Wall clock time and date at job start Tue Mar 31 2020 16:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46989 * 240.00511 * 3 2 1 5 5 H 1.48499 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46822 * 120.00635 * 3 2 1 7 7 C 1.38816 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49504 * 179.97438 * 9 7 2 11 11 C 1.53949 * 86.11514 * 155.36266 * 10 9 7 12 12 C 1.53001 * 113.74051 * 269.15615 * 11 10 9 13 13 C 1.53000 * 109.47515 * 172.64524 * 12 11 10 14 14 O 1.42893 * 109.47544 * 178.33491 * 13 12 11 15 15 N 1.46499 * 113.74141 * 137.95997 * 11 10 9 16 16 C 1.34765 * 120.00322 * 66.89614 * 15 11 10 17 17 O 1.21639 * 120.00381 * 354.80355 * 16 15 11 18 18 C 1.47148 * 120.00269 * 174.80380 * 16 15 11 19 19 N 1.30567 * 125.53222 * 179.97438 * 18 16 15 20 20 C 1.30658 * 115.93294 * 179.73709 * 19 18 16 21 21 C 1.34437 * 115.74440 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 125.46759 * 179.97438 * 21 20 19 23 23 S 1.71074 * 109.06817 * 0.02562 * 21 20 19 24 24 C 1.47816 * 134.45343 * 359.87213 * 9 7 2 25 25 H 0.96996 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.09002 * 113.76699 * 41.06067 * 10 9 7 27 27 H 1.08992 * 113.77021 * 269.66388 * 10 9 7 28 28 H 1.09000 * 109.47170 * 292.65040 * 12 11 10 29 29 H 1.09008 * 109.47247 * 52.63991 * 12 11 10 30 30 H 1.09004 * 109.46772 * 298.33618 * 13 12 11 31 31 H 1.08998 * 109.46596 * 58.33084 * 13 12 11 32 32 H 0.96697 * 114.00095 * 179.97438 * 14 13 12 33 33 H 0.97005 * 119.99542 * 246.89659 * 15 11 10 34 34 H 1.08000 * 122.13115 * 179.97438 * 20 19 18 35 35 H 1.08996 * 113.77271 * 90.38185 * 24 9 7 36 36 H 1.09000 * 113.83529 * 318.91042 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 6 0.3659 -4.0571 2.1694 13 6 -1.0662 -4.1555 2.6987 14 8 -1.0462 -4.1701 4.1274 15 7 -0.3333 -5.2614 0.0969 16 6 0.1759 -6.4911 0.3086 17 8 1.2487 -6.6171 0.8678 18 6 -0.5658 -7.6813 -0.1369 19 7 -0.1751 -8.9183 0.0113 20 6 -0.9855 -9.8328 -0.4515 21 6 -2.1155 -9.3779 -1.0202 22 17 -3.3623 -10.3664 -1.7144 23 16 -2.1270 -7.6686 -0.9514 24 6 -0.1058 -2.7570 0.0023 25 1 -0.4850 0.8400 0.0004 26 1 2.5628 -4.0327 0.6530 27 1 1.8311 -4.2346 -0.9992 28 1 0.9490 -4.9001 2.5402 29 1 0.8166 -3.1254 2.5115 30 1 -1.6413 -3.2968 2.3522 31 1 -1.5267 -5.0729 2.3323 32 1 -1.9221 -4.2308 4.5325 33 1 -1.1507 -5.1564 -0.4148 34 1 -0.7614 -10.8870 -0.3823 35 1 -0.5320 -2.8718 -0.9943 36 1 -0.7184 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506106330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:17 Heat of formation + Delta-G solvation = -3.859211 kcal Electronic energy + Delta-G solvation = -23713.979518 eV Core-core repulsion = 19966.468320 eV Total energy + Delta-G solvation = -3747.511198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.76849 -40.84892 -39.23437 -38.01738 -37.69550 -35.43343 -33.92859 -32.14260 -31.25564 -29.09093 -27.57891 -26.87289 -25.17699 -23.72407 -22.98005 -21.14930 -20.37331 -20.07582 -18.76595 -18.50804 -18.14827 -17.15729 -17.03122 -16.76034 -16.53958 -15.99963 -15.74197 -15.45550 -15.33316 -15.13816 -14.94344 -14.40178 -13.76422 -13.46746 -13.34635 -13.33398 -13.21073 -12.90070 -12.77602 -12.58726 -12.27564 -12.12336 -12.11161 -11.78567 -11.64846 -11.35244 -10.95673 -10.87094 -10.74260 -10.65408 -10.34180 -10.03210 -8.95451 -7.91601 -5.24116 -1.14666 -0.47837 0.18405 0.84917 1.08467 1.48162 1.50924 1.56184 1.62005 1.99080 2.48726 3.09236 3.19201 3.29159 3.45161 3.57402 3.62952 3.90771 4.12173 4.23502 4.32674 4.45689 4.65060 4.72188 4.73336 4.84809 4.88752 5.11482 5.14088 5.21571 5.48469 5.57587 5.90108 6.11514 6.43225 6.92169 6.92619 6.94247 7.58224 8.50137 9.25024 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002963 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.461154 B = 9448.196234 C = 9814.653589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.054 4.054 3 Si 0.976 3.024 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.124 3.876 11 C 0.155 3.845 12 C -0.092 4.092 13 C 0.090 3.910 14 O -0.592 6.592 15 N -0.692 5.692 16 C 0.595 3.405 17 O -0.530 6.530 18 C -0.028 4.028 19 N -0.420 5.420 20 C 0.040 3.960 21 C -0.203 4.203 22 Cl 0.033 6.967 23 S 0.306 5.694 24 C 0.174 3.826 25 H 0.252 0.748 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.397 0.603 33 H 0.413 0.587 34 H 0.209 0.791 35 H 0.041 0.959 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 -19.161 -2.563 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.248 4.248 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.356 5.356 10 C -0.002 4.002 11 C 0.068 3.932 12 C -0.131 4.131 13 C 0.012 3.988 14 O -0.400 6.400 15 N -0.346 5.346 16 C 0.377 3.623 17 O -0.406 6.406 18 C -0.301 4.301 19 N -0.137 5.137 20 C -0.119 4.119 21 C -0.354 4.354 22 Cl 0.062 6.938 23 S 0.559 5.441 24 C 0.048 3.952 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.226 0.774 35 H 0.059 0.941 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.597 -18.205 -2.368 21.715 hybrid contribution -0.167 -0.161 -0.341 0.413 sum -11.764 -18.366 -2.710 21.978 Atomic orbital electron populations 1.69895 1.05954 1.25941 1.57398 1.25489 0.96649 1.00301 1.02373 0.85209 0.77305 0.79094 0.78023 1.20586 1.21568 1.20696 1.19243 0.90673 0.82881 1.43811 0.90336 1.45930 1.03357 1.00062 1.86298 1.22914 0.95676 0.84218 0.97433 1.22448 0.93960 0.83698 0.93074 1.21229 0.97758 1.02202 0.91935 1.21981 0.95860 1.00360 0.80585 1.86438 1.36143 1.97526 1.19938 1.45723 1.29287 1.04204 1.55357 1.16913 0.84492 0.81753 0.79156 1.90856 1.21546 1.85864 1.42299 1.27236 0.98994 0.95548 1.08358 1.66770 1.31271 0.99130 1.16534 1.22253 0.88901 1.02224 0.98516 1.26806 0.99344 0.99080 1.10130 1.98417 1.47513 1.66542 1.81367 1.83777 1.14828 0.97203 1.48242 1.22511 0.87565 0.87911 0.97192 0.93897 0.93823 0.93727 0.91854 0.92094 0.92789 0.92321 0.75311 0.74985 0.77400 0.94121 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.45 11.39 21.65 0.25 -53.20 16 2 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 3 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.24 -13.20 10.70 84.04 0.90 -12.30 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -31.58 3.55 -715.42 -2.54 -34.12 16 10 C 0.12 5.31 7.55 86.49 0.65 5.97 16 11 C 0.15 5.63 0.67 5.37 0.00 5.63 16 12 C -0.09 -3.47 4.81 30.59 0.15 -3.32 16 13 C 0.09 2.68 6.83 71.98 0.49 3.17 16 14 O -0.59 -17.46 13.66 -148.98 -2.03 -19.49 16 15 N -0.69 -19.33 4.52 -431.02 -1.95 -21.27 16 16 C 0.59 18.17 7.46 86.58 0.65 18.81 16 17 O -0.53 -20.82 15.46 -4.15 -0.06 -20.88 16 18 C -0.03 -0.67 7.45 87.22 0.65 -0.02 16 19 N -0.42 -10.80 10.59 -190.29 -2.02 -12.82 16 20 C 0.04 0.73 11.21 84.00 0.94 1.67 16 21 C -0.20 -3.08 6.95 66.95 0.47 -2.62 16 22 Cl 0.03 0.39 29.30 -2.72 -0.08 0.31 16 23 S 0.31 4.62 22.31 -56.49 -1.26 3.36 16 24 C 0.17 7.44 6.70 86.45 0.58 8.02 16 25 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 26 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 2.53 7.08 -2.39 -0.02 2.51 16 29 H 0.06 2.70 8.02 -2.38 -0.02 2.68 16 30 H 0.05 1.59 7.54 -2.38 -0.02 1.58 16 31 H 0.06 1.46 7.62 -2.39 -0.02 1.45 16 32 H 0.40 7.10 9.12 -74.06 -0.68 6.42 16 33 H 0.41 8.67 7.86 -92.70 -0.73 7.94 16 34 H 0.21 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 3.09 6.57 -2.39 -0.02 3.07 16 Total: -1.00 -72.05 339.87 -1.97 -74.02 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -0.25 Total: 14.73 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 5.94 Total: 22.50 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -6.26 Total: -121.41 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -2.10 Total: -40.37 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.26 Total: 3.36 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -72.05 -1.97 -74.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506106330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.165 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds