Wall clock time and date at job start Tue Mar 31 2020 16:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 120.00382 * 2 1 4 4 H 1.48500 * 109.46761 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46965 * 119.99935 * 3 2 1 6 6 H 1.48493 * 109.47402 * 240.00189 * 3 2 1 7 7 C 1.40320 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 159.52269 * 7 2 1 9 9 C 1.40510 * 119.99710 * 339.52818 * 7 2 1 10 10 C 1.44188 * 123.71993 * 335.40850 * 9 7 2 11 11 C 1.32758 * 114.43246 * 179.75962 * 10 9 7 12 12 S 1.75473 * 111.37001 * 0.49780 * 11 10 9 13 13 C 1.39588 * 123.71647 * 155.70494 * 9 7 2 14 14 C 1.46174 * 125.22927 * 359.96160 * 13 9 7 15 15 O 1.21785 * 120.00423 * 0.02562 * 14 13 9 16 16 N 1.34784 * 119.99588 * 180.02562 * 14 13 9 17 17 C 1.39832 * 119.99866 * 179.97438 * 16 14 13 18 18 N 1.31130 * 126.03205 * 0.02743 * 17 16 14 19 19 N 1.40000 * 108.46794 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.82402 * 180.02562 * 19 18 17 21 21 C 1.34813 * 108.34950 * 359.97438 * 19 18 17 22 22 C 1.36353 * 107.73876 * 359.73059 * 21 19 18 23 23 C 1.48453 * 126.24950 * 180.29288 * 22 21 19 24 24 N 1.33671 * 126.31076 * 180.17928 * 23 22 21 25 25 N 1.28573 * 109.85684 * 179.97438 * 24 23 22 26 26 N 1.28924 * 109.71459 * 0.02562 * 25 24 23 27 27 H 0.96998 * 126.43292 * 179.97438 * 26 25 24 28 28 N 1.31987 * 126.30466 * 359.87290 * 23 22 21 29 29 H 0.97000 * 120.00471 * 174.00614 * 1 2 3 30 30 H 1.07997 * 122.78584 * 359.96065 * 10 9 7 31 31 H 1.07999 * 124.30966 * 180.23954 * 11 10 9 32 32 H 0.96999 * 120.00099 * 359.97438 * 16 14 13 33 33 H 1.08002 * 126.13242 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2755 2.7464 0.0006 5 1 3.0942 1.6962 1.2125 6 1 3.0942 1.6964 -1.2124 7 6 2.0079 -1.2152 -0.0005 8 1 3.0368 -1.2446 -0.3278 9 6 1.3719 -2.3938 0.4245 10 6 0.2461 -2.4157 1.3252 11 6 -0.2138 -3.6304 1.6000 12 16 0.7177 -4.8682 0.7759 13 6 1.7639 -3.6728 0.0261 14 6 2.8739 -3.9715 -0.8770 15 8 3.5395 -3.0651 -1.3444 16 7 3.1606 -5.2502 -1.1923 17 6 4.2221 -5.5359 -2.0566 18 7 5.0121 -4.6571 -2.6249 19 7 5.9442 -5.3428 -3.4129 20 1 6.6471 -4.9365 -3.9437 21 6 5.6988 -6.6642 -3.3073 22 6 4.6377 -6.8237 -2.4660 23 6 4.0276 -8.1140 -2.0575 24 7 2.9853 -8.2717 -1.2356 25 7 2.7207 -9.5226 -1.1009 26 7 3.5475 -10.2201 -1.8024 27 1 3.5671 -11.1870 -1.8766 28 7 4.4109 -9.3166 -2.4434 29 1 -0.4851 -0.8354 -0.0877 30 1 -0.1890 -1.5182 1.7393 31 1 -1.0516 -3.8312 2.2512 32 1 2.6307 -5.9722 -0.8198 33 1 6.2472 -7.4549 -3.7977 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581859693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:49 Heat of formation + Delta-G solvation = 190.440186 kcal Electronic energy + Delta-G solvation = -24590.150599 eV Core-core repulsion = 20782.250112 eV Total energy + Delta-G solvation = -3807.900487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17879 -41.14377 -38.30694 -36.43476 -34.27816 -33.55357 -33.02025 -32.97880 -30.38507 -29.75352 -28.85822 -25.95793 -24.83101 -23.39257 -23.00665 -21.73263 -20.52335 -19.49421 -19.25767 -19.01159 -17.75892 -17.39484 -16.54336 -16.35464 -15.50077 -14.92415 -14.81198 -14.57597 -14.17840 -13.96850 -13.78412 -13.50223 -13.18172 -12.99347 -12.24646 -12.17232 -11.93229 -11.48378 -11.36101 -11.08903 -10.98110 -10.83546 -10.70958 -10.47332 -10.46528 -10.41673 -10.05646 -9.69684 -9.13886 -8.67857 -8.52514 -7.97741 -7.75664 -7.32923 -7.30116 -4.59360 0.79275 1.56344 1.98848 2.06661 2.37132 2.76918 2.99641 3.07826 3.12670 3.15028 3.34410 3.55967 3.60892 3.72848 3.92389 4.04618 4.17154 4.46874 4.87330 5.10992 5.14838 5.25428 5.55806 5.63974 5.86207 6.03022 6.40713 6.44097 6.72419 6.99676 7.15460 7.19419 7.26692 7.37691 7.60721 7.80211 7.93227 8.11427 8.41437 8.47980 8.71342 9.45784 9.76434 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003867 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.707753 B = 7239.116633 C = 8947.571385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.419 4.419 8 H 0.111 0.889 9 C 0.114 3.886 10 C -0.145 4.145 11 C -0.184 4.184 12 S -0.023 6.023 13 C -0.436 4.436 14 C 0.586 3.414 15 O -0.516 6.516 16 N -0.646 5.646 17 C 0.362 3.638 18 N -0.272 5.272 19 N -0.466 5.466 20 H 0.446 0.554 21 C 0.129 3.871 22 C -0.212 4.212 23 C 0.304 3.696 24 N -0.304 5.304 25 N 0.016 4.984 26 N -0.305 5.305 27 H 0.467 0.533 28 N -0.311 5.311 29 H 0.302 0.698 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.420 0.580 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 -14.199 -4.305 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.129 0.871 9 C 0.103 3.897 10 C -0.178 4.178 11 C -0.319 4.319 12 S 0.233 5.767 13 C -0.555 4.555 14 C 0.384 3.616 15 O -0.393 6.393 16 N -0.298 5.298 17 C 0.101 3.899 18 N -0.103 5.103 19 N -0.171 5.171 20 H 0.291 0.709 21 C -0.027 4.027 22 C -0.231 4.231 23 C 0.024 3.976 24 N -0.182 5.182 25 N 0.019 4.981 26 N -0.151 5.151 27 H 0.321 0.679 28 N -0.155 5.155 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.259 0.741 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.985 -12.562 -4.401 15.032 hybrid contribution 0.249 -1.957 -0.214 1.985 sum 7.234 -14.519 -4.615 16.865 Atomic orbital electron populations 1.70430 1.08389 1.34662 1.26165 1.27574 0.95653 1.05276 0.91045 0.83501 0.75567 0.72616 0.78756 1.19651 1.19565 1.19343 1.21041 1.02044 0.91294 1.30550 0.87104 1.17869 0.89586 0.92148 0.90051 1.21539 0.98760 0.96966 1.00567 1.24995 1.04373 0.96729 1.05764 1.83017 1.30409 1.11792 1.51491 1.22227 1.14046 0.94906 1.24309 1.17038 0.83589 0.80347 0.80576 1.90761 1.50936 1.43746 1.53867 1.43490 1.29806 1.10747 1.45710 1.19316 0.90047 0.88920 0.91648 1.78348 1.04347 1.14472 1.13165 1.46260 1.28069 1.03945 1.38808 0.70889 1.22384 0.95689 0.88189 0.96415 1.16826 1.05567 0.86987 1.13725 1.22583 0.91163 0.91715 0.92188 1.75400 1.15898 1.07507 1.19416 1.78357 1.11726 0.98378 1.09594 1.50936 1.20570 1.12145 1.31480 0.67897 1.78802 1.16567 0.98604 1.21516 0.88393 0.85105 0.84022 0.74066 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.46 12.49 55.57 0.69 -18.77 16 2 C 0.03 0.72 5.24 -17.28 -0.09 0.63 16 3 Si 1.07 21.38 29.98 -169.99 -5.10 16.28 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.42 -11.36 8.44 -37.94 -0.32 -11.68 16 8 H 0.11 3.18 6.13 -52.49 -0.32 2.86 16 9 C 0.11 3.03 5.40 -106.20 -0.57 2.46 16 10 C -0.14 -3.43 8.19 -39.12 -0.32 -3.75 16 11 C -0.18 -3.90 11.07 28.86 0.32 -3.58 16 12 S -0.02 -0.50 22.25 -107.50 -2.39 -2.90 16 13 C -0.44 -11.27 6.50 -35.89 -0.23 -11.50 16 14 C 0.59 15.17 7.73 -13.07 -0.10 15.07 16 15 O -0.52 -14.60 13.18 5.11 0.07 -14.53 16 16 N -0.65 -14.27 5.43 -12.29 -0.07 -14.34 16 17 C 0.36 7.18 7.81 -154.41 -1.21 5.97 16 18 N -0.27 -5.35 10.89 31.56 0.34 -5.00 16 19 N -0.47 -5.91 7.32 30.62 0.22 -5.69 16 20 H 0.45 3.74 8.96 -182.67 -1.64 2.11 16 21 C 0.13 1.47 11.93 -16.92 -0.20 1.27 16 22 C -0.21 -3.30 6.10 -105.17 -0.64 -3.94 16 23 C 0.30 4.54 8.14 -156.46 -1.27 3.27 16 24 N -0.30 -4.86 10.75 32.13 0.35 -4.51 16 25 N 0.02 0.21 13.42 60.35 0.81 1.02 16 26 N -0.30 -2.95 8.44 60.35 0.51 -2.44 16 27 H 0.47 2.15 8.96 -331.92 -2.98 -0.83 16 28 N -0.31 -3.75 12.89 32.14 0.41 -3.34 16 29 H 0.30 7.71 6.22 -40.82 -0.25 7.45 16 30 H 0.13 3.02 6.79 -52.49 -0.36 2.67 16 31 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.42 8.75 6.24 -40.82 -0.25 8.49 16 33 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -34.62 314.34 -9.49 -44.11 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.44 Total: 11.16 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.64 Total: -5.79 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 3.27 Total: -53.08 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.10 Total: 16.28 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.39 Total: -2.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.62 -9.49 -44.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.554 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds