Wall clock time and date at job start Tue Mar 31 2020 16:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47183 * 269.99743 * 3 2 1 5 5 H 1.48502 * 109.47247 * 29.99881 * 3 2 1 6 6 H 1.48503 * 109.47104 * 149.99916 * 3 2 1 7 7 C 1.38813 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00038 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99465 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46545 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.88435 * 51.12381 * 11 10 9 13 13 C 1.55154 * 110.99938 * 175.00157 * 11 10 9 14 14 C 1.54331 * 102.94091 * 153.61731 * 13 11 10 15 15 N 1.47019 * 107.26989 * 337.80048 * 14 13 11 16 16 C 1.34776 * 125.64954 * 178.90296 * 15 14 13 17 17 O 1.21714 * 120.00131 * 180.02562 * 16 15 14 18 18 C 1.46538 * 119.99805 * 0.03183 * 16 15 14 19 19 C 1.37964 * 126.22341 * 180.02562 * 18 16 15 20 20 C 1.39792 * 107.12835 * 180.26261 * 19 18 16 21 21 Cl 1.73601 * 126.06247 * 179.75553 * 20 19 18 22 22 C 1.35717 * 107.87633 * 359.62156 * 20 19 18 23 23 Cl 1.73599 * 125.58893 * 180.14451 * 22 20 19 24 24 N 1.35668 * 108.83084 * 0.37977 * 22 20 19 25 25 H 0.96997 * 125.69465 * 179.72446 * 24 22 20 26 26 C 1.47429 * 108.70192 * 359.17538 * 15 14 13 27 27 H 0.97002 * 119.99983 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99994 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47418 * 60.00218 * 10 9 7 30 30 H 1.08992 * 109.47342 * 299.99392 * 10 9 7 31 31 H 1.09001 * 110.72741 * 35.25216 * 13 11 10 32 32 H 1.09000 * 110.87378 * 272.04592 * 13 11 10 33 33 H 1.09002 * 109.87639 * 218.39004 * 14 13 11 34 34 H 1.08992 * 110.01305 * 97.29502 * 14 13 11 35 35 H 1.08002 * 126.43190 * 359.97438 * 19 18 16 36 36 H 1.09000 * 110.36626 * 142.73821 * 26 15 14 37 37 H 1.09001 * 110.36545 * 265.05658 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0011 12 1 5.8816 -1.4919 0.7938 13 6 6.4267 -3.5083 0.1273 14 6 7.7668 -3.1561 -0.5525 15 7 7.5151 -2.0199 -1.4508 16 6 8.4389 -1.4009 -2.2123 17 8 8.1159 -0.4658 -2.9213 18 6 9.8323 -1.8539 -2.1867 19 6 10.8776 -1.3167 -2.9094 20 6 12.0215 -2.0532 -2.5882 21 17 13.6153 -1.7958 -3.2265 22 6 11.6658 -3.0032 -1.6866 23 17 12.7349 -4.1709 -0.9744 24 7 10.3368 -2.8942 -1.4370 25 1 9.8267 -3.4554 -0.8322 26 6 6.0860 -1.6655 -1.3758 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3621 0.0007 29 1 3.8491 -3.0423 -0.8891 30 1 3.8485 -3.0426 0.8908 31 1 5.9278 -4.3205 -0.4015 32 1 6.5824 -3.7698 1.1739 33 1 8.1267 -4.0099 -1.1267 34 1 8.5047 -2.8777 0.1997 35 1 10.8215 -0.4865 -3.5979 36 1 5.9598 -0.5843 -1.4327 37 1 5.5311 -2.1556 -2.1758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567135714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:07 Heat of formation + Delta-G solvation = 1.203185 kcal Electronic energy + Delta-G solvation = -23101.324022 eV Core-core repulsion = 19351.988640 eV Total energy + Delta-G solvation = -3749.335382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83111 -40.84116 -38.95840 -37.94573 -37.55624 -36.66691 -34.17046 -32.72006 -32.29533 -30.66377 -30.08251 -27.37285 -25.41162 -23.71289 -22.87801 -22.23062 -21.62068 -21.49905 -19.75831 -19.05415 -17.84047 -17.56121 -16.82955 -16.63612 -16.27457 -15.79987 -15.66990 -15.60317 -15.01736 -14.84415 -14.72100 -14.50998 -14.22335 -14.05003 -13.76362 -13.48914 -13.14222 -13.03091 -12.91517 -12.85462 -12.52302 -12.27981 -12.08472 -11.98716 -11.91623 -11.80557 -11.66997 -11.44972 -10.99682 -10.27051 -9.94660 -9.42800 -9.30347 -8.04111 -5.36908 -0.05446 0.27035 0.98903 0.99393 1.36055 1.39745 1.45403 1.58407 2.00178 2.13289 2.46342 3.17108 3.28415 3.43969 3.46809 3.68423 3.76094 3.95321 4.06764 4.11689 4.24209 4.39195 4.40834 4.52255 4.69760 4.77901 4.87788 4.95457 4.99472 5.04932 5.17092 5.22509 5.35672 5.75686 5.80284 6.19755 6.22153 6.79433 7.07192 7.84025 8.00021 9.17315 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.002464 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.008255 B =11360.972912 C =12233.408468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.165 3.835 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.108 4.108 14 C 0.078 3.922 15 N -0.614 5.614 16 C 0.599 3.401 17 O -0.564 6.564 18 C -0.019 4.019 19 C -0.091 4.091 20 C -0.111 4.111 21 Cl -0.024 7.024 22 C 0.106 3.894 23 Cl 0.024 6.976 24 N -0.509 5.509 25 H 0.440 0.560 26 C 0.113 3.887 27 H 0.257 0.743 28 H 0.364 0.636 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.056 0.944 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.520 -11.987 -0.533 33.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.407 5.407 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.105 0.895 13 C -0.147 4.147 14 C -0.044 4.044 15 N -0.346 5.346 16 C 0.389 3.611 17 O -0.443 6.443 18 C -0.133 4.133 19 C -0.118 4.118 20 C -0.145 4.145 21 Cl 0.005 6.995 22 C -0.039 4.039 23 Cl 0.052 6.948 24 N -0.116 5.116 25 H 0.288 0.712 26 C -0.009 4.009 27 H 0.066 0.934 28 H 0.197 0.803 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.184 0.816 36 H 0.075 0.925 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 31.295 -11.770 -0.813 33.445 hybrid contribution -0.263 1.018 0.083 1.054 sum 31.032 -10.753 -0.731 32.850 Atomic orbital electron populations 1.69867 1.07024 1.26601 1.59839 1.25454 0.96045 1.01030 1.02883 0.85508 0.78752 0.80206 0.77912 1.21026 1.22161 1.17663 1.19050 0.82737 0.93495 1.40907 0.92002 1.42795 1.02568 1.04365 1.91013 1.20762 0.88729 0.87323 0.99249 1.22448 0.94677 0.99215 0.95755 0.89461 1.22647 0.92269 0.96134 1.03605 1.22617 1.00394 0.88312 0.93058 1.48477 1.09076 1.33872 1.43181 1.16722 0.83001 0.81816 0.79518 1.90891 1.80633 1.30068 1.42755 1.19934 0.93248 0.96380 1.03748 1.21269 0.88538 1.01042 1.00966 1.19674 0.89250 1.01395 1.04198 1.98357 1.19683 1.96125 1.85325 1.20716 0.83859 0.97855 1.01503 1.98448 1.59366 1.54894 1.82071 1.42492 1.06366 1.27061 1.35723 0.71235 1.22247 0.79663 1.00486 0.98522 0.93367 0.80347 0.95072 0.94032 0.88629 0.86494 0.88567 0.88972 0.81622 0.92537 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.90 13.97 21.65 0.30 -62.59 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.95 45.96 27.74 68.60 1.90 47.86 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 7 C -0.23 -12.89 10.47 84.03 0.88 -12.01 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 N -0.76 -33.92 5.35 -343.44 -1.84 -35.76 16 10 C 0.17 5.40 5.72 86.38 0.49 5.89 16 11 C -0.10 -2.36 3.03 -9.48 -0.03 -2.39 16 12 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.11 -1.38 6.42 31.78 0.20 -1.17 16 14 C 0.08 0.89 5.11 86.73 0.44 1.33 16 15 N -0.61 -13.26 3.33 -817.07 -2.72 -15.98 16 16 C 0.60 15.44 7.82 86.41 0.68 16.11 16 17 O -0.56 -19.67 17.14 -4.39 -0.08 -19.75 16 18 C -0.02 -0.37 6.89 40.30 0.28 -0.10 16 19 C -0.09 -1.80 10.64 22.58 0.24 -1.56 16 20 C -0.11 -1.90 6.66 22.06 0.15 -1.75 16 21 Cl -0.02 -0.38 29.12 -2.72 -0.08 -0.45 16 22 C 0.11 1.51 7.75 83.52 0.65 2.15 16 23 Cl 0.02 0.26 29.13 -2.72 -0.08 0.18 16 24 N -0.51 -6.59 5.62 -174.52 -0.98 -7.57 16 25 H 0.44 3.20 4.92 -92.71 -0.46 2.75 16 26 C 0.11 3.04 6.32 86.78 0.55 3.59 16 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.36 15.82 5.53 -92.71 -0.51 15.31 16 29 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.11 8.04 -2.39 -0.02 1.09 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.63 7.23 -2.39 -0.02 0.62 16 34 H 0.09 0.65 7.08 -2.39 -0.02 0.63 16 35 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 37 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 Total: -1.00 -74.37 340.02 1.54 -72.84 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.11 Total: 14.34 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.00 Total: 6.89 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -5.24 Total: -121.90 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.08 Total: -19.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.28 kcal Total: -74.37 1.54 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567135714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.038 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds