Wall clock time and date at job start Tue Mar 31 2020 16:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48492 * 109.47403 * 240.00161 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46906 * 120.00166 * 3 2 1 7 7 C 1.38813 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.49112 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11541 * 155.35433 * 10 9 7 12 12 C 1.52996 * 113.73999 * 137.95365 * 11 10 9 13 13 C 1.53009 * 109.47059 * 75.68654 * 12 11 10 14 14 O 1.42906 * 109.46807 * 184.88607 * 13 12 11 15 15 N 1.46508 * 113.73800 * 269.14944 * 11 10 9 16 16 C 1.34778 * 119.99584 * 169.41577 * 15 11 10 17 17 O 1.21706 * 119.99996 * 355.04419 * 16 15 11 18 18 C 1.46519 * 119.99827 * 175.04323 * 16 15 11 19 19 S 1.76212 * 126.17930 * 359.68934 * 18 16 15 20 20 C 1.70920 * 90.39131 * 179.97438 * 19 18 16 21 21 N 1.29359 * 110.61777 * 0.35141 * 20 19 18 22 22 C 1.31045 * 117.45615 * 359.72508 * 21 20 19 23 23 Cl 1.73597 * 123.05299 * 180.02562 * 22 21 20 24 24 C 1.47806 * 134.45931 * 359.85739 * 9 7 2 25 25 H 0.97004 * 120.00252 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.76878 * 41.05227 * 10 9 7 27 27 H 1.08996 * 113.76755 * 269.65332 * 10 9 7 28 28 H 1.09006 * 109.47280 * 195.68063 * 12 11 10 29 29 H 1.08994 * 109.47177 * 315.68401 * 12 11 10 30 30 H 1.08991 * 109.47018 * 304.88109 * 13 12 11 31 31 H 1.09001 * 109.47278 * 64.88781 * 13 12 11 32 32 H 0.96701 * 113.99673 * 180.02562 * 14 13 12 33 33 H 0.96994 * 120.00436 * 349.42176 * 15 11 10 34 34 H 1.07998 * 124.68505 * 180.02562 * 20 19 18 35 35 H 1.09007 * 113.76831 * 90.38494 * 24 9 7 36 36 H 1.08996 * 113.83801 * 318.92943 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 6 -0.3636 -5.3136 0.0694 13 6 0.2850 -6.5809 0.6301 14 8 -0.3019 -7.7290 0.0138 15 7 0.3623 -4.0583 2.1022 16 6 -0.7974 -4.0677 2.7888 17 8 -1.8573 -4.0058 2.1938 18 6 -0.7821 -4.1525 4.2514 19 16 0.6503 -4.2565 5.2724 20 6 -0.3341 -4.3053 6.6688 21 7 -1.5857 -4.2545 6.3457 22 6 -1.8778 -4.1726 5.0709 23 17 -3.5068 -4.0956 4.4758 24 6 -0.1057 -2.7571 0.0002 25 1 -0.4851 0.8401 0.0004 26 1 2.5619 -4.0327 0.6537 27 1 1.8325 -4.2346 -0.9995 28 1 -1.4161 -5.2886 0.3522 29 1 -0.2792 -5.3125 -1.0173 30 1 1.3548 -6.5640 0.4222 31 1 0.1248 -6.6251 1.7073 32 1 0.0618 -8.5701 0.3225 33 1 1.2073 -4.0349 2.5778 34 1 0.0373 -4.3746 7.6805 35 1 -0.5313 -2.8713 -0.9968 36 1 -0.7188 -2.1405 0.6575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506140476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:11 Heat of formation + Delta-G solvation = 23.592176 kcal Electronic energy + Delta-G solvation = -24285.457524 eV Core-core repulsion = 20539.136708 eV Total energy + Delta-G solvation = -3746.320817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.32720 -39.61030 -37.60588 -36.58079 -36.51346 -33.56054 -32.13641 -30.88126 -30.16341 -27.14986 -26.26992 -25.10743 -23.66582 -22.41549 -21.12912 -20.12633 -19.13992 -18.79710 -17.34999 -16.91212 -16.62399 -15.70811 -15.48865 -15.20007 -14.97998 -14.80080 -14.48756 -14.14060 -13.78836 -13.67125 -13.50733 -12.88999 -12.54722 -12.27759 -11.76190 -11.69707 -11.55271 -11.20262 -11.02899 -11.00151 -10.85515 -10.64720 -10.25075 -10.12263 -9.94152 -9.86904 -9.80195 -9.63447 -9.34653 -9.01641 -8.87039 -8.53035 -6.93082 -5.77390 -3.12384 -0.03704 0.75717 1.14219 2.07598 2.17445 3.22154 3.34573 3.37045 3.40983 3.43660 4.17812 4.29401 4.44660 4.69306 4.86439 5.02672 5.22473 5.29222 5.34504 5.42920 5.48084 5.73591 5.86261 6.11325 6.18197 6.27204 6.44088 6.59393 6.80143 7.09681 7.20768 7.27874 7.62846 7.70012 7.75554 7.95351 8.44268 9.00596 9.67795 10.53651 11.38234 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.004928 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.361114 B = 5680.056808 C = 6962.087726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.121 3.879 11 C 0.126 3.874 12 C -0.118 4.118 13 C 0.083 3.917 14 O -0.575 6.575 15 N -0.685 5.685 16 C 0.591 3.409 17 O -0.496 6.496 18 C -0.267 4.267 19 S 0.210 5.790 20 C 0.033 3.967 21 N -0.469 5.469 22 C 0.172 3.828 23 Cl 0.031 6.969 24 C 0.170 3.830 25 H 0.255 0.745 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.372 0.628 33 H 0.395 0.605 34 H 0.212 0.788 35 H 0.037 0.963 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 -14.038 11.861 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.335 5.335 10 C -0.006 4.006 11 C 0.039 3.961 12 C -0.157 4.157 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.335 5.335 16 C 0.374 3.626 17 O -0.372 6.372 18 C -0.393 4.393 19 S 0.463 5.537 20 C -0.262 4.262 21 N -0.184 5.184 22 C 0.007 3.993 23 Cl 0.059 6.941 24 C 0.044 3.956 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.229 0.771 34 H 0.229 0.771 35 H 0.055 0.945 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.938 -13.192 11.352 17.511 hybrid contribution 0.311 0.725 0.321 0.851 sum 2.248 -12.467 11.673 17.226 Atomic orbital electron populations 1.69820 1.04952 1.25588 1.55609 1.24798 0.95609 0.97492 1.02160 0.86242 0.78494 0.83349 0.77864 1.21152 1.21553 1.21144 1.18888 0.90084 0.81789 1.44944 0.90316 1.45989 1.02276 0.98899 1.86298 1.22863 0.93007 0.87405 0.97327 1.22360 0.98861 0.96172 0.78740 1.21731 1.01884 0.90968 1.01135 1.22150 0.95969 0.85796 0.95594 1.86514 1.66465 1.16328 1.68615 1.45322 1.07124 1.74348 1.06704 1.16411 0.85007 0.77841 0.83310 1.90888 1.29921 1.48110 1.68243 1.25919 0.95620 1.17567 1.00178 1.84054 1.08739 1.63354 0.97577 1.28507 0.90554 1.02318 1.04854 1.65651 1.19156 1.16759 1.16783 1.21110 0.89833 1.01148 0.87219 1.98449 1.14275 1.95848 1.85513 1.22586 0.87981 0.87900 0.97142 0.93454 0.93645 0.93209 0.89577 0.90092 0.93820 0.94423 0.78180 0.77103 0.77113 0.94542 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.22 11.39 55.49 0.63 -26.58 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.22 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -14.88 3.70 -177.53 -0.66 -15.53 16 10 C 0.12 2.25 7.93 -2.96 -0.02 2.23 16 11 C 0.13 2.29 0.61 -134.05 -0.08 2.21 16 12 C -0.12 -1.95 4.76 -26.73 -0.13 -2.07 16 13 C 0.08 1.11 6.78 37.16 0.25 1.36 16 14 O -0.57 -7.57 13.66 -35.23 -0.48 -8.05 16 15 N -0.68 -11.38 4.69 -50.43 -0.24 -11.61 16 16 C 0.59 10.41 7.40 -12.92 -0.10 10.31 16 17 O -0.50 -10.20 13.27 5.18 0.07 -10.13 16 18 C -0.27 -3.95 6.52 -36.75 -0.24 -4.19 16 19 S 0.21 2.05 22.36 -107.50 -2.40 -0.35 16 20 C 0.03 0.30 12.20 51.72 0.63 0.93 16 21 N -0.47 -6.14 10.50 -12.22 -0.13 -6.27 16 22 C 0.17 2.60 7.41 -18.39 -0.14 2.47 16 23 Cl 0.03 0.49 27.38 -51.86 -1.42 -0.93 16 24 C 0.17 4.04 6.52 -2.86 -0.02 4.02 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 27 H 0.05 0.89 8.07 -51.93 -0.42 0.48 16 28 H 0.09 1.60 6.68 -51.93 -0.35 1.26 16 29 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.04 0.52 7.88 -51.93 -0.41 0.11 16 31 H 0.04 0.49 7.84 -51.93 -0.41 0.08 16 32 H 0.37 2.98 9.12 45.56 0.42 3.40 16 33 H 0.39 5.71 7.83 -40.82 -0.32 5.39 16 34 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.08 2.31 6.96 -51.93 -0.36 1.95 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -34.72 337.01 -7.75 -42.46 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.08 Total: 4.35 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.10 Total: 10.71 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.39 Total: -60.00 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.41 Total: -18.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.40 Total: -0.35 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.42 Total: -0.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.72 -7.75 -42.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506140476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.055 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds