Wall clock time and date at job start Tue Mar 31 2020 16:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48492 * 109.47403 * 240.00161 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46906 * 120.00166 * 3 2 1 7 7 C 1.38813 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.49112 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11541 * 155.35433 * 10 9 7 12 12 C 1.52996 * 113.73999 * 137.95365 * 11 10 9 13 13 C 1.53009 * 109.47059 * 75.68654 * 12 11 10 14 14 O 1.42906 * 109.46807 * 184.88607 * 13 12 11 15 15 N 1.46508 * 113.73800 * 269.14944 * 11 10 9 16 16 C 1.34778 * 119.99584 * 169.41577 * 15 11 10 17 17 O 1.21706 * 119.99996 * 355.04419 * 16 15 11 18 18 C 1.46519 * 119.99827 * 175.04323 * 16 15 11 19 19 S 1.76212 * 126.17930 * 359.68934 * 18 16 15 20 20 C 1.70920 * 90.39131 * 179.97438 * 19 18 16 21 21 N 1.29359 * 110.61777 * 0.35141 * 20 19 18 22 22 C 1.31045 * 117.45615 * 359.72508 * 21 20 19 23 23 Cl 1.73597 * 123.05299 * 180.02562 * 22 21 20 24 24 C 1.47806 * 134.45931 * 359.85739 * 9 7 2 25 25 H 0.97004 * 120.00252 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.76878 * 41.05227 * 10 9 7 27 27 H 1.08996 * 113.76755 * 269.65332 * 10 9 7 28 28 H 1.09006 * 109.47280 * 195.68063 * 12 11 10 29 29 H 1.08994 * 109.47177 * 315.68401 * 12 11 10 30 30 H 1.08991 * 109.47018 * 304.88109 * 13 12 11 31 31 H 1.09001 * 109.47278 * 64.88781 * 13 12 11 32 32 H 0.96701 * 113.99673 * 180.02562 * 14 13 12 33 33 H 0.96994 * 120.00436 * 349.42176 * 15 11 10 34 34 H 1.07998 * 124.68505 * 180.02562 * 20 19 18 35 35 H 1.09007 * 113.76831 * 90.38494 * 24 9 7 36 36 H 1.08996 * 113.83801 * 318.92943 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 6 -0.3636 -5.3136 0.0694 13 6 0.2850 -6.5809 0.6301 14 8 -0.3019 -7.7290 0.0138 15 7 0.3623 -4.0583 2.1022 16 6 -0.7974 -4.0677 2.7888 17 8 -1.8573 -4.0058 2.1938 18 6 -0.7821 -4.1525 4.2514 19 16 0.6503 -4.2565 5.2724 20 6 -0.3341 -4.3053 6.6688 21 7 -1.5857 -4.2545 6.3457 22 6 -1.8778 -4.1726 5.0709 23 17 -3.5068 -4.0956 4.4758 24 6 -0.1057 -2.7571 0.0002 25 1 -0.4851 0.8401 0.0004 26 1 2.5619 -4.0327 0.6537 27 1 1.8325 -4.2346 -0.9995 28 1 -1.4161 -5.2886 0.3522 29 1 -0.2792 -5.3125 -1.0173 30 1 1.3548 -6.5640 0.4222 31 1 0.1248 -6.6251 1.7073 32 1 0.0618 -8.5701 0.3225 33 1 1.2073 -4.0349 2.5778 34 1 0.0373 -4.3746 7.6805 35 1 -0.5313 -2.8713 -0.9968 36 1 -0.7188 -2.1405 0.6575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506140476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:09 Heat of formation + Delta-G solvation = -5.432745 kcal Electronic energy + Delta-G solvation = -24286.716139 eV Core-core repulsion = 20539.136708 eV Total energy + Delta-G solvation = -3747.579432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.63531 -40.77916 -39.07653 -37.67774 -37.65351 -35.20685 -33.87077 -32.34190 -31.27466 -28.95170 -27.27637 -26.80231 -25.19432 -23.61274 -22.77310 -21.20362 -20.44454 -20.04266 -18.73717 -18.36226 -17.94318 -17.06239 -16.75273 -16.61601 -16.43712 -15.86184 -15.67831 -15.65777 -15.13016 -14.99895 -14.87142 -14.50848 -14.19483 -13.31559 -13.24664 -13.11502 -12.95928 -12.87292 -12.74155 -12.46768 -12.35532 -12.13984 -11.84561 -11.67982 -11.42843 -11.16089 -10.98506 -10.85917 -10.77754 -10.66656 -10.07570 -9.92019 -8.92768 -7.87190 -5.22848 -0.99942 -0.19417 0.29614 1.03015 1.18867 1.45046 1.48541 1.54919 1.91003 2.05734 2.47107 3.14066 3.30554 3.33696 3.47916 3.63444 3.69304 3.84259 4.18898 4.34862 4.41058 4.50972 4.51390 4.71915 4.73011 4.83205 4.95312 5.17248 5.23801 5.30900 5.51535 5.70575 5.92362 6.18775 6.45900 6.89421 6.96592 7.13803 7.62549 8.54936 9.28351 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.004928 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.361114 B = 5680.056808 C = 6962.087726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.228 4.228 8 H 0.094 0.906 9 N -0.633 5.633 10 C 0.129 3.871 11 C 0.153 3.847 12 C -0.113 4.113 13 C 0.093 3.907 14 O -0.593 6.593 15 N -0.679 5.679 16 C 0.588 3.412 17 O -0.538 6.538 18 C -0.313 4.313 19 S 0.288 5.712 20 C 0.055 3.945 21 N -0.498 5.498 22 C 0.167 3.833 23 Cl 0.005 6.995 24 C 0.162 3.838 25 H 0.244 0.756 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.397 0.603 33 H 0.407 0.593 34 H 0.264 0.736 35 H 0.014 0.986 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -15.703 13.896 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.356 4.356 8 H 0.111 0.889 9 N -0.359 5.359 10 C 0.004 3.996 11 C 0.065 3.935 12 C -0.152 4.152 13 C 0.015 3.985 14 O -0.401 6.401 15 N -0.330 5.330 16 C 0.373 3.627 17 O -0.416 6.416 18 C -0.439 4.439 19 S 0.542 5.458 20 C -0.238 4.238 21 N -0.214 5.214 22 C 0.000 4.000 23 Cl 0.034 6.966 24 C 0.036 3.964 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.279 0.721 35 H 0.032 0.968 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.568 -14.922 13.413 20.822 hybrid contribution -0.711 1.161 -0.229 1.381 sum 4.858 -13.761 13.183 19.666 Atomic orbital electron populations 1.70072 1.06735 1.25366 1.58169 1.25657 0.96299 1.01062 1.03219 0.85187 0.77027 0.78842 0.78482 1.20210 1.23020 1.19661 1.19384 0.90934 0.82854 1.42412 0.88862 1.46296 1.02703 1.00674 1.86256 1.23052 0.94020 0.83704 0.98800 1.21866 0.98109 0.93937 0.79580 1.21590 1.00400 0.92275 1.00962 1.21966 0.96711 0.84360 0.95436 1.86448 1.67181 1.17519 1.68963 1.45204 1.07674 1.74242 1.05930 1.16799 0.84463 0.76751 0.84674 1.90864 1.31307 1.49741 1.69672 1.25730 0.98556 1.20421 0.99230 1.83730 1.05109 1.61451 0.95462 1.29462 0.89306 0.98136 1.06921 1.65704 1.21130 1.18952 1.15566 1.21227 0.89009 1.01402 0.88327 1.98431 1.16258 1.95952 1.85994 1.22406 0.87525 0.90814 0.95675 0.94717 0.90145 0.91448 0.92352 0.90388 0.91186 0.93907 0.75347 0.75614 0.72067 0.96783 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.50 11.39 21.65 0.25 -59.25 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.23 -12.23 10.70 84.03 0.90 -11.33 16 8 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.63 -30.93 3.70 -715.57 -2.65 -33.58 16 10 C 0.13 4.54 7.93 86.48 0.69 5.22 16 11 C 0.15 5.55 0.61 5.35 0.00 5.55 16 12 C -0.11 -3.72 4.76 30.60 0.15 -3.57 16 13 C 0.09 2.27 6.78 71.99 0.49 2.76 16 14 O -0.59 -14.29 13.66 -148.98 -2.04 -16.33 16 15 N -0.68 -22.12 4.69 -431.67 -2.02 -24.14 16 16 C 0.59 21.08 7.40 86.40 0.64 21.71 16 17 O -0.54 -23.46 13.27 -4.37 -0.06 -23.51 16 18 C -0.31 -9.06 6.52 24.10 0.16 -8.90 16 19 S 0.29 4.62 22.36 -56.49 -1.26 3.36 16 20 C 0.06 0.79 12.20 130.61 1.59 2.39 16 21 N -0.50 -12.10 10.50 -192.57 -2.02 -14.13 16 22 C 0.17 5.02 7.41 84.48 0.63 5.65 16 23 Cl 0.01 0.17 27.38 -2.72 -0.07 0.10 16 24 C 0.16 8.09 6.52 86.43 0.56 8.66 16 25 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.08 2.31 8.08 -2.39 -0.02 2.29 16 27 H 0.07 2.21 8.07 -2.39 -0.02 2.20 16 28 H 0.06 2.27 6.68 -2.38 -0.02 2.25 16 29 H 0.08 2.58 8.10 -2.39 -0.02 2.56 16 30 H 0.07 1.36 7.88 -2.39 -0.02 1.35 16 31 H 0.04 1.01 7.84 -2.39 -0.02 0.99 16 32 H 0.40 5.16 9.12 -74.06 -0.68 4.48 16 33 H 0.41 10.84 7.83 -92.71 -0.73 10.12 16 34 H 0.26 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.01 0.76 8.10 -2.38 -0.02 0.74 16 36 H 0.04 2.13 6.96 -2.39 -0.02 2.12 16 Total: -1.00 -81.49 337.01 -1.83 -83.32 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -0.24 Total: 12.03 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 6.27 Total: 24.65 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -6.45 Total: -131.10 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -2.09 Total: -39.84 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.26 Total: 3.36 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.07 Total: 0.10 kcal Total: -81.49 -1.83 -83.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506140476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.887 kcal (2) G-P(sol) polarization free energy of solvation -81.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds