0.70 -10.13 4.52 -50.21 -0.23 -10.36 16 16 C 0.59 9.13 7.46 -12.65 -0.09 9.04 16 17 O -0.48 -9.32 15.46 5.24 0.08 -9.24 16 18 C 0.01 0.19 7.45 -14.47 -0.11 0.08 16 19 N -0.39 -5.28 10.59 -11.50 -0.12 -5.40 16 20 C 0.05 0.49 11.21 -19.39 -0.22 0.28 16 21 C -0.21 -1.90 6.95 29.39 0.20 -1.69 16 22 Cl 0.01 0.09 29.30 -51.86 -1.52 -1.42 16 23 S 0.23 2.06 22.31 -107.50 -2.40 -0.34 16 24 C 0.17 3.55 6.70 -2.83 -0.02 3.53 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.45 7.08 -51.93 -0.37 1.08 16 29 H 0.10 2.03 8.02 -51.92 -0.42 1.62 16 30 H 0.05 0.79 7.54 -51.93 -0.39 0.39 16 31 H 0.03 0.46 7.62 -51.93 -0.40 0.06 16 32 H 0.37 3.69 9.12 45.56 0.42 4.10 16 33 H 0.40 4.55 7.86 -40.82 -0.32 4.23 16 34 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.97 6.57 -51.93 -0.34 1.63 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -32.64 339.87 -8.10 -40.74 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.05 Total: 4.93 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.48 Total: 9.20 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.35 Total: -56.32 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.40 Total: -18.47 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.34 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.52 Total: -1.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.64 -8.10 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506106330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.766 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds