Wall clock time and date at job start Tue Mar 31 2020 16:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47183 * 269.99743 * 3 2 1 5 5 H 1.48502 * 109.47247 * 29.99881 * 3 2 1 6 6 H 1.48503 * 109.47104 * 149.99916 * 3 2 1 7 7 C 1.38813 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00038 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99465 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46545 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.88435 * 51.12381 * 11 10 9 13 13 C 1.55154 * 110.99938 * 175.00157 * 11 10 9 14 14 C 1.54331 * 102.94091 * 153.61731 * 13 11 10 15 15 N 1.47019 * 107.26989 * 337.80048 * 14 13 11 16 16 C 1.34776 * 125.64954 * 178.90296 * 15 14 13 17 17 O 1.21714 * 120.00131 * 180.02562 * 16 15 14 18 18 C 1.46538 * 119.99805 * 0.03183 * 16 15 14 19 19 C 1.37964 * 126.22341 * 180.02562 * 18 16 15 20 20 C 1.39792 * 107.12835 * 180.26261 * 19 18 16 21 21 Cl 1.73601 * 126.06247 * 179.75553 * 20 19 18 22 22 C 1.35717 * 107.87633 * 359.62156 * 20 19 18 23 23 Cl 1.73599 * 125.58893 * 180.14451 * 22 20 19 24 24 N 1.35668 * 108.83084 * 0.37977 * 22 20 19 25 25 H 0.96997 * 125.69465 * 179.72446 * 24 22 20 26 26 C 1.47429 * 108.70192 * 359.17538 * 15 14 13 27 27 H 0.97002 * 119.99983 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99994 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47418 * 60.00218 * 10 9 7 30 30 H 1.08992 * 109.47342 * 299.99392 * 10 9 7 31 31 H 1.09001 * 110.72741 * 35.25216 * 13 11 10 32 32 H 1.09000 * 110.87378 * 272.04592 * 13 11 10 33 33 H 1.09002 * 109.87639 * 218.39004 * 14 13 11 34 34 H 1.08992 * 110.01305 * 97.29502 * 14 13 11 35 35 H 1.08002 * 126.43190 * 359.97438 * 19 18 16 36 36 H 1.09000 * 110.36626 * 142.73821 * 26 15 14 37 37 H 1.09001 * 110.36545 * 265.05658 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0011 12 1 5.8816 -1.4919 0.7938 13 6 6.4267 -3.5083 0.1273 14 6 7.7668 -3.1561 -0.5525 15 7 7.5151 -2.0199 -1.4508 16 6 8.4389 -1.4009 -2.2123 17 8 8.1159 -0.4658 -2.9213 18 6 9.8323 -1.8539 -2.1867 19 6 10.8776 -1.3167 -2.9094 20 6 12.0215 -2.0532 -2.5882 21 17 13.6153 -1.7958 -3.2265 22 6 11.6658 -3.0032 -1.6866 23 17 12.7349 -4.1709 -0.9744 24 7 10.3368 -2.8942 -1.4370 25 1 9.8267 -3.4554 -0.8322 26 6 6.0860 -1.6655 -1.3758 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3621 0.0007 29 1 3.8491 -3.0423 -0.8891 30 1 3.8485 -3.0426 0.8908 31 1 5.9278 -4.3205 -0.4015 32 1 6.5824 -3.7698 1.1739 33 1 8.1267 -4.0099 -1.1267 34 1 8.5047 -2.8777 0.1997 35 1 10.8215 -0.4865 -3.5979 36 1 5.9598 -0.5843 -1.4327 37 1 5.5311 -2.1556 -2.1758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567135714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:07 Heat of formation + Delta-G solvation = 23.323942 kcal Electronic energy + Delta-G solvation = -23100.364794 eV Core-core repulsion = 19351.988640 eV Total energy + Delta-G solvation = -3748.376154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07039 -39.91159 -37.90282 -37.31099 -36.86691 -35.04026 -32.63844 -31.64545 -30.96706 -29.85470 -29.00992 -26.00903 -24.20880 -22.27759 -21.93632 -21.37851 -20.83808 -20.38400 -18.42269 -17.59951 -17.00268 -16.52089 -15.93031 -15.48393 -15.07984 -14.78784 -14.53087 -14.23484 -13.98740 -13.93476 -13.72416 -13.21627 -12.96563 -12.76089 -12.47704 -12.37672 -12.26354 -12.19830 -11.92321 -11.85297 -11.30886 -11.08798 -10.84213 -10.81492 -10.66795 -10.39736 -10.16784 -9.63614 -9.51855 -9.03005 -8.95509 -8.69179 -7.30503 -5.81300 -3.18126 0.74384 0.94815 1.67390 1.75013 2.46647 2.84636 2.92310 3.35808 3.39441 3.44778 3.99873 4.19641 4.33441 4.46167 4.55550 4.56517 4.77605 4.92716 4.97357 5.16338 5.24949 5.48390 5.56590 5.58746 5.63923 5.67822 5.71529 5.86999 5.94210 6.02289 6.10734 6.41481 6.48108 6.57611 7.12394 7.77057 7.92835 8.37107 9.15199 9.87619 10.05861 11.36779 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.002464 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.008255 B =11360.972912 C =12233.408468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.756 5.756 10 C 0.170 3.830 11 C -0.110 4.110 12 H 0.087 0.913 13 C -0.120 4.120 14 C 0.085 3.915 15 N -0.616 5.616 16 C 0.602 3.398 17 O -0.513 6.513 18 C -0.009 4.009 19 C -0.087 4.087 20 C -0.098 4.098 21 Cl -0.028 7.028 22 C 0.094 3.906 23 Cl 0.004 6.996 24 N -0.526 5.526 25 H 0.428 0.572 26 C 0.114 3.886 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.169 0.831 36 H 0.085 0.915 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.384 -10.470 -1.680 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.039 4.039 15 N -0.350 5.350 16 C 0.390 3.610 17 O -0.389 6.389 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.133 4.133 21 Cl 0.001 6.999 22 C -0.051 4.051 23 Cl 0.032 6.968 24 N -0.132 5.132 25 H 0.274 0.726 26 C -0.007 4.007 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.187 0.813 36 H 0.103 0.897 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.105 -10.176 -2.002 29.958 hybrid contribution 0.659 0.713 0.444 1.068 sum 28.764 -9.463 -1.557 30.320 Atomic orbital electron populations 1.69698 1.05128 1.25942 1.57206 1.24676 0.95236 0.97266 1.01766 0.86574 0.79141 0.84938 0.77998 1.20841 1.21651 1.20387 1.19019 0.80481 0.94756 1.43544 0.89158 1.42714 1.04169 1.02068 1.91272 1.20557 0.86323 0.89678 0.99217 1.22636 0.97310 0.96447 0.96599 0.89485 1.22623 0.93081 0.98672 1.01502 1.22288 0.99986 0.88815 0.92808 1.48474 1.10294 1.33157 1.43100 1.16428 0.82042 0.82402 0.80123 1.90924 1.79655 1.27744 1.40531 1.20437 0.94578 0.95001 1.02291 1.21170 0.88047 1.01004 1.01106 1.19629 0.89185 1.00935 1.03507 1.98356 1.20153 1.96091 1.85300 1.20640 0.83678 0.98280 1.02477 1.98431 1.60013 1.55799 1.82509 1.42632 1.06542 1.27798 1.36209 0.72649 1.22422 0.78062 1.02228 0.98026 0.92971 0.80593 0.95016 0.94800 0.89516 0.89317 0.91369 0.91522 0.81318 0.89698 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.01 27.74 -169.99 -4.71 17.29 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.85 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.76 -17.06 5.35 -59.90 -0.32 -17.38 16 10 C 0.17 2.89 5.72 -4.04 -0.02 2.87 16 11 C -0.11 -1.41 3.03 -88.59 -0.27 -1.68 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.01 6.42 -24.89 -0.16 -1.17 16 14 C 0.08 0.65 5.11 -3.06 -0.02 0.64 16 15 N -0.62 -7.21 3.33 -172.25 -0.57 -7.78 16 16 C 0.60 7.98 7.82 -12.92 -0.10 7.88 16 17 O -0.51 -8.74 17.14 5.18 0.09 -8.65 16 18 C -0.01 -0.10 6.89 -81.94 -0.56 -0.66 16 19 C -0.09 -0.90 10.64 -39.10 -0.42 -1.32 16 20 C -0.10 -0.93 6.66 -39.90 -0.27 -1.20 16 21 Cl -0.03 -0.24 29.12 -51.86 -1.51 -1.75 16 22 C 0.09 0.80 7.75 -16.76 -0.13 0.67 16 23 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.48 16 24 N -0.53 -4.23 5.62 -6.51 -0.04 -4.26 16 25 H 0.43 2.47 4.92 -40.82 -0.20 2.27 16 26 C 0.11 1.57 6.32 -2.65 -0.02 1.55 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.36 8.06 5.53 -40.82 -0.23 7.83 16 29 H 0.03 0.55 7.97 -51.93 -0.41 0.13 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.39 7.23 -51.93 -0.38 0.02 16 34 H 0.07 0.40 7.08 -51.93 -0.37 0.04 16 35 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.08 1.15 7.90 -51.93 -0.41 0.73 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -33.01 340.02 -9.00 -42.02 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.11 Total: 4.45 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.21 Total: 0.66 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.16 Total: -57.66 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -3.02 Total: -3.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.01 -9.00 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567135714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.339 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds