Wall clock time and date at job start Tue Mar 31 2020 16:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86800 * 120.00382 * 2 1 4 4 H 1.48500 * 109.46761 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46965 * 119.99935 * 3 2 1 6 6 H 1.48493 * 109.47402 * 240.00189 * 3 2 1 7 7 C 1.40320 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 159.52269 * 7 2 1 9 9 C 1.40510 * 119.99710 * 339.52818 * 7 2 1 10 10 C 1.44188 * 123.71993 * 335.40850 * 9 7 2 11 11 C 1.32758 * 114.43246 * 179.75962 * 10 9 7 12 12 S 1.75473 * 111.37001 * 0.49780 * 11 10 9 13 13 C 1.39588 * 123.71647 * 155.70494 * 9 7 2 14 14 C 1.46174 * 125.22927 * 359.96160 * 13 9 7 15 15 O 1.21785 * 120.00423 * 0.02562 * 14 13 9 16 16 N 1.34784 * 119.99588 * 180.02562 * 14 13 9 17 17 C 1.39832 * 119.99866 * 179.97438 * 16 14 13 18 18 N 1.31130 * 126.03205 * 0.02743 * 17 16 14 19 19 N 1.40000 * 108.46794 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.82402 * 180.02562 * 19 18 17 21 21 C 1.34813 * 108.34950 * 359.97438 * 19 18 17 22 22 C 1.36353 * 107.73876 * 359.73059 * 21 19 18 23 23 C 1.48453 * 126.24950 * 180.29288 * 22 21 19 24 24 N 1.33671 * 126.31076 * 180.17928 * 23 22 21 25 25 N 1.28573 * 109.85684 * 179.97438 * 24 23 22 26 26 N 1.28924 * 109.71459 * 0.02562 * 25 24 23 27 27 H 0.96998 * 126.43292 * 179.97438 * 26 25 24 28 28 N 1.31987 * 126.30466 * 359.87290 * 23 22 21 29 29 H 0.97000 * 120.00471 * 174.00614 * 1 2 3 30 30 H 1.07997 * 122.78584 * 359.96065 * 10 9 7 31 31 H 1.07999 * 124.30966 * 180.23954 * 11 10 9 32 32 H 0.96999 * 120.00099 * 359.97438 * 16 14 13 33 33 H 1.08002 * 126.13242 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2755 2.7464 0.0006 5 1 3.0942 1.6962 1.2125 6 1 3.0942 1.6964 -1.2124 7 6 2.0079 -1.2152 -0.0005 8 1 3.0368 -1.2446 -0.3278 9 6 1.3719 -2.3938 0.4245 10 6 0.2461 -2.4157 1.3252 11 6 -0.2138 -3.6304 1.6000 12 16 0.7177 -4.8682 0.7759 13 6 1.7639 -3.6728 0.0261 14 6 2.8739 -3.9715 -0.8770 15 8 3.5395 -3.0651 -1.3444 16 7 3.1606 -5.2502 -1.1923 17 6 4.2221 -5.5359 -2.0566 18 7 5.0121 -4.6571 -2.6249 19 7 5.9442 -5.3428 -3.4129 20 1 6.6471 -4.9365 -3.9437 21 6 5.6988 -6.6642 -3.3073 22 6 4.6377 -6.8237 -2.4660 23 6 4.0276 -8.1140 -2.0575 24 7 2.9853 -8.2717 -1.2356 25 7 2.7207 -9.5226 -1.1009 26 7 3.5475 -10.2201 -1.8024 27 1 3.5671 -11.1870 -1.8766 28 7 4.4109 -9.3166 -2.4434 29 1 -0.4851 -0.8354 -0.0877 30 1 -0.1890 -1.5182 1.7393 31 1 -1.0516 -3.8312 2.2512 32 1 2.6307 -5.9722 -0.8198 33 1 6.2472 -7.4549 -3.7977 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581859693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:49 Heat of formation + Delta-G solvation = 164.031114 kcal Electronic energy + Delta-G solvation = -24591.295782 eV Core-core repulsion = 20782.250112 eV Total energy + Delta-G solvation = -3809.045670 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.18748 -42.39436 -40.14748 -38.28590 -35.76682 -34.89242 -34.82097 -33.99072 -31.84628 -30.88944 -30.66025 -27.84588 -25.84742 -24.79032 -24.43221 -23.35584 -21.73322 -21.07506 -20.89243 -20.40842 -19.25764 -18.57799 -18.17431 -17.55184 -17.08579 -16.37913 -16.30956 -15.88180 -15.84176 -15.52759 -15.23357 -15.10554 -14.84701 -14.38389 -14.06012 -13.75798 -13.29458 -13.16374 -12.76728 -12.52947 -12.38269 -12.06182 -12.04382 -12.01350 -11.85818 -11.83248 -11.76937 -11.46979 -10.97591 -10.47371 -9.93793 -9.70520 -9.41033 -9.22788 -9.12712 -6.57251 -0.17866 0.14491 0.55211 1.02437 1.21113 1.26087 1.40321 1.48074 1.59599 1.68912 1.80531 1.82444 2.02829 2.25976 2.35960 2.58721 2.86300 3.12971 3.14729 3.87039 3.97208 4.21211 4.27348 4.42709 4.53337 4.60181 4.81174 4.94303 5.17850 5.31676 5.34757 5.69407 5.77191 5.82448 5.90488 6.12472 6.43654 6.47876 6.65354 6.90071 7.12817 7.56003 7.80854 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003867 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.707753 B = 7239.116633 C = 8947.571385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.003 3.997 3 Si 1.119 2.881 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.093 3.907 10 C -0.171 4.171 11 C -0.163 4.163 12 S 0.025 5.975 13 C -0.472 4.472 14 C 0.578 3.422 15 O -0.553 6.553 16 N -0.644 5.644 17 C 0.330 3.670 18 N -0.327 5.327 19 N -0.446 5.446 20 H 0.465 0.535 21 C 0.171 3.829 22 C -0.232 4.232 23 C 0.292 3.708 24 N -0.346 5.346 25 N 0.010 4.990 26 N -0.270 5.270 27 H 0.489 0.511 28 N -0.294 5.294 29 H 0.292 0.708 30 H 0.133 0.867 31 H 0.187 0.813 32 H 0.424 0.576 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -16.552 -4.753 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.082 3.918 10 C -0.204 4.204 11 C -0.297 4.297 12 S 0.281 5.719 13 C -0.590 4.590 14 C 0.376 3.624 15 O -0.433 6.433 16 N -0.295 5.295 17 C 0.070 3.930 18 N -0.158 5.158 19 N -0.155 5.155 20 H 0.314 0.686 21 C 0.015 3.985 22 C -0.251 4.251 23 C 0.010 3.990 24 N -0.224 5.224 25 N 0.014 4.986 26 N -0.122 5.122 27 H 0.348 0.652 28 N -0.139 5.139 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.204 0.796 32 H 0.264 0.736 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.638 -14.994 -4.860 17.515 hybrid contribution 0.141 -1.588 -0.181 1.604 sum 7.779 -16.582 -5.041 18.997 Atomic orbital electron populations 1.70516 1.08520 1.33917 1.27405 1.28775 0.95784 1.07453 0.89663 0.82977 0.74880 0.69497 0.79147 1.17969 1.18187 1.19456 1.21028 1.01339 0.93154 1.33266 0.89952 1.18333 0.90692 0.92444 0.90328 1.21430 0.99232 0.98160 1.01615 1.25520 1.04251 0.95541 1.04436 1.82730 1.28787 1.10124 1.50229 1.22729 1.14972 0.96532 1.24771 1.17253 0.83431 0.81296 0.80416 1.90715 1.52204 1.45176 1.55224 1.43116 1.30787 1.09326 1.46262 1.19557 0.90072 0.91063 0.92336 1.78161 1.05964 1.17062 1.14641 1.46163 1.27169 1.04461 1.37668 0.68579 1.23161 0.93496 0.88252 0.93604 1.17017 1.07046 0.85881 1.15126 1.22503 0.91468 0.92199 0.92808 1.75363 1.17256 1.08791 1.20978 1.78296 1.12238 0.97915 1.10139 1.50968 1.18789 1.13089 1.29326 0.65188 1.78738 1.16371 0.97749 1.21028 0.89484 0.84974 0.79580 0.73587 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.30 12.49 21.89 0.27 -40.03 16 2 C 0.00 0.18 5.24 85.38 0.45 0.63 16 3 Si 1.12 44.11 29.98 68.60 2.06 46.16 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.46 -26.22 8.44 23.33 0.20 -26.02 16 8 H 0.08 5.10 6.13 -2.91 -0.02 5.08 16 9 C 0.09 5.15 5.40 -20.89 -0.11 5.04 16 10 C -0.17 -8.20 8.19 22.61 0.19 -8.01 16 11 C -0.16 -6.68 11.07 66.64 0.74 -5.94 16 12 S 0.02 1.07 22.25 -56.49 -1.26 -0.19 16 13 C -0.47 -25.29 6.50 24.66 0.16 -25.13 16 14 C 0.58 31.54 7.73 86.30 0.67 32.21 16 15 O -0.55 -33.38 13.18 -4.62 -0.06 -33.44 16 16 N -0.64 -29.58 5.43 -310.98 -1.69 -31.27 16 17 C 0.33 13.34 7.81 133.71 1.04 14.39 16 18 N -0.33 -13.13 10.89 -54.06 -0.59 -13.72 16 19 N -0.45 -10.60 7.32 -57.04 -0.42 -11.02 16 20 H 0.46 6.81 8.96 -213.38 -1.91 4.89 16 21 C 0.17 3.35 11.93 83.80 1.00 4.35 16 22 C -0.23 -6.95 6.10 -20.22 -0.12 -7.07 16 23 C 0.29 8.22 8.14 137.43 1.12 9.34 16 24 N -0.35 -10.80 10.75 -52.27 -0.56 -11.36 16 25 N 0.01 0.25 13.42 37.02 0.50 0.75 16 26 N -0.27 -4.45 8.44 37.02 0.31 -4.14 16 27 H 0.49 2.81 8.96 -340.35 -3.05 -0.24 16 28 N -0.29 -6.19 12.89 -52.24 -0.67 -6.87 16 29 H 0.29 15.41 6.22 -92.71 -0.58 14.83 16 30 H 0.13 6.21 6.79 -2.91 -0.02 6.19 16 31 H 0.19 5.89 8.06 -2.91 -0.02 5.86 16 32 H 0.42 18.20 6.24 -92.71 -0.58 17.62 16 33 H 0.25 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -81.80 314.34 -0.87 -82.67 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -4.08 Total: 28.69 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.32 Total: -6.24 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -2.85 Total: -117.66 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.06 Total: -33.44 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.06 Total: 46.16 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.26 Total: -0.19 kcal Total: -81.80 -0.87 -82.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.705 kcal (2) G-P(sol) polarization free energy of solvation -81.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds